Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47133 * 305.00547 * 4 3 2 6 6 C 1.53007 * 109.46965 * 64.99899 * 4 3 2 7 7 C 1.53002 * 109.47192 * 185.70092 * 6 4 3 8 8 C 1.50702 * 109.47258 * 185.00036 * 4 3 2 9 9 O 1.21277 * 119.99696 * 325.38272 * 8 4 3 10 10 N 1.34775 * 119.99877 * 145.38465 * 8 4 3 11 11 C 1.46503 * 119.99792 * 184.92858 * 10 8 4 12 12 C 1.53002 * 109.47007 * 175.13263 * 11 10 8 13 13 N 1.46503 * 115.54587 * 274.53352 * 12 11 10 14 14 C 1.36938 * 120.00123 * 294.94794 * 13 12 11 15 15 H 1.08000 * 120.00005 * 4.86459 * 14 13 12 16 16 C 1.38809 * 120.00060 * 184.86743 * 14 13 12 17 17 N 1.31613 * 120.00395 * 5.16623 * 16 14 13 18 18 Si 1.86799 * 119.99886 * 185.16996 * 16 14 13 19 19 H 1.48499 * 109.47375 * 64.99615 * 18 16 14 20 20 H 1.48501 * 109.47321 * 184.99755 * 18 16 14 21 21 H 1.48500 * 109.47272 * 304.99811 * 18 16 14 22 22 C 1.52997 * 117.49947 * 128.86472 * 12 11 10 23 23 C 1.52995 * 117.50018 * 60.19990 * 12 11 10 24 24 H 1.08999 * 109.46874 * 60.00463 * 1 2 3 25 25 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47099 * 299.99784 * 1 2 3 27 27 H 1.09004 * 109.47043 * 120.00437 * 2 1 3 28 28 H 1.09006 * 109.47129 * 239.99571 * 2 1 3 29 29 H 1.08994 * 109.47058 * 299.99976 * 3 2 1 30 30 H 1.09003 * 109.46872 * 60.00198 * 3 2 1 31 31 H 1.08994 * 109.47145 * 305.70675 * 6 4 3 32 32 H 1.09000 * 109.46509 * 65.70644 * 6 4 3 33 33 H 1.09002 * 109.47094 * 53.81777 * 7 6 4 34 34 H 1.08994 * 109.46792 * 173.81753 * 7 6 4 35 35 H 1.08997 * 109.47371 * 293.81880 * 7 6 4 36 36 H 0.96997 * 120.00154 * 4.92538 * 10 8 4 37 37 H 1.08996 * 109.47054 * 295.12668 * 11 10 8 38 38 H 1.09002 * 109.47049 * 55.12890 * 11 10 8 39 39 H 0.97004 * 120.00137 * 114.94971 * 13 12 11 40 40 H 0.96998 * 120.00641 * 179.97438 * 17 16 14 41 41 H 1.08998 * 117.50134 * 359.97438 * 22 12 11 42 42 H 1.09006 * 117.49650 * 145.01835 * 22 12 11 43 43 H 1.08997 * 117.49916 * 214.97880 * 23 12 11 44 44 H 1.08992 * 117.50383 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 5.6038 0.7018 -1.2474 8 6 4.0723 2.8579 0.1245 9 8 3.4597 3.7664 -0.3954 10 7 5.2022 3.1142 0.8129 11 6 5.6326 4.4984 1.0254 12 6 6.8658 4.5157 1.9308 13 7 6.5931 4.4982 3.3701 14 6 5.9526 5.5559 3.9586 15 1 5.5786 6.3666 3.3510 16 6 5.7840 5.5859 5.3361 17 7 6.3273 4.6509 6.0862 18 14 4.7858 6.9536 6.1252 19 1 3.3707 6.8496 5.6872 20 1 4.8570 6.8288 7.6032 21 1 5.3363 8.2696 5.7125 22 6 8.0827 5.3099 1.4519 23 6 8.1136 3.7795 1.4392 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.6362 -0.1529 -1.4455 32 1 3.8033 1.4771 -2.1406 33 1 5.8866 0.1492 -0.3514 34 1 5.9570 0.1683 -2.1298 35 1 6.0529 1.6945 -1.2190 36 1 5.7305 2.3821 1.1677 37 1 5.8797 4.9533 0.0662 38 1 4.8271 5.0608 1.4976 39 1 6.8664 3.7374 3.9063 40 1 6.2098 4.6721 7.0488 41 1 8.0049 5.8197 0.4916 42 1 8.6807 5.8191 2.2078 43 1 8.7319 3.2825 2.1866 44 1 8.0559 3.2824 0.4709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323578837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = -31.622301 kcal Electronic energy + Delta-G solvation = -21092.300220 eV Core-core repulsion = 18044.632478 eV Total energy + Delta-G solvation = -3047.667742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81674 -37.66220 -36.10398 -33.82577 -33.13643 -32.89176 -29.71131 -29.29564 -26.78431 -24.31200 -23.87770 -22.63908 -21.90812 -20.86768 -19.73761 -18.89402 -17.14536 -16.93139 -15.71551 -15.38315 -15.19693 -14.96866 -14.37178 -14.17666 -13.80245 -13.68212 -13.28744 -13.10538 -13.06177 -12.87028 -12.10684 -12.05641 -11.87062 -11.79043 -11.45607 -11.07008 -11.03422 -10.96110 -10.90690 -10.84303 -10.79964 -10.47340 -10.28897 -10.26202 -9.70620 -9.53354 -9.26892 -8.83534 -8.56486 -7.06932 -5.83488 -3.13728 2.97733 3.42556 3.47042 3.48353 3.51728 4.41557 4.59119 4.62304 4.77608 4.85458 5.00152 5.08025 5.20023 5.23167 5.29449 5.34153 5.43800 5.47311 5.54978 5.63946 5.67251 5.69202 5.78348 5.82070 5.82265 5.90972 6.03497 6.05582 6.07555 6.13932 6.24443 6.27682 6.34143 6.43003 6.56815 6.68731 6.78412 6.89956 7.69157 7.92456 8.34744 8.60256 9.45612 9.99305 10.34696 11.38212 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.005006 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.407453 B = 5591.907719 C = 6690.619228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.088 0.912 6 C -0.112 4.112 7 C -0.160 4.160 8 C 0.516 3.484 9 O -0.551 6.551 10 N -0.712 5.712 11 C 0.145 3.855 12 C 0.129 3.871 13 N -0.688 5.688 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.284 1.284 22 C -0.187 4.187 23 C -0.187 4.187 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.398 0.602 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -10.775 -13.817 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.128 4.128 5 H 0.106 0.894 6 C -0.150 4.150 7 C -0.218 4.218 8 C 0.302 3.698 9 O -0.429 6.429 10 N -0.362 5.362 11 C 0.020 3.980 12 C 0.035 3.965 13 N -0.328 5.328 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.210 1.210 22 C -0.228 4.228 23 C -0.225 4.225 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.718 -9.942 -14.051 17.610 hybrid contribution -0.058 0.224 1.015 1.041 sum -3.776 -9.718 -13.036 16.692 Atomic orbital electron populations 1.21765 0.95885 1.01340 1.02004 1.21595 0.95888 0.96708 1.02019 1.21443 0.92446 0.96754 1.03439 1.21404 0.97480 0.93936 1.00016 0.89373 1.21525 0.96104 1.01168 0.96205 1.21898 0.95658 1.02262 1.01950 1.20537 0.80385 0.90867 0.78011 1.90659 1.57505 1.47232 1.47500 1.46055 1.25337 1.09460 1.55368 1.21265 0.97352 0.82084 0.97307 1.20175 0.86711 1.02725 0.86871 1.41768 1.69511 1.21710 0.99783 1.19127 1.28731 0.99180 0.89961 0.91031 1.24736 1.01001 0.98698 0.96047 1.69662 1.48159 1.35419 1.04652 0.86262 0.80198 0.81540 0.78201 1.21254 1.21676 1.21003 1.23379 1.04495 0.92955 1.01964 1.23071 1.02090 0.95576 1.01734 0.92756 0.92924 0.92644 0.91954 0.91790 0.90883 0.91529 0.90757 0.91379 0.92322 0.92494 0.92332 0.76770 0.92584 0.90329 0.77804 0.93386 0.89981 0.88616 0.88994 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.16 5.70 -26.73 -0.15 -1.31 16 3 C -0.10 -1.22 4.25 -26.73 -0.11 -1.34 16 4 C -0.11 -1.29 2.18 -91.77 -0.20 -1.49 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 6 C -0.11 -1.12 5.26 -26.73 -0.14 -1.26 16 7 C -0.16 -1.49 9.58 37.16 0.36 -1.13 16 8 C 0.52 8.31 6.06 -10.99 -0.07 8.24 16 9 O -0.55 -10.95 16.37 5.56 0.09 -10.86 16 10 N -0.71 -11.30 5.03 -60.29 -0.30 -11.60 16 11 C 0.15 2.68 5.78 -4.04 -0.02 2.66 16 12 C 0.13 2.47 2.23 -131.82 -0.29 2.18 16 13 N -0.69 -16.56 5.49 -47.23 -0.26 -16.82 16 14 C -0.24 -6.50 9.51 -15.06 -0.14 -6.64 16 15 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.49 13.08 55.49 0.73 -26.76 16 18 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.19 -3.26 10.11 -26.69 -0.27 -3.53 16 23 C -0.19 -2.94 9.82 -26.69 -0.26 -3.20 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 6.45 -51.93 -0.33 0.19 16 29 H 0.07 0.93 8.02 -51.93 -0.42 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.61 6.32 -51.93 -0.33 0.28 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.62 7.28 -51.93 -0.38 0.25 16 36 H 0.40 5.60 8.23 -40.82 -0.34 5.26 16 37 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 38 H 0.08 1.71 7.70 -51.93 -0.40 1.31 16 39 H 0.39 9.87 8.06 -40.82 -0.33 9.54 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 42 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -30.75 358.56 -8.37 -39.12 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -7.97 Total: 12.30 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.04 Total: -8.13 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.16 Total: -55.18 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.75 -8.37 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323578837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.495 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds