Wall clock time and date at job start Mon Mar 30 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46892 * 2 1 4 4 C 1.53000 * 109.47257 * 239.99860 * 2 1 3 5 5 N 1.46903 * 109.47075 * 119.99791 * 2 1 3 6 6 C 1.46893 * 110.99924 * 59.99897 * 5 2 1 7 7 C 1.50706 * 109.47176 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47598 * 90.00303 * 10 9 7 12 12 H 1.08005 * 119.99628 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00538 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00182 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99668 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47170 * 89.99666 * 15 13 11 17 17 H 1.48495 * 109.46883 * 209.99839 * 15 13 11 18 18 H 1.48496 * 109.47123 * 329.99923 * 15 13 11 19 19 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46986 * 90.00387 * 19 9 7 21 21 C 1.52997 * 117.49514 * 243.61460 * 20 19 9 22 22 C 1.52997 * 60.00268 * 252.51458 * 21 20 19 23 23 H 1.09003 * 109.47798 * 300.00285 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00182 * 1 2 3 25 25 H 1.09001 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47256 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47065 * 299.99881 * 3 2 1 28 28 H 1.08997 * 109.47273 * 60.00205 * 3 2 1 29 29 H 1.08995 * 109.47144 * 299.99618 * 4 2 1 30 30 H 1.08994 * 109.47051 * 59.99910 * 4 2 1 31 31 H 1.09002 * 109.46764 * 180.02562 * 4 2 1 32 32 H 1.00893 * 110.99793 * 183.95927 * 5 2 1 33 33 H 1.09001 * 109.46739 * 60.00281 * 6 5 2 34 34 H 1.09000 * 109.47767 * 300.00540 * 6 5 2 35 35 H 1.09008 * 109.47096 * 209.99661 * 10 9 7 36 36 H 1.09003 * 109.47776 * 329.99537 * 10 9 7 37 37 H 0.97002 * 119.99991 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.46971 * 209.99938 * 19 9 7 39 39 H 1.08993 * 109.47768 * 330.00002 * 19 9 7 40 40 H 1.09000 * 115.55217 * 29.32861 * 20 19 9 41 41 H 1.09003 * 117.50408 * 0.02562 * 21 20 19 42 42 H 1.09009 * 117.49806 * 145.01909 * 21 20 19 43 43 H 1.09001 * 117.49351 * 252.51715 * 22 21 20 44 44 H 1.08988 * 117.50123 * 107.49613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5486 -2.0834 1.2335 7 6 2.0702 -2.7603 2.4748 8 8 2.7655 -2.1443 3.2546 9 7 1.7641 -4.0500 2.7184 10 6 2.2707 -4.7077 3.9254 11 6 1.2841 -4.5237 5.0496 12 1 0.3711 -3.9717 4.8818 13 6 1.5469 -5.0601 6.2922 14 7 0.6861 -4.8992 7.2733 15 14 3.1263 -6.0143 6.5826 16 1 4.1914 -5.0830 7.0338 17 1 2.8966 -7.0462 7.6254 18 1 3.5466 -6.6720 5.3193 19 6 0.9247 -4.7941 1.7761 20 6 1.8107 -5.4690 0.7270 21 6 1.6465 -5.0246 -0.7277 22 6 1.1294 -6.3942 -0.2833 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7216 -1.2489 32 1 3.0261 -0.6500 1.2559 33 1 1.9121 -2.6117 0.3521 34 1 0.4587 -2.0980 1.2419 35 1 2.4049 -5.7717 3.7303 36 1 3.2272 -4.2663 4.2056 37 1 0.8711 -5.2762 8.1477 38 1 0.3578 -5.5530 2.3155 39 1 0.2359 -4.1082 1.2830 40 1 2.8124 -5.7392 1.0611 41 1 0.9077 -4.2511 -0.9375 42 1 2.5405 -5.0021 -1.3511 43 1 1.6832 -7.2728 -0.6142 44 1 0.0502 -6.5221 -0.2007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318503295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:57 Heat of formation + Delta-G solvation = -10.526149 kcal Electronic energy + Delta-G solvation = -21604.379664 eV Core-core repulsion = 18557.626720 eV Total energy + Delta-G solvation = -3046.752944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52880 -37.92634 -37.14107 -34.46873 -32.50224 -31.73512 -28.69040 -27.57315 -27.40001 -26.58071 -25.23543 -22.38894 -22.03619 -20.76465 -19.23352 -18.45823 -16.91725 -16.85859 -15.80747 -15.51427 -15.04989 -14.75022 -14.56550 -14.17974 -13.94092 -13.84904 -13.36370 -12.78165 -12.65710 -12.47609 -12.19102 -12.14798 -11.92174 -11.71684 -11.63852 -11.54133 -11.47710 -11.38238 -11.07615 -10.87099 -10.74120 -10.53693 -10.33782 -10.10498 -9.91529 -9.49212 -8.93029 -8.55346 -8.23387 -7.68774 -6.04975 -4.03276 3.31283 3.37064 3.39089 3.40464 3.63424 3.85523 4.32372 4.42709 4.73602 4.79994 4.84500 4.94033 4.98086 5.09178 5.25012 5.30372 5.37471 5.43598 5.44858 5.57289 5.58310 5.59723 5.68827 5.78456 5.80262 5.81455 5.84159 5.89759 5.98386 6.02480 6.09338 6.20311 6.27638 6.35638 6.71320 6.95657 7.12035 7.39973 7.51726 7.65228 8.30353 8.51252 8.98044 9.06334 9.55552 11.08564 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.005713 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.733982 B = 4899.702153 C = 5918.233014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 C -0.138 4.138 4 C -0.183 4.183 5 N -0.661 5.661 6 C 0.037 3.963 7 C 0.508 3.492 8 O -0.527 6.527 9 N -0.592 5.592 10 C 0.217 3.783 11 C -0.526 4.526 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.876 3.124 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.143 3.857 20 C -0.167 4.167 21 C -0.185 4.185 22 C -0.175 4.175 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.348 0.652 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 3.544 -20.205 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.013 3.987 3 C -0.195 4.195 4 C -0.242 4.242 5 N -0.294 5.294 6 C -0.095 4.095 7 C 0.295 3.705 8 O -0.403 6.403 9 N -0.324 5.324 10 C 0.097 3.903 11 C -0.565 4.565 12 H 0.092 0.908 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.191 1.191 19 C 0.018 3.982 20 C -0.186 4.186 21 C -0.222 4.222 22 C -0.212 4.212 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.581 4.068 -19.148 19.584 hybrid contribution 1.254 -1.087 -0.438 1.717 sum 1.835 2.981 -19.586 19.896 Atomic orbital electron populations 1.21899 0.93934 1.01988 1.02050 1.20972 0.95617 0.94286 0.87818 1.21801 1.00896 0.94734 1.02094 1.22598 1.01260 1.01290 0.99085 1.60297 1.17236 1.13392 1.38427 1.21982 1.01716 0.89568 0.96279 1.20282 0.81291 0.81838 0.87116 1.90667 1.38234 1.63303 1.48109 1.47844 1.50613 1.10657 1.23308 1.19635 0.96027 0.92108 0.82567 1.21337 1.06247 1.35082 0.93835 0.90753 1.24849 0.96476 0.95896 0.95766 1.69898 1.35818 1.45621 1.02325 0.86859 0.84363 0.80149 0.78352 1.19947 1.21122 1.19123 1.21020 0.91566 0.95981 0.89603 1.22957 1.01729 1.03220 0.90710 1.23041 1.03047 0.98293 0.97861 1.22902 1.00852 0.93714 1.03764 0.91554 0.92496 0.92662 0.92777 0.92344 0.91562 0.92263 0.92191 0.92704 0.83189 0.92282 0.88618 0.95308 0.94684 0.92615 0.89230 0.91311 0.87534 0.88962 0.89257 0.88975 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.24 37.16 0.31 -1.18 16 2 C 0.10 1.15 0.97 -131.60 -0.13 1.02 16 3 C -0.14 -1.37 8.73 37.16 0.32 -1.05 16 4 C -0.18 -1.73 8.23 37.16 0.31 -1.42 16 5 N -0.66 -9.65 5.71 -101.22 -0.58 -10.23 16 6 C 0.04 0.55 3.93 -4.98 -0.02 0.53 16 7 C 0.51 10.47 7.71 -10.98 -0.08 10.38 16 8 O -0.53 -13.21 15.78 5.56 0.09 -13.12 16 9 N -0.59 -12.14 2.46 -175.06 -0.43 -12.57 16 10 C 0.22 5.34 4.23 -5.20 -0.02 5.32 16 11 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 12 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 15 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 16 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.87 16 19 C 0.14 2.24 5.49 -4.04 -0.02 2.22 16 20 C -0.17 -2.17 5.95 -90.62 -0.54 -2.71 16 21 C -0.19 -1.91 9.18 -26.73 -0.25 -2.15 16 22 C -0.17 -1.83 10.25 -26.73 -0.27 -2.10 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.56 6.40 -51.93 -0.33 0.23 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.35 5.24 8.42 -39.30 -0.33 4.91 16 33 H 0.06 0.76 5.00 -51.93 -0.26 0.50 16 34 H 0.10 1.38 5.57 -51.93 -0.29 1.09 16 35 H 0.03 0.68 7.13 -51.92 -0.37 0.31 16 36 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 39 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 40 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 42 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 0.93 8.14 -51.94 -0.42 0.51 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -33.50 348.27 -8.06 -41.56 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.66 Total: 3.93 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.84 Total: -4.73 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.23 Total: -50.04 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.50 -8.06 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318503295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.034 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds