Wall clock time and date at job start Mon Mar 30 2020 00:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47384 * 2 1 4 4 C 1.52993 * 109.47161 * 120.00422 * 2 1 3 5 5 C 1.50703 * 109.47167 * 64.99564 * 4 2 1 6 6 O 1.21282 * 120.00119 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00034 * 180.27721 * 5 4 2 8 8 C 1.46500 * 120.00114 * 179.73052 * 7 5 4 9 9 C 1.52998 * 109.47233 * 175.12819 * 8 7 5 10 10 N 1.46504 * 110.01384 * 303.89845 * 9 8 7 11 11 C 1.36935 * 120.00238 * 301.46100 * 10 9 8 12 12 H 1.08004 * 119.99665 * 354.60705 * 11 10 9 13 13 C 1.38803 * 120.00122 * 174.60616 * 11 10 9 14 14 N 1.31615 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00108 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46871 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47367 * 120.00179 * 15 13 11 18 18 H 1.48504 * 109.47436 * 240.00395 * 15 13 11 19 19 C 1.54268 * 110.03472 * 182.45664 * 9 8 7 20 20 C 1.54883 * 104.19573 * 217.10494 * 19 9 8 21 21 C 1.54893 * 102.75251 * 37.94262 * 20 19 9 22 22 C 1.53881 * 110.03276 * 65.28891 * 9 8 7 23 23 H 1.09011 * 109.47004 * 59.99753 * 1 2 3 24 24 H 1.08998 * 109.47577 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47346 * 299.99854 * 1 2 3 26 26 H 1.09002 * 109.46911 * 239.99834 * 2 1 3 27 27 H 1.09002 * 109.47515 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47428 * 300.00435 * 3 2 1 29 29 H 1.09002 * 109.47232 * 60.00031 * 3 2 1 30 30 H 1.09002 * 109.47291 * 305.00007 * 4 2 1 31 31 H 1.08997 * 109.47409 * 184.99949 * 4 2 1 32 32 H 0.97006 * 119.99722 * 359.72424 * 7 5 4 33 33 H 1.09006 * 109.46355 * 295.12188 * 8 7 5 34 34 H 1.08991 * 109.47267 * 55.12455 * 8 7 5 35 35 H 0.97002 * 119.99847 * 121.46211 * 10 9 8 36 36 H 0.97010 * 120.00288 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.48206 * 335.78366 * 19 9 8 38 38 H 1.09003 * 110.48427 * 98.42263 * 19 9 8 39 39 H 1.08999 * 110.75451 * 279.62307 * 20 19 9 40 40 H 1.08998 * 110.75356 * 156.25739 * 20 19 9 41 41 H 1.08993 * 110.48645 * 203.37957 * 21 20 19 42 42 H 1.08995 * 110.48639 * 80.73189 * 21 20 19 43 43 H 1.08999 * 110.03041 * 238.56963 * 22 9 8 44 44 H 1.08998 * 110.03252 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6412 -2.1734 1.1887 6 8 1.0115 -2.5904 0.2397 7 7 1.9799 -3.0075 2.1917 8 6 1.5872 -4.4178 2.1358 9 6 2.1947 -5.1639 3.3254 10 7 3.6495 -4.9912 3.3357 11 6 4.3941 -5.3908 2.2582 12 1 3.9215 -5.9118 1.4386 13 6 5.7562 -5.1263 2.2193 14 7 6.3321 -4.4919 3.2183 15 14 6.7718 -5.6708 0.7491 16 1 5.8938 -6.3582 -0.2317 17 1 7.3930 -4.4833 0.1095 18 1 7.8358 -6.6033 1.2004 19 6 1.8401 -6.6632 3.2458 20 6 1.6065 -7.0770 4.7200 21 6 0.8925 -5.8374 5.3140 22 6 1.5922 -4.6389 4.6404 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2619 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 2.4839 -2.6741 2.9506 33 1 0.5005 -4.4941 2.1757 34 1 1.9487 -4.8591 1.2071 35 1 4.0853 -4.5938 4.1058 36 1 7.2841 -4.3073 3.1913 37 1 0.9327 -6.8099 2.6600 38 1 2.6676 -7.2287 2.8173 39 1 2.5552 -7.2557 5.2260 40 1 0.9652 -7.9565 4.7773 41 1 1.0285 -5.8004 6.3948 42 1 -0.1679 -5.8509 5.0622 43 1 2.3823 -4.2564 5.2866 44 1 0.8674 -3.8522 4.4311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319330476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:33 Heat of formation + Delta-G solvation = -74.429119 kcal Electronic energy + Delta-G solvation = -21659.444543 eV Core-core repulsion = 18609.920558 eV Total energy + Delta-G solvation = -3049.523985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94545 -39.65314 -36.53308 -35.49991 -35.04455 -32.44738 -30.17851 -29.54421 -28.44544 -27.91984 -26.01469 -24.72108 -22.05872 -21.28574 -20.71572 -20.00956 -18.93305 -18.06813 -17.21059 -16.79968 -16.33966 -16.07476 -15.87652 -15.40398 -15.19651 -14.81727 -14.66677 -14.13878 -14.05364 -13.62348 -13.24768 -13.17853 -13.00265 -12.92503 -12.69268 -12.46793 -12.32195 -12.17451 -12.02634 -11.87756 -11.73373 -11.70878 -11.58801 -11.56210 -11.36599 -11.31842 -10.93750 -10.58712 -9.83002 -8.94696 -7.92164 -5.17011 1.41160 1.44763 1.51174 1.79756 2.45786 2.56622 3.39397 3.77557 3.83166 3.86247 3.92645 4.01888 4.06951 4.16461 4.41385 4.48241 4.59670 4.66708 4.68069 4.73449 4.77999 4.79176 4.87276 4.87785 4.98228 5.05497 5.06055 5.13578 5.15823 5.19511 5.27665 5.30107 5.40812 5.45962 5.50948 5.55090 5.60364 5.62636 5.74577 6.32293 6.75483 7.39465 7.42612 8.13512 8.38049 9.30432 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.006904 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.542069 B = 4054.636555 C = 5612.484917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.131 4.131 5 C 0.501 3.499 6 O -0.589 6.589 7 N -0.701 5.701 8 C 0.128 3.872 9 C 0.183 3.817 10 N -0.713 5.713 11 C -0.211 4.211 12 H 0.060 0.940 13 C -0.064 4.064 14 N -0.960 5.960 15 Si 0.947 3.053 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.294 1.294 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.119 4.119 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.406 0.594 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.376 0.624 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 6.816 2.634 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.198 4.198 4 C -0.171 4.171 5 C 0.289 3.711 6 O -0.471 6.471 7 N -0.350 5.350 8 C 0.001 3.999 9 C 0.093 3.907 10 N -0.353 5.353 11 C -0.343 4.343 12 H 0.078 0.922 13 C -0.257 4.257 14 N -0.611 5.611 15 Si 0.779 3.221 16 H -0.204 1.204 17 H -0.225 1.225 18 H -0.221 1.221 19 C -0.173 4.173 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.157 4.157 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.210 0.790 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.760 6.450 1.811 14.411 hybrid contribution 1.623 -0.364 -0.550 1.752 sum -11.137 6.086 1.260 12.754 Atomic orbital electron populations 1.21877 0.94704 1.01819 1.01922 1.20841 0.96658 0.96431 0.96110 1.21807 1.01021 0.94123 1.02844 1.21794 1.03277 0.90164 1.01864 1.21296 0.78545 0.89734 0.81480 1.90592 1.42739 1.79201 1.34583 1.45816 1.56222 1.09492 1.23517 1.21691 0.97546 0.81433 0.99183 1.20736 0.83634 0.93386 0.92971 1.42612 1.00758 1.73406 1.18550 1.19235 0.90180 1.27295 0.97605 0.92214 1.25187 0.98034 1.02625 0.99838 1.69754 1.10204 1.48397 1.32753 0.85453 0.79189 0.77050 0.80403 1.20408 1.22542 1.22148 1.22784 1.00112 0.96575 0.97815 1.22354 0.99803 0.98336 0.94560 1.22293 0.99533 0.93231 0.99887 1.22371 0.99696 0.98819 0.94805 0.92336 0.93522 0.91783 0.93239 0.92612 0.91789 0.91156 0.86549 0.88771 0.75883 0.91856 0.95444 0.79038 0.94294 0.91387 0.93601 0.93228 0.90424 0.90656 0.90223 0.91883 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.93 71.98 0.64 -2.90 16 2 C -0.08 -2.04 2.57 -10.80 -0.03 -2.07 16 3 C -0.14 -2.64 9.19 71.98 0.66 -1.98 16 4 C -0.13 -3.44 5.17 29.85 0.15 -3.29 16 5 C 0.50 17.52 7.55 87.66 0.66 18.18 16 6 O -0.59 -24.53 13.96 -3.04 -0.04 -24.58 16 7 N -0.70 -24.32 5.10 -463.06 -2.36 -26.69 16 8 C 0.13 4.71 3.99 86.38 0.34 5.06 16 9 C 0.18 6.50 0.68 4.33 0.00 6.50 16 10 N -0.71 -32.10 4.76 -300.06 -1.43 -33.53 16 11 C -0.21 -11.07 8.39 84.03 0.70 -10.37 16 12 H 0.06 3.23 7.23 -2.91 -0.02 3.21 16 13 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 14 N -0.96 -55.76 13.06 21.65 0.28 -55.48 16 15 Si 0.95 46.49 29.55 68.60 2.03 48.52 16 16 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 17 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 18 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 19 C -0.13 -4.48 5.94 31.67 0.19 -4.29 16 20 C -0.11 -3.14 6.91 31.88 0.22 -2.92 16 21 C -0.11 -2.64 6.83 31.67 0.22 -2.42 16 22 C -0.12 -3.33 5.80 31.32 0.18 -3.15 16 23 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.05 1.42 5.95 -2.39 -0.01 1.40 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.50 7.95 -2.39 -0.02 1.48 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.41 13.33 7.99 -92.70 -0.74 12.59 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.03 1.21 7.49 -2.39 -0.02 1.19 16 35 H 0.38 18.14 7.28 -92.71 -0.67 17.47 16 36 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 37 H 0.07 2.06 7.85 -2.39 -0.02 2.04 16 38 H 0.05 1.83 7.12 -2.39 -0.02 1.82 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.86 7.44 -2.39 -0.02 1.85 16 44 H 0.08 1.93 7.54 -2.39 -0.02 1.91 16 Total: -1.00 -63.95 345.08 2.46 -61.50 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.44 Total: 37.00 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.42 Total: -6.75 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.51 Total: -115.69 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.04 Total: -24.58 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -63.95 2.46 -61.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319330476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.933 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds