Wall clock time and date at job start Mon Mar 30 2020 00:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 C 1.53004 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.09001 * 115.54855 * 29.27420 * 4 3 2 6 6 C 1.52999 * 117.50133 * 243.60643 * 4 3 2 7 7 C 1.52994 * 117.50248 * 174.98101 * 4 3 2 8 8 H 1.08998 * 117.49893 * 0.02562 * 7 4 3 9 9 C 1.50699 * 117.50229 * 214.98268 * 7 4 3 10 10 O 1.21281 * 119.99763 * 359.97438 * 9 7 4 11 11 N 1.34773 * 120.00143 * 180.02562 * 9 7 4 12 12 C 1.46498 * 120.00094 * 179.97438 * 11 9 7 13 13 H 1.09004 * 109.47112 * 324.99874 * 12 11 9 14 14 C 1.53000 * 109.47240 * 84.99795 * 12 11 9 15 15 C 1.53003 * 109.47587 * 204.99937 * 12 11 9 16 16 N 1.46502 * 109.46805 * 54.99786 * 15 12 11 17 17 C 1.46503 * 119.99717 * 90.00668 * 16 15 12 18 18 C 1.36936 * 120.00243 * 270.00323 * 16 15 12 19 19 H 1.08001 * 119.99701 * 22.01418 * 18 16 15 20 20 C 1.38812 * 119.99921 * 202.01888 * 18 16 15 21 21 N 1.31614 * 120.00282 * 14.20979 * 20 18 16 22 22 Si 1.86807 * 119.99719 * 194.21148 * 20 18 16 23 23 H 1.48502 * 109.46807 * 89.99859 * 22 20 18 24 24 H 1.48497 * 109.47092 * 209.99555 * 22 20 18 25 25 H 1.48501 * 109.47161 * 329.99896 * 22 20 18 26 26 H 1.08999 * 109.47104 * 300.00483 * 1 2 3 27 27 H 1.08997 * 109.47177 * 60.00678 * 1 2 3 28 28 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47104 * 239.99517 * 2 1 3 30 30 H 1.09010 * 109.46899 * 119.99294 * 2 1 3 31 31 H 1.09008 * 109.47134 * 299.99276 * 3 2 1 32 32 H 1.08999 * 109.47521 * 59.99772 * 3 2 1 33 33 H 1.08997 * 117.49663 * 359.97438 * 6 4 3 34 34 H 1.08999 * 117.49896 * 145.01602 * 6 4 3 35 35 H 0.97001 * 120.00487 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.47128 * 300.00142 * 14 12 11 37 37 H 1.09004 * 109.47004 * 60.00012 * 14 12 11 38 38 H 1.08997 * 109.47630 * 179.97438 * 14 12 11 39 39 H 1.08990 * 109.47364 * 175.00101 * 15 12 11 40 40 H 1.09004 * 109.47023 * 295.00300 * 15 12 11 41 41 H 1.09001 * 109.47072 * 95.13825 * 17 16 15 42 42 H 1.09003 * 109.46541 * 215.13869 * 17 16 15 43 43 H 1.09002 * 109.46983 * 335.13388 * 17 16 15 44 44 H 0.96998 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0403 0.5846 -0.4799 6 6 4.2760 2.0460 1.2165 7 6 4.2765 2.7943 -0.1180 8 1 3.6513 3.6838 -0.1961 9 6 5.5696 2.8383 -0.8906 10 8 6.0125 1.8256 -1.3897 11 7 6.2344 4.0028 -1.0262 12 6 7.4917 4.0455 -1.7768 13 1 8.0406 3.1170 -1.6192 14 6 7.1904 4.2130 -3.2674 15 6 8.3359 5.2256 -1.2914 16 7 8.5239 5.1278 0.1582 17 6 9.6736 4.3991 0.7002 18 6 7.6252 5.7174 1.0066 19 1 6.6245 5.9373 0.6653 20 6 8.0006 6.0326 2.3054 21 7 9.2730 6.0300 2.6417 22 14 6.6995 6.4605 3.5758 23 1 6.2580 5.2231 4.2681 24 1 7.2692 7.4067 4.5684 25 1 5.5371 7.0916 2.9007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.6504 2.4434 2.0157 34 1 5.2109 1.5854 1.5356 35 1 5.8803 4.8128 -0.6268 36 1 6.5890 3.3723 -3.6133 37 1 6.6415 5.1415 -3.4250 38 1 8.1258 4.2452 -3.8259 39 1 9.3069 5.2055 -1.7859 40 1 7.8261 6.1592 -1.5294 41 1 10.4831 5.0993 0.9065 42 1 9.3833 3.8971 1.6231 43 1 10.0097 3.6589 -0.0259 44 1 9.5352 6.2499 3.5493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322245699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:02 Heat of formation + Delta-G solvation = -29.832797 kcal Electronic energy + Delta-G solvation = -21206.005865 eV Core-core repulsion = 18158.415722 eV Total energy + Delta-G solvation = -3047.590143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02504 -38.70891 -37.64408 -35.70575 -34.71201 -33.15716 -31.68358 -28.34764 -28.07481 -27.39294 -25.37093 -23.45474 -22.81344 -21.71765 -21.32265 -20.96042 -18.83270 -18.01933 -17.11941 -16.94335 -16.09005 -16.02133 -15.55014 -15.52206 -15.22556 -14.72295 -14.57722 -14.17676 -13.88275 -13.64508 -13.49705 -13.15495 -13.07208 -12.92597 -12.85316 -12.67986 -12.55541 -12.21704 -12.19746 -12.02077 -11.93732 -11.88583 -11.76491 -11.66390 -11.14169 -10.96436 -10.66788 -10.59434 -9.87642 -8.75400 -7.78222 -5.25948 1.48431 1.50589 1.57687 1.62138 2.33014 2.53590 2.92786 3.35968 3.63459 3.71752 3.81300 3.90235 4.08822 4.20632 4.23396 4.30048 4.39172 4.42647 4.51471 4.64787 4.74736 4.82092 4.82964 4.87405 4.88973 4.94399 4.97702 5.00903 5.07193 5.16474 5.21346 5.27499 5.37491 5.41702 5.41986 5.52753 5.62296 5.67945 5.76142 6.33787 6.74659 7.15951 7.40616 7.88218 8.35023 9.25660 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.005488 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.558806 B = 5100.452707 C = 6388.249406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.108 4.108 5 H 0.095 0.905 6 C -0.149 4.149 7 C -0.194 4.194 8 H 0.143 0.857 9 C 0.535 3.465 10 O -0.598 6.598 11 N -0.692 5.692 12 C 0.123 3.877 13 H 0.046 0.954 14 C -0.146 4.146 15 C 0.142 3.858 16 N -0.613 5.613 17 C 0.178 3.822 18 C -0.245 4.245 19 H 0.083 0.917 20 C -0.056 4.056 21 N -0.942 5.942 22 Si 0.959 3.041 23 H -0.292 1.292 24 H -0.303 1.303 25 H -0.257 1.257 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.020 0.980 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 -5.948 -7.148 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.120 4.120 4 C -0.127 4.127 5 H 0.113 0.887 6 C -0.186 4.186 7 C -0.215 4.215 8 H 0.161 0.839 9 C 0.323 3.677 10 O -0.480 6.480 11 N -0.341 5.341 12 C 0.016 3.984 13 H 0.065 0.935 14 C -0.205 4.205 15 C 0.015 3.985 16 N -0.336 5.336 17 C 0.033 3.967 18 C -0.375 4.375 19 H 0.100 0.900 20 C -0.251 4.251 21 N -0.589 5.589 22 Si 0.788 3.212 23 H -0.219 1.219 24 H -0.230 1.230 25 H -0.181 1.181 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.142 0.858 34 H 0.093 0.907 35 H 0.243 0.757 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.288 -6.568 -7.366 17.365 hybrid contribution 0.099 0.531 1.241 1.354 sum -14.189 -6.036 -6.125 16.592 Atomic orbital electron populations 1.21757 0.94721 1.02075 1.02175 1.21497 0.96566 0.95997 1.01952 1.21239 0.89786 0.97980 1.02996 1.22423 0.95974 0.94073 1.00226 0.88730 1.23094 1.02547 1.02075 0.90906 1.22358 0.96959 1.00013 1.02159 0.83886 1.20120 0.85549 0.82861 0.79204 1.90593 1.70366 1.35355 1.51717 1.45918 1.23452 1.10806 1.53900 1.21684 0.85115 1.00089 0.91557 0.93530 1.22004 1.02605 1.01777 0.94100 1.21233 0.97971 0.95595 0.83658 1.44062 1.27832 1.60578 1.01107 1.20482 0.89451 0.92490 0.94279 1.19470 0.92504 1.32301 0.93192 0.89952 1.25739 0.97294 1.01180 1.00891 1.70241 1.15718 1.54801 1.18173 0.85367 0.79408 0.77056 0.79336 1.21893 1.23031 1.18095 0.92275 0.92419 0.92259 0.92468 0.92066 0.90833 0.90425 0.85827 0.90725 0.75717 0.93875 0.91136 0.90231 0.91684 0.91770 0.97348 0.97263 0.96176 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.12 -2.07 5.89 30.59 0.18 -1.89 16 3 C -0.08 -1.52 5.50 30.59 0.17 -1.36 16 4 C -0.11 -2.74 5.25 -10.79 -0.06 -2.80 16 5 H 0.09 2.81 7.60 -2.39 -0.02 2.79 16 6 C -0.15 -4.10 9.88 30.59 0.30 -3.79 16 7 C -0.19 -5.53 5.91 -11.54 -0.07 -5.60 16 8 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 9 C 0.53 19.49 7.58 87.66 0.66 20.16 16 10 O -0.60 -25.83 15.92 -3.03 -0.05 -25.88 16 11 N -0.69 -24.33 4.49 -442.53 -1.99 -26.31 16 12 C 0.12 4.32 2.88 44.99 0.13 4.45 16 13 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 14 C -0.15 -4.04 9.48 71.98 0.68 -3.36 16 15 C 0.14 5.33 5.30 86.38 0.46 5.79 16 16 N -0.61 -29.34 2.82 -726.92 -2.05 -31.39 16 17 C 0.18 8.99 8.98 127.77 1.15 10.13 16 18 C -0.24 -12.37 8.85 84.03 0.74 -11.63 16 19 H 0.08 3.80 6.23 -2.91 -0.02 3.78 16 20 C -0.06 -3.05 5.08 84.86 0.43 -2.62 16 21 N -0.94 -55.22 10.72 21.65 0.23 -54.99 16 22 Si 0.96 43.22 29.58 68.60 2.03 45.25 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.08 1.26 7.87 -2.39 -0.02 1.24 16 33 H 0.12 2.81 8.03 -2.39 -0.02 2.79 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.41 13.67 6.51 -92.71 -0.60 13.07 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 40 H 0.06 2.27 8.04 -2.38 -0.02 2.25 16 41 H 0.01 0.45 7.36 -2.39 -0.02 0.43 16 42 H 0.01 0.48 7.31 -2.39 -0.02 0.46 16 43 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 44 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -65.76 355.82 4.02 -61.73 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.35 Total: 25.41 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.49 Total: 6.18 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -3.80 Total: -112.69 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -65.76 4.02 -61.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322245699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.901 kcal (2) G-P(sol) polarization free energy of solvation -65.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds