Wall clock time and date at job start Mon Mar 30 2020 00:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47133 * 305.00547 * 4 3 2 6 6 C 1.53007 * 109.46965 * 64.99899 * 4 3 2 7 7 C 1.53002 * 109.47192 * 185.70092 * 6 4 3 8 8 C 1.50702 * 109.47258 * 185.00036 * 4 3 2 9 9 O 1.21277 * 119.99696 * 325.38272 * 8 4 3 10 10 N 1.34775 * 119.99877 * 145.38465 * 8 4 3 11 11 C 1.46503 * 119.99792 * 184.92858 * 10 8 4 12 12 C 1.53002 * 109.47007 * 175.13263 * 11 10 8 13 13 N 1.46503 * 115.54587 * 274.53352 * 12 11 10 14 14 C 1.36938 * 120.00123 * 294.94794 * 13 12 11 15 15 H 1.08000 * 120.00005 * 4.86459 * 14 13 12 16 16 C 1.38809 * 120.00060 * 184.86743 * 14 13 12 17 17 N 1.31613 * 120.00395 * 5.16623 * 16 14 13 18 18 Si 1.86799 * 119.99886 * 185.16996 * 16 14 13 19 19 H 1.48499 * 109.47375 * 64.99615 * 18 16 14 20 20 H 1.48501 * 109.47321 * 184.99755 * 18 16 14 21 21 H 1.48500 * 109.47272 * 304.99811 * 18 16 14 22 22 C 1.52997 * 117.49947 * 128.86472 * 12 11 10 23 23 C 1.52995 * 117.50018 * 60.19990 * 12 11 10 24 24 H 1.08999 * 109.46874 * 60.00463 * 1 2 3 25 25 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47099 * 299.99784 * 1 2 3 27 27 H 1.09004 * 109.47043 * 120.00437 * 2 1 3 28 28 H 1.09006 * 109.47129 * 239.99571 * 2 1 3 29 29 H 1.08994 * 109.47058 * 299.99976 * 3 2 1 30 30 H 1.09003 * 109.46872 * 60.00198 * 3 2 1 31 31 H 1.08994 * 109.47145 * 305.70675 * 6 4 3 32 32 H 1.09000 * 109.46509 * 65.70644 * 6 4 3 33 33 H 1.09002 * 109.47094 * 53.81777 * 7 6 4 34 34 H 1.08994 * 109.46792 * 173.81753 * 7 6 4 35 35 H 1.08997 * 109.47371 * 293.81880 * 7 6 4 36 36 H 0.96997 * 120.00154 * 4.92538 * 10 8 4 37 37 H 1.08996 * 109.47054 * 295.12668 * 11 10 8 38 38 H 1.09002 * 109.47049 * 55.12890 * 11 10 8 39 39 H 0.97004 * 120.00137 * 114.94971 * 13 12 11 40 40 H 0.96998 * 120.00641 * 179.97438 * 17 16 14 41 41 H 1.08998 * 117.50134 * 359.97438 * 22 12 11 42 42 H 1.09006 * 117.49650 * 145.01835 * 22 12 11 43 43 H 1.08997 * 117.49916 * 214.97880 * 23 12 11 44 44 H 1.08992 * 117.50383 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 5.6038 0.7018 -1.2474 8 6 4.0723 2.8579 0.1245 9 8 3.4597 3.7664 -0.3954 10 7 5.2022 3.1142 0.8129 11 6 5.6326 4.4984 1.0254 12 6 6.8658 4.5157 1.9308 13 7 6.5931 4.4982 3.3701 14 6 5.9526 5.5559 3.9586 15 1 5.5786 6.3666 3.3510 16 6 5.7840 5.5859 5.3361 17 7 6.3273 4.6509 6.0862 18 14 4.7858 6.9536 6.1252 19 1 3.3707 6.8496 5.6872 20 1 4.8570 6.8288 7.6032 21 1 5.3363 8.2696 5.7125 22 6 8.0827 5.3099 1.4519 23 6 8.1136 3.7795 1.4392 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.6362 -0.1529 -1.4455 32 1 3.8033 1.4771 -2.1406 33 1 5.8866 0.1492 -0.3514 34 1 5.9570 0.1683 -2.1298 35 1 6.0529 1.6945 -1.2190 36 1 5.7305 2.3821 1.1677 37 1 5.8797 4.9533 0.0662 38 1 4.8271 5.0608 1.4976 39 1 6.8664 3.7374 3.9063 40 1 6.2098 4.6721 7.0488 41 1 8.0049 5.8197 0.4916 42 1 8.6807 5.8191 2.2078 43 1 8.7319 3.2825 2.1866 44 1 8.0559 3.2824 0.4709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323578837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:50 Heat of formation + Delta-G solvation = -50.924534 kcal Electronic energy + Delta-G solvation = -21093.137227 eV Core-core repulsion = 18044.632478 eV Total energy + Delta-G solvation = -3048.504750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09635 -39.13266 -37.13976 -35.34994 -34.81205 -33.86612 -31.67130 -30.15778 -28.14670 -25.97038 -25.20116 -23.56451 -23.20033 -21.85572 -21.05892 -20.31971 -19.15247 -18.20938 -17.19276 -16.65259 -16.46297 -16.04212 -15.90386 -15.49332 -15.14727 -14.89631 -14.84636 -14.33325 -14.05083 -13.76063 -13.66388 -13.39882 -12.99815 -12.87380 -12.80793 -12.58368 -12.33026 -12.27702 -12.21152 -11.99557 -11.88141 -11.74657 -11.65960 -11.59131 -11.34453 -10.98753 -10.90121 -10.45783 -9.99497 -9.04408 -7.97940 -5.26375 1.44304 1.46291 1.52123 1.69153 2.24747 2.51224 3.07849 3.35964 3.65344 3.69851 3.79238 3.84801 3.93843 4.18046 4.24813 4.28030 4.30772 4.37663 4.50449 4.61238 4.73537 4.76466 4.80552 4.86687 4.91981 4.92690 5.01575 5.03201 5.08237 5.17495 5.19246 5.25331 5.30566 5.36875 5.38527 5.45067 5.49552 5.52468 5.54931 6.25206 6.65355 7.30795 7.32279 8.04708 8.28417 9.24067 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.005006 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.407453 B = 5591.907719 C = 6690.619228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.102 4.102 4 C -0.100 4.100 5 H 0.105 0.895 6 C -0.106 4.106 7 C -0.160 4.160 8 C 0.511 3.489 9 O -0.594 6.594 10 N -0.705 5.705 11 C 0.158 3.842 12 C 0.100 3.900 13 N -0.698 5.698 14 C -0.234 4.234 15 H 0.067 0.933 16 C -0.066 4.066 17 N -0.963 5.963 18 Si 0.963 3.037 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.186 4.186 23 C -0.151 4.151 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.409 0.591 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 -12.420 -15.326 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.140 4.140 4 C -0.122 4.122 5 H 0.123 0.877 6 C -0.144 4.144 7 C -0.217 4.217 8 C 0.299 3.701 9 O -0.475 6.475 10 N -0.355 5.355 11 C 0.032 3.968 12 C 0.008 3.992 13 N -0.337 5.337 14 C -0.366 4.366 15 H 0.085 0.915 16 C -0.259 4.259 17 N -0.613 5.613 18 Si 0.793 3.207 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.226 4.226 23 C -0.188 4.188 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.207 -11.595 -15.600 19.700 hybrid contribution -0.203 0.746 1.390 1.591 sum -3.410 -10.849 -14.210 18.201 Atomic orbital electron populations 1.21785 0.95662 1.02226 1.01507 1.21567 0.96083 0.94657 1.03217 1.21430 0.92477 0.98443 1.01621 1.21472 0.97374 0.91241 1.02079 0.87724 1.21526 0.96915 1.01861 0.94096 1.21905 0.94749 1.01730 1.03331 1.21345 0.79677 0.92263 0.76814 1.90635 1.58620 1.48977 1.49286 1.45997 1.25615 1.08768 1.55129 1.20942 0.95578 0.83172 0.97124 1.20353 0.87919 1.06446 0.84500 1.41800 1.69473 1.20534 1.01861 1.19370 1.27563 0.99499 0.90139 0.91493 1.25401 1.02742 1.01007 0.96714 1.69785 1.49986 1.37168 1.04381 0.85366 0.78718 0.79547 0.77101 1.21370 1.21831 1.20254 1.23380 1.02383 0.94530 1.02352 1.23152 0.98314 0.94463 1.02877 0.92845 0.91304 0.93665 0.91263 0.89929 0.92217 0.93956 0.88170 0.92716 0.91156 0.90954 0.93910 0.75468 0.91433 0.94521 0.78952 0.93968 0.87616 0.90524 0.88934 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.12 -1.94 5.70 30.59 0.17 -1.76 16 3 C -0.10 -2.36 4.25 30.59 0.13 -2.23 16 4 C -0.10 -2.27 2.18 -11.54 -0.03 -2.30 16 5 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.11 -1.85 5.26 30.60 0.16 -1.68 16 7 C -0.16 -2.47 9.58 71.98 0.69 -1.78 16 8 C 0.51 16.30 6.06 87.66 0.53 16.83 16 9 O -0.59 -24.10 16.37 -3.02 -0.05 -24.15 16 10 N -0.70 -21.79 5.03 -463.06 -2.33 -24.12 16 11 C 0.16 5.80 5.78 86.38 0.50 6.30 16 12 C 0.10 3.75 2.23 3.60 0.01 3.76 16 13 N -0.70 -33.85 5.49 -303.35 -1.66 -35.52 16 14 C -0.23 -12.91 9.51 84.03 0.80 -12.11 16 15 H 0.07 3.68 7.80 -2.91 -0.02 3.66 16 16 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 17 N -0.96 -57.79 13.08 21.65 0.28 -57.51 16 18 Si 0.96 46.70 29.56 68.60 2.03 48.73 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 C -0.19 -6.17 10.11 30.62 0.31 -5.86 16 23 C -0.15 -4.32 9.82 30.62 0.30 -4.02 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.07 6.45 -2.38 -0.02 1.06 16 29 H 0.06 1.53 8.02 -2.39 -0.02 1.51 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.26 6.32 -2.39 -0.02 1.24 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.80 7.28 -2.39 -0.02 0.78 16 36 H 0.41 10.78 8.23 -92.71 -0.76 10.02 16 37 H 0.07 2.31 7.90 -2.39 -0.02 2.29 16 38 H 0.04 1.65 7.70 -2.39 -0.02 1.63 16 39 H 0.38 19.46 8.06 -92.71 -0.75 18.71 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.11 3.00 8.05 -2.39 -0.02 2.98 16 42 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -68.07 358.56 2.49 -65.58 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.54 Total: 36.90 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.76 Total: -9.92 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -3.71 Total: -117.14 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -68.07 2.49 -65.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323578837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.660 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds