Wall clock time and date at job start Mon Mar 30 2020 00:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 C 1.53002 * 109.47209 * 119.99895 * 2 1 3 5 5 C 1.50700 * 109.46911 * 64.99681 * 4 2 1 6 6 O 1.21270 * 120.00122 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99614 * 180.02562 * 5 4 2 8 8 C 1.47015 * 125.65059 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27333 * 178.89631 * 8 7 5 10 10 C 1.55158 * 102.93925 * 337.80986 * 9 8 7 11 11 H 1.08998 * 111.00488 * 277.38897 * 10 9 8 12 12 C 1.53000 * 111.00282 * 153.57462 * 10 9 8 13 13 N 1.46500 * 109.47060 * 66.45411 * 12 10 9 14 14 C 1.46507 * 120.00146 * 89.99771 * 13 12 10 15 15 C 1.36943 * 120.00248 * 269.99824 * 13 12 10 16 16 H 1.08004 * 119.99267 * 22.73931 * 15 13 12 17 17 C 1.38807 * 120.00044 * 202.73967 * 15 13 12 18 18 N 1.31623 * 120.00210 * 13.37237 * 17 15 13 19 19 Si 1.86800 * 119.99563 * 193.36734 * 17 15 13 20 20 H 1.48498 * 109.47047 * 60.00670 * 19 17 15 21 21 H 1.48507 * 109.46812 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47237 * 300.00017 * 19 17 15 23 23 C 1.47430 * 125.64690 * 179.97438 * 7 5 4 24 24 H 1.09001 * 109.47143 * 300.00049 * 1 2 3 25 25 H 1.09002 * 109.46830 * 60.00095 * 1 2 3 26 26 H 1.08993 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47143 * 239.99951 * 2 1 3 28 28 H 1.09003 * 109.47551 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47046 * 299.99773 * 3 2 1 30 30 H 1.08996 * 109.47491 * 59.99332 * 3 2 1 31 31 H 1.09004 * 109.46906 * 305.00191 * 4 2 1 32 32 H 1.09001 * 109.47390 * 184.99986 * 4 2 1 33 33 H 1.09004 * 109.88195 * 59.47982 * 8 7 5 34 34 H 1.09000 * 110.01689 * 298.38530 * 8 7 5 35 35 H 1.09002 * 110.72293 * 219.44695 * 9 8 7 36 36 H 1.08992 * 110.71863 * 96.17042 * 9 8 7 37 37 H 1.08996 * 109.47071 * 306.45456 * 12 10 9 38 38 H 1.08998 * 109.46995 * 186.44938 * 12 10 9 39 39 H 1.09001 * 109.47093 * 95.13037 * 14 13 12 40 40 H 1.08998 * 109.46968 * 215.12712 * 14 13 12 41 41 H 1.08995 * 109.46685 * 335.13425 * 14 13 12 42 42 H 0.96997 * 120.00000 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.36648 * 85.33413 * 23 7 5 44 44 H 1.09001 * 110.36485 * 323.01437 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0116 -2.5903 0.2401 7 7 1.9844 -3.0084 2.1896 8 6 2.7427 -2.6375 3.3933 9 6 2.8713 -3.9059 4.2628 10 6 1.6928 -4.7863 3.7695 11 1 0.7604 -4.4990 4.2555 12 6 1.9879 -6.2713 3.9901 13 7 2.0424 -6.5502 5.4272 14 6 0.8252 -6.9370 6.1451 15 6 3.2310 -6.4493 6.0998 16 1 4.0258 -5.8354 5.7024 17 6 3.4143 -7.1361 7.2920 18 7 2.5676 -8.0801 7.6447 19 14 4.8629 -6.7207 8.3958 20 1 4.7766 -5.2977 8.8112 21 1 4.8339 -7.5907 9.5990 22 1 6.1301 -6.9441 7.6546 23 6 1.6606 -4.4450 2.2589 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.2085 -1.8632 3.9439 34 1 3.7329 -2.2774 3.1142 35 1 2.7554 -3.6629 5.3191 36 1 3.8250 -4.4019 4.0825 37 1 2.9456 -6.5230 3.5346 38 1 1.1997 -6.8700 3.5335 39 1 0.7672 -8.0239 6.2027 40 1 0.8495 -6.5206 7.1521 41 1 -0.0466 -6.5543 5.6145 42 1 2.6959 -8.5602 8.4776 43 1 2.4084 -5.0288 1.7221 44 1 0.6677 -4.6303 1.8492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317827812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:20 Heat of formation + Delta-G solvation = -46.569987 kcal Electronic energy + Delta-G solvation = -21103.739261 eV Core-core repulsion = 18055.423339 eV Total energy + Delta-G solvation = -3048.315922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17571 -39.11176 -37.12653 -36.35839 -33.90705 -32.22427 -30.38003 -29.28362 -27.93824 -27.88602 -26.75954 -24.12263 -23.12980 -21.37896 -21.02077 -19.89930 -18.73978 -18.08962 -17.33886 -16.81542 -16.39907 -16.10689 -15.44129 -15.11667 -14.98635 -14.79836 -14.47749 -14.43696 -14.04085 -13.69210 -13.28783 -13.12362 -13.00430 -12.98884 -12.76564 -12.71812 -12.59654 -12.33481 -12.16713 -12.03101 -11.99616 -11.74938 -11.71114 -11.57473 -11.53574 -11.36565 -10.73625 -10.55440 -9.60983 -8.71482 -7.76105 -5.24454 1.50823 1.52544 1.58649 1.65975 2.04764 2.55972 3.36736 3.44327 3.71352 3.79537 3.88795 3.97121 4.05098 4.16587 4.35761 4.38138 4.45649 4.62741 4.65050 4.70192 4.72283 4.75850 4.85969 4.86685 4.87678 4.92632 5.04717 5.06900 5.12681 5.13624 5.26381 5.32952 5.33482 5.43333 5.49053 5.51589 5.52922 5.70358 5.75825 6.38563 6.59698 7.19135 7.20937 7.92975 8.38408 9.27639 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.003738 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.229811 B = 7488.226105 C = 8019.423793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.126 4.126 5 C 0.518 3.482 6 O -0.584 6.584 7 N -0.620 5.620 8 C 0.104 3.896 9 C -0.109 4.109 10 C -0.105 4.105 11 H 0.066 0.934 12 C 0.161 3.839 13 N -0.614 5.614 14 C 0.176 3.824 15 C -0.249 4.249 16 H 0.082 0.918 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.964 3.036 20 H -0.275 1.275 21 H -0.302 1.302 22 H -0.275 1.275 23 C 0.116 3.884 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.002 0.998 40 H 0.015 0.985 41 H 0.027 0.973 42 H 0.245 0.755 43 H 0.067 0.933 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 17.868 -11.234 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 C -0.198 4.198 4 C -0.165 4.165 5 C 0.309 3.691 6 O -0.464 6.464 7 N -0.353 5.353 8 C -0.018 4.018 9 C -0.146 4.146 10 C -0.127 4.127 11 H 0.084 0.916 12 C 0.034 3.966 13 N -0.337 5.337 14 C 0.031 3.969 15 C -0.379 4.379 16 H 0.100 0.900 17 C -0.254 4.254 18 N -0.592 5.592 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.229 1.229 22 H -0.201 1.201 23 C -0.008 4.008 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.127 17.606 -11.646 21.110 hybrid contribution 0.430 -0.630 0.949 1.218 sum 0.303 16.976 -10.697 20.068 Atomic orbital electron populations 1.21923 0.95580 1.01637 1.01766 1.20866 0.96002 0.96657 0.96503 1.21808 1.01462 0.93977 1.02602 1.21819 1.04136 0.89092 1.01479 1.21114 0.78332 0.89223 0.80397 1.90637 1.42384 1.78943 1.34483 1.48753 1.55247 1.09843 1.21498 1.22223 0.96751 0.97995 0.84814 1.22477 0.98378 0.94361 0.99431 1.22831 0.98874 0.97904 0.93116 0.91554 1.20741 0.99308 0.92408 0.84110 1.44084 1.05358 1.80278 1.04011 1.20520 0.85822 0.96602 0.93954 1.19568 0.93286 1.21345 1.03693 0.90033 1.25801 1.00848 0.96926 1.01838 1.70245 1.40089 1.24950 1.23927 0.85376 0.79747 0.77434 0.78130 1.20107 1.22893 1.20105 1.22124 1.00544 0.81487 0.96618 0.92327 0.92387 0.93722 0.92332 0.91677 0.92106 0.91658 0.87235 0.86892 0.89924 0.89277 0.90775 0.91302 0.93331 0.93812 0.97989 0.96586 0.95491 0.94612 0.91497 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.93 71.98 0.64 -2.39 16 2 C -0.08 -1.45 2.57 -10.79 -0.03 -1.47 16 3 C -0.14 -1.70 9.19 71.98 0.66 -1.04 16 4 C -0.13 -2.18 4.37 29.85 0.13 -2.05 16 5 C 0.52 13.65 7.57 87.66 0.66 14.31 16 6 O -0.58 -19.83 14.22 -3.00 -0.04 -19.87 16 7 N -0.62 -16.05 3.33 -811.81 -2.70 -18.75 16 8 C 0.10 2.23 6.49 86.73 0.56 2.79 16 9 C -0.11 -3.09 5.13 31.78 0.16 -2.93 16 10 C -0.11 -3.32 3.29 -9.40 -0.03 -3.35 16 11 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 12 C 0.16 6.14 5.18 86.38 0.45 6.59 16 13 N -0.61 -29.37 2.87 -726.93 -2.09 -31.46 16 14 C 0.18 8.61 8.98 127.77 1.15 9.75 16 15 C -0.25 -12.82 8.98 84.03 0.75 -12.06 16 16 H 0.08 3.93 6.69 -2.91 -0.02 3.91 16 17 C -0.06 -3.26 5.09 84.86 0.43 -2.83 16 18 N -0.94 -55.52 10.72 21.65 0.23 -55.28 16 19 Si 0.96 43.64 29.57 68.60 2.03 45.67 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.12 3.35 6.38 86.85 0.55 3.90 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.04 1.18 5.95 -2.39 -0.01 1.16 16 27 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.06 7.39 -2.39 -0.02 2.04 16 37 H 0.05 1.86 8.00 -2.39 -0.02 1.84 16 38 H 0.04 1.61 8.07 -2.39 -0.02 1.59 16 39 H 0.00 0.10 7.34 -2.39 -0.02 0.08 16 40 H 0.02 0.82 7.33 -2.39 -0.02 0.80 16 41 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16 42 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 44 H 0.06 1.93 8.04 -2.39 -0.02 1.92 16 Total: -1.00 -65.39 344.90 4.47 -60.92 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.93 Total: 9.53 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.10 Total: 9.24 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -4.55 Total: -105.49 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.39 4.47 -60.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317827812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds