Wall clock time and date at job start Mon Mar 30 2020 00:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 C 1.53004 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54855 * 29.27420 * 4 3 2 6 6 C 1.52999 * 117.50133 * 243.60643 * 4 3 2 7 7 C 1.52994 * 117.50248 * 174.98101 * 4 3 2 8 8 H 1.08998 * 117.49893 * 0.02562 * 7 4 3 9 9 C 1.50699 * 117.50229 * 214.98268 * 7 4 3 10 10 O 1.21281 * 119.99763 * 359.97438 * 9 7 4 11 11 N 1.34773 * 120.00143 * 180.02562 * 9 7 4 12 12 C 1.46498 * 120.00094 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47112 * 324.99874 * 12 11 9 14 14 C 1.53000 * 109.47240 * 84.99795 * 12 11 9 15 15 C 1.53003 * 109.47587 * 204.99937 * 12 11 9 16 16 N 1.46502 * 109.46805 * 54.99786 * 15 12 11 17 17 C 1.46503 * 119.99717 * 90.00668 * 16 15 12 18 18 C 1.36936 * 120.00243 * 270.00323 * 16 15 12 19 19 H 1.08001 * 119.99701 * 22.01418 * 18 16 15 20 20 C 1.38812 * 119.99921 * 202.01888 * 18 16 15 21 21 N 1.31614 * 120.00282 * 14.20979 * 20 18 16 22 22 Si 1.86807 * 119.99719 * 194.21148 * 20 18 16 23 23 H 1.48502 * 109.46807 * 89.99859 * 22 20 18 24 24 H 1.48497 * 109.47092 * 209.99555 * 22 20 18 25 25 H 1.48501 * 109.47161 * 329.99896 * 22 20 18 26 26 H 1.08999 * 109.47104 * 300.00483 * 1 2 3 27 27 H 1.08997 * 109.47177 * 60.00678 * 1 2 3 28 28 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47104 * 239.99517 * 2 1 3 30 30 H 1.09010 * 109.46899 * 119.99294 * 2 1 3 31 31 H 1.09008 * 109.47134 * 299.99276 * 3 2 1 32 32 H 1.08999 * 109.47521 * 59.99772 * 3 2 1 33 33 H 1.08997 * 117.49663 * 359.97438 * 6 4 3 34 34 H 1.08999 * 117.49896 * 145.01602 * 6 4 3 35 35 H 0.97001 * 120.00487 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.47128 * 300.00142 * 14 12 11 37 37 H 1.09004 * 109.47004 * 60.00012 * 14 12 11 38 38 H 1.08997 * 109.47630 * 179.97438 * 14 12 11 39 39 H 1.08990 * 109.47364 * 175.00101 * 15 12 11 40 40 H 1.09004 * 109.47023 * 295.00300 * 15 12 11 41 41 H 1.09001 * 109.47072 * 95.13825 * 17 16 15 42 42 H 1.09003 * 109.46541 * 215.13869 * 17 16 15 43 43 H 1.09002 * 109.46983 * 335.13388 * 17 16 15 44 44 H 0.96998 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5846 -0.4799 6 6 4.2760 2.0460 1.2165 7 6 4.2765 2.7943 -0.1180 8 1 3.6513 3.6838 -0.1961 9 6 5.5696 2.8383 -0.8906 10 8 6.0125 1.8256 -1.3897 11 7 6.2344 4.0028 -1.0262 12 6 7.4917 4.0455 -1.7768 13 1 8.0406 3.1170 -1.6192 14 6 7.1904 4.2130 -3.2674 15 6 8.3359 5.2256 -1.2914 16 7 8.5239 5.1278 0.1582 17 6 9.6736 4.3991 0.7002 18 6 7.6252 5.7174 1.0066 19 1 6.6245 5.9373 0.6653 20 6 8.0006 6.0326 2.3054 21 7 9.2730 6.0300 2.6417 22 14 6.6995 6.4605 3.5758 23 1 6.2580 5.2231 4.2681 24 1 7.2692 7.4067 4.5684 25 1 5.5371 7.0916 2.9007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.6504 2.4434 2.0157 34 1 5.2109 1.5854 1.5356 35 1 5.8803 4.8128 -0.6268 36 1 6.5890 3.3723 -3.6133 37 1 6.6415 5.1415 -3.4250 38 1 8.1258 4.2452 -3.8259 39 1 9.3069 5.2055 -1.7859 40 1 7.8261 6.1592 -1.5294 41 1 10.4831 5.0993 0.9065 42 1 9.3833 3.8971 1.6231 43 1 10.0097 3.6589 -0.0259 44 1 9.5352 6.2499 3.5493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322245699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:03 Heat of formation + Delta-G solvation = -13.059879 kcal Electronic energy + Delta-G solvation = -21205.278537 eV Core-core repulsion = 18158.415722 eV Total energy + Delta-G solvation = -3046.862815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62701 -37.40384 -36.08495 -34.03189 -33.80876 -31.34571 -30.10570 -27.51843 -26.19231 -25.61697 -24.06047 -22.02589 -21.64106 -20.56466 -19.90115 -19.58581 -17.15781 -16.39788 -15.64376 -15.27226 -15.05977 -14.72889 -14.27104 -13.83305 -13.73588 -13.37365 -12.99114 -12.90192 -12.80031 -12.24681 -12.14731 -11.96879 -11.89595 -11.61387 -11.36669 -11.09182 -11.01066 -10.90358 -10.86066 -10.84700 -10.40538 -10.31365 -10.07282 -9.99938 -9.88963 -9.86127 -9.24427 -8.57338 -8.37109 -6.76527 -5.74756 -3.20748 3.01699 3.34315 3.39682 3.42355 3.66554 4.11671 4.45797 4.66306 4.89440 4.91391 5.09822 5.12301 5.26077 5.33553 5.42484 5.47517 5.48729 5.62846 5.63744 5.71381 5.78611 5.84884 5.88901 5.95540 5.97517 6.10565 6.16110 6.16946 6.20500 6.23346 6.44140 6.48363 6.48593 6.76518 6.84438 7.19217 7.37795 7.67333 7.76043 8.20606 8.35310 8.84766 9.19880 9.83843 10.33851 11.29637 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.005488 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.558806 B = 5100.452707 C = 6388.249406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.124 4.124 5 H 0.115 0.885 6 C -0.145 4.145 7 C -0.185 4.185 8 H 0.117 0.883 9 C 0.543 3.457 10 O -0.562 6.562 11 N -0.691 5.691 12 C 0.117 3.883 13 H 0.076 0.924 14 C -0.158 4.158 15 C 0.142 3.858 16 N -0.599 5.599 17 C 0.163 3.837 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.904 5.904 22 Si 0.899 3.101 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.403 0.597 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.039 0.961 43 H -0.003 1.003 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 -6.542 -6.300 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.142 4.142 5 H 0.133 0.867 6 C -0.182 4.182 7 C -0.206 4.206 8 H 0.135 0.865 9 C 0.329 3.671 10 O -0.442 6.442 11 N -0.341 5.341 12 C 0.009 3.991 13 H 0.094 0.906 14 C -0.217 4.217 15 C 0.013 3.987 16 N -0.321 5.321 17 C 0.019 3.981 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.729 3.271 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.239 0.761 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.016 0.984 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.771 -7.173 -6.475 15.230 hybrid contribution -0.726 0.761 1.058 1.492 sum -12.497 -6.412 -5.417 15.055 Atomic orbital electron populations 1.21781 0.96067 1.01443 1.01710 1.21499 0.95422 0.96741 1.02291 1.21228 0.92339 0.97065 1.02008 1.22406 0.94215 0.95815 1.01792 0.86693 1.23045 1.02939 1.01947 0.90288 1.22272 0.98070 0.98022 1.02221 0.86457 1.19514 0.84607 0.83502 0.79516 1.90615 1.69158 1.34251 1.50153 1.45873 1.23602 1.10658 1.53966 1.21863 0.85392 1.02402 0.89411 0.90630 1.22121 1.01490 1.01342 0.96751 1.21058 0.96760 0.94602 0.86268 1.43824 1.28338 1.60761 0.99154 1.20777 0.89693 0.92756 0.94910 1.19012 0.91610 1.34325 0.93061 0.91737 1.24969 0.95684 1.00039 0.98788 1.70069 1.13796 1.52567 1.18434 0.86339 0.81034 0.77825 0.81856 1.21478 1.21799 1.20483 0.92821 0.92824 0.92890 0.91881 0.91827 0.91623 0.91736 0.88144 0.88247 0.76064 0.92943 0.92914 0.92146 0.93053 0.93015 0.95099 0.94184 0.98441 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.14 5.89 -26.74 -0.16 -1.30 16 3 C -0.09 -0.93 5.50 -26.73 -0.15 -1.08 16 4 C -0.12 -1.65 5.25 -90.62 -0.48 -2.12 16 5 H 0.12 1.70 7.60 -51.93 -0.39 1.31 16 6 C -0.14 -2.08 9.88 -26.73 -0.26 -2.34 16 7 C -0.18 -2.78 5.91 -91.78 -0.54 -3.33 16 8 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 9 C 0.54 10.05 7.58 -10.99 -0.08 9.97 16 10 O -0.56 -12.02 15.92 5.56 0.09 -11.93 16 11 N -0.69 -12.61 4.49 -53.81 -0.24 -12.85 16 12 C 0.12 2.13 2.88 -67.93 -0.20 1.93 16 13 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 14 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 15 C 0.14 2.78 5.30 -4.04 -0.02 2.76 16 16 N -0.60 -14.48 2.82 -181.11 -0.51 -14.99 16 17 C 0.16 4.05 8.98 59.85 0.54 4.59 16 18 C -0.25 -6.46 8.85 -15.06 -0.13 -6.59 16 19 H 0.06 1.57 6.23 -52.49 -0.33 1.24 16 20 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 21 N -0.90 -25.95 10.72 55.49 0.59 -25.36 16 22 Si 0.90 21.16 29.58 -169.99 -5.03 16.14 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 33 H 0.10 1.27 8.03 -51.93 -0.42 0.85 16 34 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.40 7.21 6.51 -40.82 -0.27 6.94 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 41 H 0.03 0.82 7.36 -51.93 -0.38 0.44 16 42 H 0.04 1.07 7.31 -51.93 -0.38 0.69 16 43 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -30.23 355.82 -8.59 -38.82 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.01 Total: 5.19 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.85 Total: -0.37 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.16 Total: -53.20 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.23 -8.59 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322245699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.757 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds