Wall clock time and date at job start Mon Mar 30 2020 01:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46892 * 2 1 4 4 C 1.53000 * 109.47257 * 239.99860 * 2 1 3 5 5 N 1.46903 * 109.47075 * 119.99791 * 2 1 3 6 6 C 1.46893 * 110.99924 * 59.99897 * 5 2 1 7 7 C 1.50706 * 109.47176 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47598 * 90.00303 * 10 9 7 12 12 H 1.08005 * 119.99628 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00538 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00182 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99668 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47170 * 89.99666 * 15 13 11 17 17 H 1.48495 * 109.46883 * 209.99839 * 15 13 11 18 18 H 1.48496 * 109.47123 * 329.99923 * 15 13 11 19 19 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46986 * 90.00387 * 19 9 7 21 21 C 1.52997 * 117.49514 * 243.61460 * 20 19 9 22 22 C 1.52997 * 60.00268 * 252.51458 * 21 20 19 23 23 H 1.09003 * 109.47798 * 300.00285 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00182 * 1 2 3 25 25 H 1.09001 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47256 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47065 * 299.99881 * 3 2 1 28 28 H 1.08997 * 109.47273 * 60.00205 * 3 2 1 29 29 H 1.08995 * 109.47144 * 299.99618 * 4 2 1 30 30 H 1.08994 * 109.47051 * 59.99910 * 4 2 1 31 31 H 1.09002 * 109.46764 * 180.02562 * 4 2 1 32 32 H 1.00893 * 110.99793 * 183.95927 * 5 2 1 33 33 H 1.09001 * 109.46739 * 60.00281 * 6 5 2 34 34 H 1.09000 * 109.47767 * 300.00540 * 6 5 2 35 35 H 1.09008 * 109.47096 * 209.99661 * 10 9 7 36 36 H 1.09003 * 109.47776 * 329.99537 * 10 9 7 37 37 H 0.97002 * 119.99991 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.46971 * 209.99938 * 19 9 7 39 39 H 1.08993 * 109.47768 * 330.00002 * 19 9 7 40 40 H 1.09000 * 115.55217 * 29.32861 * 20 19 9 41 41 H 1.09003 * 117.50408 * 0.02562 * 21 20 19 42 42 H 1.09009 * 117.49806 * 145.01909 * 21 20 19 43 43 H 1.09001 * 117.49351 * 252.51715 * 22 21 20 44 44 H 1.08988 * 117.50123 * 107.49613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 1.5486 -2.0834 1.2335 7 6 2.0702 -2.7603 2.4748 8 8 2.7655 -2.1443 3.2546 9 7 1.7641 -4.0500 2.7184 10 6 2.2707 -4.7077 3.9254 11 6 1.2841 -4.5237 5.0496 12 1 0.3711 -3.9717 4.8818 13 6 1.5469 -5.0601 6.2922 14 7 0.6861 -4.8992 7.2733 15 14 3.1263 -6.0143 6.5826 16 1 4.1914 -5.0830 7.0338 17 1 2.8966 -7.0462 7.6254 18 1 3.5466 -6.6720 5.3193 19 6 0.9247 -4.7941 1.7761 20 6 1.8107 -5.4690 0.7270 21 6 1.6465 -5.0246 -0.7277 22 6 1.1294 -6.3942 -0.2833 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7216 -1.2489 32 1 3.0261 -0.6500 1.2559 33 1 1.9121 -2.6117 0.3521 34 1 0.4587 -2.0980 1.2419 35 1 2.4049 -5.7717 3.7303 36 1 3.2272 -4.2663 4.2056 37 1 0.8711 -5.2762 8.1477 38 1 0.3578 -5.5530 2.3155 39 1 0.2359 -4.1082 1.2830 40 1 2.8124 -5.7392 1.0611 41 1 0.9077 -4.2511 -0.9375 42 1 2.5405 -5.0021 -1.3511 43 1 1.6832 -7.2728 -0.6142 44 1 0.0502 -6.5221 -0.2007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318503295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:56 Heat of formation + Delta-G solvation = -33.464626 kcal Electronic energy + Delta-G solvation = -21605.374351 eV Core-core repulsion = 18557.626720 eV Total energy + Delta-G solvation = -3047.747631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98801 -38.94724 -38.30864 -36.13024 -34.59898 -32.94268 -30.55040 -28.46666 -28.14147 -27.85127 -26.74230 -23.94537 -23.18017 -21.86310 -20.17517 -19.95956 -19.09043 -18.21379 -17.35751 -16.84006 -16.20514 -16.03448 -15.77302 -15.74089 -15.02414 -14.89948 -14.58184 -14.40522 -14.04029 -13.88205 -13.78674 -13.38879 -12.99454 -12.91210 -12.72688 -12.60266 -12.57428 -12.44666 -12.33298 -12.27799 -12.04373 -11.92225 -11.76652 -11.57585 -11.25453 -10.93423 -10.83360 -10.53389 -9.45422 -9.26241 -8.34206 -6.39021 1.31057 1.35559 1.43778 1.80970 2.19992 2.30358 2.93550 3.00079 3.23476 3.66477 3.89483 3.93301 4.02575 4.07067 4.15298 4.25162 4.28863 4.38483 4.43707 4.71088 4.73897 4.74297 4.77510 4.83133 4.84381 4.91427 4.93632 4.96969 5.02918 5.04877 5.07617 5.22937 5.30912 5.33597 5.38216 5.45819 5.47656 5.62608 6.08273 6.25101 6.41978 6.62127 6.73098 7.21755 7.45311 8.82991 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.005713 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.733982 B = 4899.702153 C = 5918.233014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.101 3.899 3 C -0.136 4.136 4 C -0.178 4.178 5 N -0.684 5.684 6 C 0.057 3.943 7 C 0.497 3.503 8 O -0.583 6.583 9 N -0.598 5.598 10 C 0.228 3.772 11 C -0.535 4.535 12 H 0.027 0.973 13 C 0.011 3.989 14 N -0.945 5.945 15 Si 0.948 3.052 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.239 1.239 19 C 0.141 3.859 20 C -0.190 4.190 21 C -0.167 4.167 22 C -0.161 4.161 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.343 0.657 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.268 0.732 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 2.696 -23.516 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 C -0.194 4.194 4 C -0.237 4.237 5 N -0.317 5.317 6 C -0.075 4.075 7 C 0.285 3.715 8 O -0.463 6.463 9 N -0.328 5.328 10 C 0.105 3.895 11 C -0.573 4.573 12 H 0.046 0.954 13 C -0.186 4.186 14 N -0.586 5.586 15 Si 0.771 3.229 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.162 1.162 19 C 0.018 3.982 20 C -0.210 4.210 21 C -0.203 4.203 22 C -0.199 4.199 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.089 3.203 -22.524 22.777 hybrid contribution 0.979 -0.745 0.586 1.363 sum 2.068 2.458 -21.938 22.172 Atomic orbital electron populations 1.21925 0.93510 1.02166 1.02325 1.21124 0.95912 0.94563 0.87301 1.21803 1.00949 0.94204 1.02406 1.22527 1.01216 1.01338 0.98592 1.60307 1.17017 1.13184 1.41157 1.21840 1.01782 0.89883 0.94005 1.21342 0.80311 0.81524 0.88282 1.90627 1.40799 1.64503 1.50383 1.47925 1.50872 1.11244 1.22803 1.19263 0.93942 0.93168 0.83112 1.21557 1.05570 1.34353 0.95861 0.95448 1.25841 1.00451 0.97069 0.95281 1.70050 1.38288 1.47160 1.03061 0.85716 0.78953 0.78701 0.79580 1.20247 1.19839 1.16247 1.21231 0.91777 0.95832 0.89346 1.22661 1.00748 1.06091 0.91489 1.23166 1.03730 0.98497 0.94953 1.23016 1.01373 0.94247 1.01250 0.93502 0.90047 0.92511 0.92747 0.90023 0.93228 0.91939 0.90239 0.92794 0.83787 0.89343 0.87703 0.93536 0.96567 0.92270 0.90815 0.88965 0.89168 0.87453 0.88017 0.87865 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.24 71.98 0.59 -2.08 16 2 C 0.10 2.03 0.97 3.53 0.00 2.03 16 3 C -0.14 -2.50 8.73 71.98 0.63 -1.87 16 4 C -0.18 -2.73 8.23 71.98 0.59 -2.14 16 5 N -0.68 -19.56 5.71 -474.15 -2.71 -22.27 16 6 C 0.06 1.64 3.93 85.56 0.34 1.98 16 7 C 0.50 20.78 7.71 87.66 0.68 21.46 16 8 O -0.58 -30.40 15.78 -3.02 -0.05 -30.45 16 9 N -0.60 -24.81 2.46 -826.16 -2.03 -26.84 16 10 C 0.23 11.41 4.23 85.63 0.36 11.77 16 11 C -0.53 -32.33 9.94 25.60 0.25 -32.07 16 12 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 13 C 0.01 0.69 5.47 84.66 0.46 1.16 16 14 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 15 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 19 C 0.14 4.30 5.49 86.38 0.47 4.77 16 20 C -0.19 -4.56 5.95 -10.79 -0.06 -4.62 16 21 C -0.17 -2.76 9.18 30.59 0.28 -2.48 16 22 C -0.16 -2.82 10.25 30.59 0.31 -2.51 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.04 6.41 -2.39 -0.02 1.02 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 0.92 6.40 -2.39 -0.02 0.90 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.34 10.31 8.42 -89.70 -0.76 9.56 16 33 H 0.09 2.03 5.00 -2.39 -0.01 2.02 16 34 H 0.11 2.86 5.57 -2.39 -0.01 2.85 16 35 H 0.05 2.16 7.13 -2.38 -0.02 2.14 16 36 H 0.02 0.88 6.85 -2.39 -0.02 0.86 16 37 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 38 H 0.07 2.45 8.07 -2.38 -0.02 2.43 16 39 H 0.09 2.32 6.17 -2.39 -0.01 2.31 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.11 1.48 7.87 -2.39 -0.02 1.46 16 42 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -77.25 348.27 2.47 -74.77 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.16 Total: 22.68 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 4.91 Total: -4.61 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.44 Total: -109.77 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -77.25 2.47 -74.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318503295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.309 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds