Wall clock time and date at job start Mon Mar 30 2020 00:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47402 * 2 1 4 4 C 1.53006 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46918 * 55.00046 * 4 3 2 6 6 C 1.52992 * 109.47072 * 295.00230 * 4 3 2 7 7 C 1.50695 * 109.47179 * 174.99801 * 4 3 2 8 8 O 1.21291 * 119.99686 * 14.83148 * 7 4 3 9 9 N 1.34768 * 120.00267 * 194.82511 * 7 4 3 10 10 C 1.47424 * 125.64847 * 3.66988 * 9 7 4 11 11 C 1.54912 * 104.83471 * 204.08991 * 10 9 7 12 12 C 1.55156 * 101.57862 * 322.98925 * 11 10 9 13 13 C 1.47027 * 125.65255 * 183.62286 * 9 7 4 14 14 H 1.09002 * 109.87520 * 59.40700 * 13 9 7 15 15 C 1.53001 * 109.88087 * 298.39959 * 13 9 7 16 16 N 1.46501 * 109.46784 * 175.91105 * 15 13 9 17 17 C 1.36941 * 119.99690 * 174.89277 * 16 15 13 18 18 H 1.07999 * 120.00269 * 4.97450 * 17 16 15 19 19 C 1.38817 * 119.99909 * 184.97496 * 17 16 15 20 20 N 1.31610 * 119.99758 * 184.68606 * 19 17 16 21 21 Si 1.86800 * 119.99856 * 4.68821 * 19 17 16 22 22 H 1.48497 * 109.47435 * 85.27338 * 21 19 17 23 23 H 1.48504 * 109.46907 * 325.27215 * 21 19 17 24 24 H 1.48497 * 109.46964 * 205.27563 * 21 19 17 25 25 H 1.09002 * 109.47056 * 299.99782 * 1 2 3 26 26 H 1.09001 * 109.47395 * 59.99781 * 1 2 3 27 27 H 1.08998 * 109.47350 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47318 * 239.99737 * 2 1 3 29 29 H 1.09001 * 109.47395 * 120.00219 * 2 1 3 30 30 H 1.09002 * 109.46837 * 60.00085 * 3 2 1 31 31 H 1.09003 * 109.47307 * 299.99981 * 3 2 1 32 32 H 1.09004 * 109.47591 * 65.66338 * 6 4 3 33 33 H 1.09002 * 109.47324 * 185.65947 * 6 4 3 34 34 H 1.09000 * 109.47408 * 305.66387 * 6 4 3 35 35 H 1.09002 * 110.36866 * 322.93132 * 10 9 7 36 36 H 1.09005 * 110.36545 * 85.13978 * 10 9 7 37 37 H 1.08992 * 111.00070 * 81.06206 * 11 10 9 38 38 H 1.08997 * 111.00348 * 204.88106 * 11 10 9 39 39 H 1.08995 * 110.72138 * 277.13739 * 12 11 10 40 40 H 1.08998 * 110.71716 * 153.86520 * 12 11 10 41 41 H 1.09001 * 109.47401 * 55.91597 * 15 13 9 42 42 H 1.08999 * 109.47349 * 295.91343 * 15 13 9 43 43 H 0.97002 * 120.00273 * 354.89998 * 16 15 13 44 44 H 0.97008 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8330 1.3082 7 6 4.0725 2.8577 -0.1232 8 8 3.3172 3.7880 0.0648 9 7 5.3610 3.0899 -0.4428 10 6 6.3637 2.0603 -0.7712 11 6 7.7285 2.7190 -0.4497 12 6 7.4795 4.1844 -0.8948 13 6 5.9993 4.4120 -0.5227 14 1 5.9302 4.9157 0.4415 15 6 5.3156 5.2556 -1.6005 16 7 5.8929 6.6021 -1.6059 17 6 5.5105 7.5071 -2.5598 18 1 4.7258 7.2565 -3.2583 19 6 6.1314 8.7467 -2.6291 20 7 5.7028 9.6506 -3.4843 21 14 7.5755 9.1318 -1.5084 22 1 8.8297 8.6342 -2.1283 23 1 7.3744 8.4670 -0.1958 24 1 7.6701 10.6004 -1.3100 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.8013 -0.2201 1.3510 33 1 5.1647 0.9241 1.3530 34 1 3.6354 1.3606 2.1523 35 1 6.2148 1.1749 -0.1531 36 1 6.3065 1.7984 -1.8278 37 1 7.9460 2.6663 0.6170 38 1 8.5290 2.2637 -1.0327 39 1 7.6279 4.2915 -1.9693 40 1 8.1251 4.8693 -0.3450 41 1 4.2480 5.3189 -1.3896 42 1 5.4664 4.7916 -2.5752 43 1 6.5460 6.8525 -0.9339 44 1 6.1370 10.5167 -3.5330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324131485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:46 Heat of formation + Delta-G solvation = -40.913434 kcal Electronic energy + Delta-G solvation = -21292.653220 eV Core-core repulsion = 18244.582585 eV Total energy + Delta-G solvation = -3048.070636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29931 -37.79772 -35.92549 -34.64846 -32.52344 -31.45455 -31.13651 -29.08319 -26.83815 -25.36222 -24.43359 -22.55890 -21.85445 -21.18277 -20.16100 -18.82687 -17.54648 -16.86106 -16.46585 -15.60802 -14.86178 -14.62718 -14.44597 -14.21246 -13.86041 -13.58346 -13.47987 -13.07121 -12.88466 -12.66802 -12.64553 -12.41847 -12.22761 -12.07275 -11.57748 -11.42949 -11.27222 -11.15084 -11.05427 -10.96938 -10.86361 -10.68522 -10.62903 -10.49039 -10.12278 -9.55882 -9.47211 -8.80604 -8.46245 -7.15192 -5.71179 -3.06192 2.79297 3.04109 3.40242 3.42763 3.48203 4.35492 4.53643 4.56521 4.63910 4.74105 4.80244 4.90548 5.01020 5.06353 5.09373 5.29922 5.33005 5.34217 5.46066 5.49073 5.57590 5.61856 5.64171 5.66012 5.69948 5.77071 5.79667 5.84567 5.90014 5.98127 5.99089 6.04754 6.15195 6.25059 6.31254 6.47060 6.76067 6.98545 7.67967 8.06513 8.35607 8.47802 9.27131 9.98974 10.19648 11.47486 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.004457 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.156259 B = 6281.136656 C = 7116.118857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.105 4.105 5 H 0.090 0.910 6 C -0.143 4.143 7 C 0.527 3.473 8 O -0.527 6.527 9 N -0.612 5.612 10 C 0.097 3.903 11 C -0.134 4.134 12 C -0.125 4.125 13 C 0.126 3.874 14 H 0.073 0.927 15 C 0.149 3.851 16 N -0.752 5.752 17 C -0.239 4.239 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.279 1.279 24 H -0.291 1.291 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.028 0.972 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -24.117 9.123 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.127 4.127 5 H 0.108 0.892 6 C -0.201 4.201 7 C 0.316 3.684 8 O -0.402 6.402 9 N -0.348 5.348 10 C -0.026 4.026 11 C -0.172 4.172 12 C -0.163 4.163 13 C 0.023 3.977 14 H 0.091 0.909 15 C 0.022 3.978 16 N -0.398 5.398 17 C -0.369 4.369 18 H 0.106 0.894 19 C -0.192 4.192 20 N -0.583 5.583 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.206 1.206 24 H -0.218 1.218 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.192 0.808 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.707 -23.527 9.045 25.216 hybrid contribution 1.114 0.468 0.669 1.381 sum 0.407 -23.060 9.715 25.026 Atomic orbital electron populations 1.21763 0.95782 1.01352 1.02133 1.21578 0.96022 0.96674 1.01869 1.21467 0.92214 0.96585 1.03772 1.21289 0.97728 0.93404 1.00266 0.89154 1.21820 1.01216 1.01028 0.96005 1.20340 0.80243 0.91410 0.76449 1.90752 1.54402 1.45567 1.49490 1.48533 1.09409 1.07873 1.68935 1.22391 0.88057 0.91517 1.00613 1.22785 0.96222 0.96344 1.01842 1.22703 0.94722 0.95783 1.03082 1.21834 0.92081 0.83589 1.00182 0.90904 1.20963 0.97059 0.85091 0.94721 1.42562 1.51871 1.09788 1.35571 1.19045 1.15791 0.93902 1.08115 0.89362 1.24680 0.99500 0.96295 0.98739 1.69710 1.43307 1.06104 1.39198 0.86552 0.83928 0.77203 0.80750 1.20983 1.20584 1.21779 0.92665 0.92605 0.92920 0.92114 0.91875 0.90961 0.91235 0.91367 0.92133 0.91959 0.90575 0.91296 0.90855 0.89924 0.89632 0.90250 0.94043 0.95365 0.80793 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.84 16 2 C -0.12 -0.99 5.69 -26.74 -0.15 -1.15 16 3 C -0.10 -1.10 4.01 -26.73 -0.11 -1.21 16 4 C -0.11 -1.11 1.99 -91.77 -0.18 -1.30 16 5 H 0.09 0.80 7.81 -51.93 -0.41 0.40 16 6 C -0.14 -1.20 8.59 37.15 0.32 -0.88 16 7 C 0.53 8.04 6.86 -10.99 -0.08 7.97 16 8 O -0.53 -10.51 14.93 5.55 0.08 -10.43 16 9 N -0.61 -8.72 3.06 -163.01 -0.50 -9.22 16 10 C 0.10 0.97 6.41 -2.53 -0.02 0.95 16 11 C -0.13 -1.30 7.09 -24.58 -0.17 -1.47 16 12 C -0.12 -1.72 6.18 -24.90 -0.15 -1.87 16 13 C 0.13 2.14 2.95 -66.95 -0.20 1.94 16 14 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.15 3.24 5.64 -4.04 -0.02 3.22 16 16 N -0.75 -18.98 5.18 -59.91 -0.31 -19.29 16 17 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 18 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 19 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 20 N -0.93 -30.28 13.97 55.49 0.78 -29.51 16 21 Si 0.89 22.65 27.77 -169.99 -4.72 17.93 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.75 6.50 56.52 0.37 -6.38 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 6.69 -51.93 -0.35 0.10 16 30 H 0.07 0.87 8.09 -51.93 -0.42 0.44 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.43 6.85 -51.93 -0.36 0.08 16 33 H 0.06 0.47 6.25 -51.93 -0.32 0.15 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.57 5.75 -51.93 -0.30 0.28 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.27 7.78 -51.93 -0.40 0.87 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.04 1.02 6.62 -51.93 -0.34 0.68 16 42 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.36 8.71 5.50 -40.82 -0.22 8.49 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -34.94 342.24 -7.95 -42.89 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.78 Total: 4.36 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.65 Total: -1.89 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.03 Total: -58.02 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.72 Total: 17.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.94 -7.95 -42.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324131485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.978 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds