Wall clock time and date at job start Mon Mar 30 2020 00:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47384 * 2 1 4 4 C 1.52993 * 109.47161 * 120.00422 * 2 1 3 5 5 C 1.50703 * 109.47167 * 64.99564 * 4 2 1 6 6 O 1.21282 * 120.00119 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00034 * 180.27721 * 5 4 2 8 8 C 1.46500 * 120.00114 * 179.73052 * 7 5 4 9 9 C 1.52998 * 109.47233 * 175.12819 * 8 7 5 10 10 N 1.46504 * 110.01384 * 303.89845 * 9 8 7 11 11 C 1.36935 * 120.00238 * 301.46100 * 10 9 8 12 12 H 1.08004 * 119.99665 * 354.60705 * 11 10 9 13 13 C 1.38803 * 120.00122 * 174.60616 * 11 10 9 14 14 N 1.31615 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00108 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46871 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47367 * 120.00179 * 15 13 11 18 18 H 1.48504 * 109.47436 * 240.00395 * 15 13 11 19 19 C 1.54268 * 110.03472 * 182.45664 * 9 8 7 20 20 C 1.54883 * 104.19573 * 217.10494 * 19 9 8 21 21 C 1.54893 * 102.75251 * 37.94262 * 20 19 9 22 22 C 1.53881 * 110.03276 * 65.28891 * 9 8 7 23 23 H 1.09011 * 109.47004 * 59.99753 * 1 2 3 24 24 H 1.08998 * 109.47577 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47346 * 299.99854 * 1 2 3 26 26 H 1.09002 * 109.46911 * 239.99834 * 2 1 3 27 27 H 1.09002 * 109.47515 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47428 * 300.00435 * 3 2 1 29 29 H 1.09002 * 109.47232 * 60.00031 * 3 2 1 30 30 H 1.09002 * 109.47291 * 305.00007 * 4 2 1 31 31 H 1.08997 * 109.47409 * 184.99949 * 4 2 1 32 32 H 0.97006 * 119.99722 * 359.72424 * 7 5 4 33 33 H 1.09006 * 109.46355 * 295.12188 * 8 7 5 34 34 H 1.08991 * 109.47267 * 55.12455 * 8 7 5 35 35 H 0.97002 * 119.99847 * 121.46211 * 10 9 8 36 36 H 0.97010 * 120.00288 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.48206 * 335.78366 * 19 9 8 38 38 H 1.09003 * 110.48427 * 98.42263 * 19 9 8 39 39 H 1.08999 * 110.75451 * 279.62307 * 20 19 9 40 40 H 1.08998 * 110.75356 * 156.25739 * 20 19 9 41 41 H 1.08993 * 110.48645 * 203.37957 * 21 20 19 42 42 H 1.08995 * 110.48639 * 80.73189 * 21 20 19 43 43 H 1.08999 * 110.03041 * 238.56963 * 22 9 8 44 44 H 1.08998 * 110.03252 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6412 -2.1734 1.1887 6 8 1.0115 -2.5904 0.2397 7 7 1.9799 -3.0075 2.1917 8 6 1.5872 -4.4178 2.1358 9 6 2.1947 -5.1639 3.3254 10 7 3.6495 -4.9912 3.3357 11 6 4.3941 -5.3908 2.2582 12 1 3.9215 -5.9118 1.4386 13 6 5.7562 -5.1263 2.2193 14 7 6.3321 -4.4919 3.2183 15 14 6.7718 -5.6708 0.7491 16 1 5.8938 -6.3582 -0.2317 17 1 7.3930 -4.4833 0.1095 18 1 7.8358 -6.6033 1.2004 19 6 1.8401 -6.6632 3.2458 20 6 1.6065 -7.0770 4.7200 21 6 0.8925 -5.8374 5.3140 22 6 1.5922 -4.6389 4.6404 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2619 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 2.4839 -2.6741 2.9506 33 1 0.5005 -4.4941 2.1757 34 1 1.9487 -4.8591 1.2071 35 1 4.0853 -4.5938 4.1058 36 1 7.2841 -4.3073 3.1913 37 1 0.9327 -6.8099 2.6600 38 1 2.6676 -7.2287 2.8173 39 1 2.5552 -7.2557 5.2260 40 1 0.9652 -7.9565 4.7773 41 1 1.0285 -5.8004 6.3948 42 1 -0.1679 -5.8509 5.0622 43 1 2.3823 -4.2564 5.2866 44 1 0.8674 -3.8522 4.4311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319330476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:34 Heat of formation + Delta-G solvation = -56.608964 kcal Electronic energy + Delta-G solvation = -21658.671803 eV Core-core repulsion = 18609.920558 eV Total energy + Delta-G solvation = -3048.751245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.52419 -38.24910 -35.42820 -33.96988 -33.26899 -30.69819 -28.74112 -28.24428 -27.11281 -26.95677 -24.28399 -23.13149 -20.78470 -20.09340 -19.42531 -18.52766 -17.00742 -16.67745 -15.68609 -15.49750 -14.90247 -14.70490 -14.33211 -13.96123 -13.64833 -13.50347 -13.33107 -12.78879 -12.63054 -12.25764 -12.17416 -11.88088 -11.58628 -11.44895 -11.11100 -10.95798 -10.80941 -10.73191 -10.67886 -10.63425 -10.54241 -10.50067 -10.22243 -10.14114 -9.83821 -9.65085 -9.22213 -8.90447 -8.32663 -7.01163 -5.81484 -3.10098 3.20121 3.40837 3.48709 3.49656 3.83129 4.56455 4.92871 5.03956 5.06746 5.11794 5.18263 5.24106 5.52795 5.57356 5.62785 5.69680 5.72651 5.78279 5.78981 5.82643 5.94222 5.95214 5.96906 6.08794 6.10577 6.18751 6.22514 6.27582 6.31238 6.45264 6.49015 6.55268 6.58433 6.64511 6.77422 6.83481 7.02411 7.17971 7.71070 8.17038 8.37337 8.83271 9.49286 10.03332 10.38674 11.40695 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.006904 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.542069 B = 4054.636555 C = 5612.484917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.138 4.138 5 C 0.509 3.491 6 O -0.556 6.556 7 N -0.702 5.702 8 C 0.121 3.879 9 C 0.188 3.812 10 N -0.711 5.711 11 C -0.230 4.230 12 H 0.070 0.930 13 C -0.010 4.010 14 N -0.932 5.932 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.292 1.292 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.125 4.125 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.401 0.599 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 5.845 1.628 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.178 4.178 5 C 0.296 3.704 6 O -0.436 6.436 7 N -0.351 5.351 8 C -0.006 4.006 9 C 0.096 3.904 10 N -0.352 5.352 11 C -0.361 4.361 12 H 0.088 0.912 13 C -0.206 4.206 14 N -0.580 5.580 15 Si 0.732 3.268 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.220 1.220 19 C -0.172 4.172 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.163 4.163 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.236 0.764 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.218 0.782 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.120 5.489 0.803 12.427 hybrid contribution 1.224 -0.015 -0.202 1.240 sum -9.896 5.474 0.601 11.325 Atomic orbital electron populations 1.21945 0.95038 1.03368 1.00447 1.20829 0.96358 0.95044 0.97664 1.21863 1.01008 0.96056 1.01526 1.21744 1.03077 0.92816 1.00145 1.20555 0.79364 0.88239 0.82280 1.90603 1.41266 1.78304 1.33440 1.45776 1.56254 1.09878 1.23190 1.21833 0.96851 0.80912 1.00974 1.20469 0.86021 0.92612 0.91278 1.42551 0.98965 1.73822 1.19869 1.19132 0.90050 1.29402 0.97489 0.91247 1.24672 0.96922 1.01103 0.97856 1.69657 1.10507 1.46446 1.31434 0.86218 0.80426 0.77777 0.82421 1.20582 1.21974 1.21962 1.22824 1.00695 0.97894 0.95790 1.22385 0.99880 0.96471 0.96729 1.22300 0.98891 0.95505 0.99129 1.22427 0.99535 0.97579 0.96803 0.93388 0.90568 0.93668 0.90518 0.92651 0.92728 0.92836 0.89531 0.88918 0.76431 0.93375 0.91649 0.78155 0.93660 0.92956 0.90334 0.91414 0.92751 0.92384 0.92315 0.91334 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.93 37.16 0.33 -1.61 16 2 C -0.08 -1.05 2.57 -90.63 -0.23 -1.29 16 3 C -0.15 -1.56 9.19 37.15 0.34 -1.22 16 4 C -0.14 -1.91 5.17 -27.89 -0.14 -2.05 16 5 C 0.51 8.98 7.55 -10.98 -0.08 8.90 16 6 O -0.56 -11.42 13.96 5.56 0.08 -11.34 16 7 N -0.70 -12.35 5.10 -60.29 -0.31 -12.66 16 8 C 0.12 2.23 3.99 -4.04 -0.02 2.22 16 9 C 0.19 3.40 0.68 -130.70 -0.09 3.32 16 10 N -0.71 -15.90 4.76 -46.19 -0.22 -16.12 16 11 C -0.23 -5.93 8.39 -15.06 -0.13 -6.06 16 12 H 0.07 1.83 7.23 -52.48 -0.38 1.45 16 13 C -0.01 -0.27 5.50 -17.44 -0.10 -0.36 16 14 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 15 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 C -0.13 -2.27 5.94 -25.07 -0.15 -2.42 16 20 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 21 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 22 C -0.13 -1.90 5.80 -25.61 -0.15 -2.05 16 23 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 24 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.15 7.95 -51.93 -0.41 0.74 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.40 6.77 7.99 -40.82 -0.33 6.45 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 35 H 0.38 9.20 7.28 -40.82 -0.30 8.91 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 38 H 0.08 1.55 7.12 -51.93 -0.37 1.18 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 44 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -29.12 345.08 -8.18 -37.30 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -7.88 Total: 12.74 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -0.75 Total: -6.34 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.20 Total: -54.74 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.12 -8.18 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319330476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.311 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds