Wall clock time and date at job start Mon Mar 30 2020 00:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47402 * 2 1 4 4 C 1.53006 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46918 * 55.00046 * 4 3 2 6 6 C 1.52992 * 109.47072 * 295.00230 * 4 3 2 7 7 C 1.50695 * 109.47179 * 174.99801 * 4 3 2 8 8 O 1.21291 * 119.99686 * 14.83148 * 7 4 3 9 9 N 1.34768 * 120.00267 * 194.82511 * 7 4 3 10 10 C 1.47424 * 125.64847 * 3.66988 * 9 7 4 11 11 C 1.54912 * 104.83471 * 204.08991 * 10 9 7 12 12 C 1.55156 * 101.57862 * 322.98925 * 11 10 9 13 13 C 1.47027 * 125.65255 * 183.62286 * 9 7 4 14 14 H 1.09002 * 109.87520 * 59.40700 * 13 9 7 15 15 C 1.53001 * 109.88087 * 298.39959 * 13 9 7 16 16 N 1.46501 * 109.46784 * 175.91105 * 15 13 9 17 17 C 1.36941 * 119.99690 * 174.89277 * 16 15 13 18 18 H 1.07999 * 120.00269 * 4.97450 * 17 16 15 19 19 C 1.38817 * 119.99909 * 184.97496 * 17 16 15 20 20 N 1.31610 * 119.99758 * 184.68606 * 19 17 16 21 21 Si 1.86800 * 119.99856 * 4.68821 * 19 17 16 22 22 H 1.48497 * 109.47435 * 85.27338 * 21 19 17 23 23 H 1.48504 * 109.46907 * 325.27215 * 21 19 17 24 24 H 1.48497 * 109.46964 * 205.27563 * 21 19 17 25 25 H 1.09002 * 109.47056 * 299.99782 * 1 2 3 26 26 H 1.09001 * 109.47395 * 59.99781 * 1 2 3 27 27 H 1.08998 * 109.47350 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47318 * 239.99737 * 2 1 3 29 29 H 1.09001 * 109.47395 * 120.00219 * 2 1 3 30 30 H 1.09002 * 109.46837 * 60.00085 * 3 2 1 31 31 H 1.09003 * 109.47307 * 299.99981 * 3 2 1 32 32 H 1.09004 * 109.47591 * 65.66338 * 6 4 3 33 33 H 1.09002 * 109.47324 * 185.65947 * 6 4 3 34 34 H 1.09000 * 109.47408 * 305.66387 * 6 4 3 35 35 H 1.09002 * 110.36866 * 322.93132 * 10 9 7 36 36 H 1.09005 * 110.36545 * 85.13978 * 10 9 7 37 37 H 1.08992 * 111.00070 * 81.06206 * 11 10 9 38 38 H 1.08997 * 111.00348 * 204.88106 * 11 10 9 39 39 H 1.08995 * 110.72138 * 277.13739 * 12 11 10 40 40 H 1.08998 * 110.71716 * 153.86520 * 12 11 10 41 41 H 1.09001 * 109.47401 * 55.91597 * 15 13 9 42 42 H 1.08999 * 109.47349 * 295.91343 * 15 13 9 43 43 H 0.97002 * 120.00273 * 354.89998 * 16 15 13 44 44 H 0.97008 * 120.00001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8330 1.3082 7 6 4.0725 2.8577 -0.1232 8 8 3.3172 3.7880 0.0648 9 7 5.3610 3.0899 -0.4428 10 6 6.3637 2.0603 -0.7712 11 6 7.7285 2.7190 -0.4497 12 6 7.4795 4.1844 -0.8948 13 6 5.9993 4.4120 -0.5227 14 1 5.9302 4.9157 0.4415 15 6 5.3156 5.2556 -1.6005 16 7 5.8929 6.6021 -1.6059 17 6 5.5105 7.5071 -2.5598 18 1 4.7258 7.2565 -3.2583 19 6 6.1314 8.7467 -2.6291 20 7 5.7028 9.6506 -3.4843 21 14 7.5755 9.1318 -1.5084 22 1 8.8297 8.6342 -2.1283 23 1 7.3744 8.4670 -0.1958 24 1 7.6701 10.6004 -1.3100 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.8013 -0.2201 1.3510 33 1 5.1647 0.9241 1.3530 34 1 3.6354 1.3606 2.1523 35 1 6.2148 1.1749 -0.1531 36 1 6.3065 1.7984 -1.8278 37 1 7.9460 2.6663 0.6170 38 1 8.5290 2.2637 -1.0327 39 1 7.6279 4.2915 -1.9693 40 1 8.1251 4.8693 -0.3450 41 1 4.2480 5.3189 -1.3896 42 1 5.4664 4.7916 -2.5752 43 1 6.5460 6.8525 -0.9339 44 1 6.1370 10.5167 -3.5330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324131485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:46 Heat of formation + Delta-G solvation = -64.706228 kcal Electronic energy + Delta-G solvation = -21293.684953 eV Core-core repulsion = 18244.582585 eV Total energy + Delta-G solvation = -3049.102369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45016 -38.96006 -36.88212 -36.57186 -33.86694 -33.17207 -32.07532 -30.63279 -27.57039 -26.85482 -25.64006 -24.02087 -23.22501 -22.11300 -21.28755 -20.22295 -19.36588 -18.05588 -17.62313 -16.52325 -16.42754 -16.16320 -15.62545 -15.39647 -15.24438 -14.95589 -14.75287 -14.33443 -14.06696 -13.99754 -13.64705 -13.47086 -13.25440 -13.12520 -12.91560 -12.79930 -12.76976 -12.22342 -12.20793 -11.99028 -11.92177 -11.84488 -11.81283 -11.73788 -11.58188 -11.42423 -11.05245 -10.65051 -9.67947 -9.37913 -8.08720 -5.44704 1.33491 1.40000 1.46793 1.62737 1.94299 2.44459 3.20776 3.39473 3.59294 3.72862 3.75044 3.84787 3.92852 3.98552 4.23965 4.28450 4.32291 4.36394 4.38544 4.50308 4.62216 4.68615 4.78754 4.79556 4.90678 4.92001 4.97253 5.00084 5.02983 5.08695 5.12096 5.14277 5.24630 5.28473 5.35917 5.42588 5.44758 5.51419 5.67086 6.13871 6.57560 6.99346 7.19047 7.72146 7.96450 9.13057 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.004457 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.156259 B = 6281.136656 C = 7116.118857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.102 4.102 4 C -0.095 4.095 5 H 0.117 0.883 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.090 3.910 11 C -0.118 4.118 12 C -0.125 4.125 13 C 0.131 3.869 14 H 0.057 0.943 15 C 0.155 3.845 16 N -0.748 5.748 17 C -0.245 4.245 18 H 0.044 0.956 19 C -0.061 4.061 20 N -0.983 5.983 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.256 1.256 24 H -0.293 1.293 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.003 0.997 42 H 0.023 0.977 43 H 0.368 0.632 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -27.462 10.888 29.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.140 4.140 4 C -0.117 4.117 5 H 0.135 0.865 6 C -0.195 4.195 7 C 0.306 3.694 8 O -0.469 6.469 9 N -0.346 5.346 10 C -0.031 4.031 11 C -0.156 4.156 12 C -0.163 4.163 13 C 0.026 3.974 14 H 0.075 0.925 15 C 0.027 3.973 16 N -0.395 5.395 17 C -0.376 4.376 18 H 0.062 0.938 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.790 3.210 22 H -0.189 1.189 23 H -0.181 1.181 24 H -0.219 1.219 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.021 0.979 42 H 0.041 0.959 43 H 0.202 0.798 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.163 -26.950 10.818 29.120 hybrid contribution 0.093 1.535 0.032 1.538 sum 2.256 -25.415 10.850 27.726 Atomic orbital electron populations 1.21795 0.96002 1.02197 1.01358 1.21544 0.95835 0.94477 1.03417 1.21445 0.92842 0.98285 1.01438 1.21348 0.97138 0.90358 1.02810 0.86482 1.21834 1.01799 1.02259 0.93617 1.21392 0.80056 0.92897 0.75092 1.90723 1.56130 1.47834 1.52213 1.48696 1.09971 1.07848 1.68040 1.22768 0.86886 0.91397 1.02044 1.22809 0.96730 0.92788 1.03242 1.22677 0.91870 0.99324 1.02427 1.21621 0.94118 0.84417 0.97199 0.92465 1.20940 0.95385 0.84502 0.96459 1.42436 1.51911 1.10467 1.34664 1.18948 1.14937 0.95296 1.08424 0.93818 1.25627 1.02956 0.95721 1.00969 1.69910 1.45095 1.06704 1.41532 0.85303 0.79602 0.76874 0.79222 1.18912 1.18066 1.21892 0.93268 0.93708 0.91178 0.90724 0.89931 0.93056 0.94057 0.88319 0.90849 0.93469 0.86980 0.90358 0.89307 0.86968 0.90923 0.89708 0.97893 0.95942 0.79816 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.12 -1.61 5.69 30.59 0.17 -1.44 16 3 C -0.10 -2.20 4.01 30.60 0.12 -2.08 16 4 C -0.10 -1.85 1.99 -11.54 -0.02 -1.87 16 5 H 0.12 1.67 7.81 -2.39 -0.02 1.65 16 6 C -0.14 -1.83 8.59 71.98 0.62 -1.21 16 7 C 0.52 15.83 6.86 87.66 0.60 16.43 16 8 O -0.59 -25.12 14.93 -3.06 -0.05 -25.16 16 9 N -0.61 -16.76 3.06 -788.04 -2.42 -19.17 16 10 C 0.09 1.44 6.41 86.86 0.56 2.00 16 11 C -0.12 -1.75 7.09 31.99 0.23 -1.52 16 12 C -0.12 -3.15 6.18 31.78 0.20 -2.96 16 13 C 0.13 4.40 2.95 45.34 0.13 4.54 16 14 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 15 C 0.15 7.03 5.64 86.38 0.49 7.52 16 16 N -0.75 -38.75 5.18 -343.44 -1.78 -40.53 16 17 C -0.25 -15.28 10.47 84.03 0.88 -14.40 16 18 H 0.04 3.03 8.06 -2.91 -0.02 3.01 16 19 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 20 N -0.98 -65.65 13.97 21.65 0.30 -65.35 16 21 Si 0.96 46.76 27.77 68.60 1.90 48.67 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.26 -11.31 6.50 99.48 0.65 -10.66 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.86 6.69 -2.39 -0.02 0.85 16 30 H 0.05 1.30 8.09 -2.39 -0.02 1.28 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 0.76 6.85 -2.39 -0.02 0.74 16 33 H 0.07 0.80 6.25 -2.39 -0.01 0.79 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.11 1.05 5.75 -2.39 -0.01 1.04 16 36 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 2.03 7.78 -2.39 -0.02 2.02 16 40 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.00 0.16 6.62 -2.39 -0.02 0.15 16 42 H 0.02 1.04 8.05 -2.39 -0.02 1.02 16 43 H 0.37 17.66 5.50 -92.71 -0.51 17.15 16 44 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 Total: -1.00 -82.74 342.24 3.51 -79.22 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.39 Total: 22.22 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.15 Total: 0.10 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -3.89 Total: -125.05 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.67 kcal Total: -82.74 3.51 -79.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324131485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.517 kcal (2) G-P(sol) polarization free energy of solvation -82.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds