Wall clock time and date at job start Mon Mar 30 2020 00:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46902 * 2 1 4 4 C 1.53002 * 109.47107 * 240.00019 * 2 1 3 5 5 C 1.50702 * 109.47479 * 119.99985 * 2 1 3 6 6 O 1.21290 * 119.99708 * 3.91353 * 5 2 1 7 7 N 1.34768 * 120.00493 * 184.18485 * 5 2 1 8 8 C 1.47029 * 125.64599 * 5.33983 * 7 5 2 9 9 C 1.54323 * 107.27054 * 178.90501 * 8 7 5 10 10 C 1.55158 * 102.94433 * 337.80748 * 9 8 7 11 11 H 1.08996 * 111.00499 * 277.39218 * 10 9 8 12 12 C 1.52999 * 111.00503 * 153.57685 * 10 9 8 13 13 C 1.52998 * 109.47157 * 66.45635 * 12 10 9 14 14 N 1.46500 * 109.47221 * 180.02562 * 13 12 10 15 15 C 1.36931 * 119.99926 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00565 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99818 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00270 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47070 * 89.99556 * 19 17 15 21 21 H 1.48503 * 109.47395 * 209.99968 * 19 17 15 22 22 H 1.48506 * 109.46900 * 329.99826 * 19 17 15 23 23 C 1.47419 * 125.65190 * 185.03391 * 7 5 2 24 24 H 1.09003 * 109.47262 * 299.99865 * 1 2 3 25 25 H 1.08995 * 109.47511 * 60.00281 * 1 2 3 26 26 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47037 * 196.12670 * 3 2 1 28 28 H 1.08994 * 109.47137 * 316.12672 * 3 2 1 29 29 H 1.08999 * 109.47158 * 76.12942 * 3 2 1 30 30 H 1.08994 * 109.47122 * 294.12719 * 4 2 1 31 31 H 1.09001 * 109.46938 * 54.12936 * 4 2 1 32 32 H 1.09001 * 109.47096 * 174.12865 * 4 2 1 33 33 H 1.08999 * 109.88571 * 298.32528 * 8 7 5 34 34 H 1.09001 * 109.87922 * 59.49177 * 8 7 5 35 35 H 1.08996 * 110.71882 * 96.17170 * 9 8 7 36 36 H 1.09004 * 110.72028 * 219.44341 * 9 8 7 37 37 H 1.08999 * 109.47219 * 186.45693 * 12 10 9 38 38 H 1.09004 * 109.46813 * 306.45396 * 12 10 9 39 39 H 1.09000 * 109.46786 * 299.99692 * 13 12 10 40 40 H 1.08995 * 109.46946 * 59.99848 * 13 12 10 41 41 H 0.97007 * 119.99726 * 359.97438 * 14 13 12 42 42 H 0.97001 * 120.00615 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.36844 * 323.00520 * 23 7 5 44 44 H 1.09007 * 110.36799 * 85.32650 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2465 -1.2330 1.9923 7 7 3.3544 -0.7603 1.4872 8 6 4.4033 -0.0752 0.7175 9 6 5.7526 -0.3987 1.3930 10 6 5.3348 -0.7855 2.8364 11 1 5.1929 0.1020 3.4531 12 6 6.3578 -1.7313 3.4686 13 6 7.6816 -0.9908 3.6685 14 7 8.6614 -1.8967 4.2733 15 6 9.9273 -1.4522 4.5467 16 1 10.2037 -0.4339 4.3162 17 6 10.8555 -2.3103 5.1203 18 7 10.5186 -3.5511 5.4018 19 14 12.5823 -1.7038 5.4940 20 1 12.6230 -1.1417 6.8679 21 1 13.5374 -2.8366 5.3940 22 1 12.9593 -0.6508 4.5170 23 6 3.9880 -1.5057 2.5901 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0918 1.4560 -0.2855 28 1 1.4626 2.0320 -0.7122 29 1 1.9287 1.8672 0.9977 30 1 1.7651 -1.7747 -1.1982 31 1 1.5933 -0.2717 -2.1361 32 1 3.1249 -0.6311 -1.3034 33 1 4.4065 -0.4389 -0.3100 34 1 4.2303 1.0009 0.7316 35 1 6.2418 -1.2362 0.8957 36 1 6.4000 0.4782 1.4009 37 1 5.9856 -2.0770 4.4330 38 1 6.5156 -2.5871 2.8122 39 1 8.0538 -0.6453 2.7041 40 1 7.5237 -0.1351 4.3249 41 1 8.4132 -2.8114 4.4801 42 1 11.1670 -4.1508 5.8029 43 1 3.3654 -1.4629 3.4837 44 1 4.1622 -2.5411 2.2973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326417303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:58 Heat of formation + Delta-G solvation = -59.435078 kcal Electronic energy + Delta-G solvation = -20860.728488 eV Core-core repulsion = 17811.854694 eV Total energy + Delta-G solvation = -3048.873795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58372 -39.11111 -36.89381 -36.65672 -34.46189 -32.54126 -30.65005 -29.15263 -28.28412 -27.88599 -26.01143 -24.67309 -23.22848 -22.19595 -21.23303 -19.85935 -19.11070 -17.67682 -17.29131 -16.69916 -16.46908 -16.02962 -15.62193 -15.36600 -15.23361 -14.83151 -14.60291 -14.30659 -14.08389 -13.92179 -13.33235 -13.15677 -13.12316 -13.09405 -12.90360 -12.80588 -12.77916 -12.58365 -12.28432 -12.16481 -11.99029 -11.90545 -11.77817 -11.53902 -11.49791 -11.38759 -10.91219 -10.71606 -9.65120 -8.99286 -7.94842 -5.23980 1.48022 1.50144 1.56888 1.58569 1.95924 2.56903 3.32004 3.39192 3.57151 3.65869 3.76925 3.87408 3.92656 4.16050 4.22994 4.27531 4.34544 4.46564 4.53149 4.60492 4.68637 4.72053 4.77859 4.79590 4.81786 4.86936 4.89855 4.95375 5.00057 5.03543 5.13204 5.21003 5.22965 5.28531 5.34919 5.38661 5.41977 5.46852 5.50552 6.27878 6.51166 7.09640 7.33507 8.10925 8.32665 9.29100 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.050114 B = 0.003000 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.592027 B = 9331.478775 C = 9584.887789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.142 4.142 5 C 0.526 3.474 6 O -0.594 6.594 7 N -0.615 5.615 8 C 0.089 3.911 9 C -0.126 4.126 10 C -0.084 4.084 11 H 0.087 0.913 12 C -0.102 4.102 13 C 0.154 3.846 14 N -0.751 5.751 15 C -0.245 4.245 16 H 0.078 0.922 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.975 3.025 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.108 3.892 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.017 0.983 41 H 0.372 0.628 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 11.162 -16.564 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.206 4.206 4 C -0.199 4.199 5 C 0.317 3.683 6 O -0.474 6.474 7 N -0.347 5.347 8 C -0.032 4.032 9 C -0.163 4.163 10 C -0.104 4.104 11 H 0.105 0.895 12 C -0.141 4.141 13 C 0.028 3.972 14 N -0.394 5.394 15 C -0.377 4.377 16 H 0.096 0.904 17 C -0.271 4.271 18 N -0.623 5.623 19 Si 0.804 3.196 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.191 1.191 23 C -0.015 4.015 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.785 11.042 -16.209 26.476 hybrid contribution 0.827 -0.694 1.003 1.474 sum -16.958 10.348 -15.206 25.018 Atomic orbital electron populations 1.21681 0.92082 1.01975 1.02573 1.20828 0.97749 0.97421 0.92280 1.22144 1.03399 0.92293 1.02720 1.21983 1.02547 0.99653 0.95733 1.21125 0.80265 0.79430 0.87497 1.90666 1.55766 1.49821 1.51191 1.48571 1.05816 1.49570 1.30742 1.22740 0.85746 0.98536 0.96190 1.22784 0.96301 1.03476 0.93775 1.22109 0.92400 0.98329 0.97522 0.89488 1.21491 0.93868 0.98155 1.00557 1.20793 0.88349 0.92444 0.95571 1.42661 1.09907 1.12216 1.74607 1.19671 0.89193 0.96476 1.32333 0.90401 1.25621 1.02618 0.96218 1.02669 1.69824 1.35771 1.06276 1.50461 0.85113 0.79495 0.76951 0.78055 1.21491 1.22221 1.19086 1.22185 0.93443 0.95753 0.90140 0.93539 0.89139 0.93618 0.89474 0.89293 0.93439 0.93597 0.88931 0.90492 0.88811 0.88536 0.90333 0.88338 0.92669 0.91848 0.95014 0.96476 0.79632 0.94014 0.92155 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.71 71.98 0.55 -1.52 16 2 C -0.08 -1.28 0.75 -52.93 -0.04 -1.32 16 3 C -0.15 -1.64 7.69 71.98 0.55 -1.09 16 4 C -0.14 -1.69 8.27 71.98 0.59 -1.09 16 5 C 0.53 13.13 6.51 87.66 0.57 13.70 16 6 O -0.59 -20.38 16.21 -3.06 -0.05 -20.43 16 7 N -0.61 -13.55 3.32 -812.21 -2.70 -16.24 16 8 C 0.09 1.32 5.11 86.73 0.44 1.76 16 9 C -0.13 -2.26 5.60 31.78 0.18 -2.09 16 10 C -0.08 -1.96 3.06 -9.48 -0.03 -1.99 16 11 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 12 C -0.10 -3.12 4.84 30.59 0.15 -2.97 16 13 C 0.15 5.90 6.11 86.38 0.53 6.43 16 14 N -0.75 -38.37 5.60 -343.47 -1.92 -40.30 16 15 C -0.24 -13.71 9.99 84.04 0.84 -12.87 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 18 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 19 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C 0.11 2.69 6.40 86.78 0.56 3.25 16 24 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 0.90 8.06 -2.38 -0.02 0.88 16 27 H 0.09 0.70 4.98 -2.39 -0.01 0.69 16 28 H 0.09 0.64 8.04 -2.39 -0.02 0.62 16 29 H 0.05 0.66 8.03 -2.39 -0.02 0.64 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.75 5.12 -2.39 -0.01 0.74 16 33 H 0.09 1.05 5.60 -2.39 -0.01 1.03 16 34 H 0.10 1.09 5.69 -2.39 -0.01 1.08 16 35 H 0.08 1.49 8.01 -2.39 -0.02 1.47 16 36 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.96 8.11 -2.38 -0.02 1.94 16 39 H 0.03 1.16 7.51 -2.39 -0.02 1.14 16 40 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.37 20.34 7.67 -92.70 -0.71 19.63 16 42 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.06 1.71 7.99 -2.39 -0.02 1.69 16 44 H 0.07 1.68 8.03 -2.38 -0.02 1.66 16 Total: -1.00 -72.34 340.68 3.26 -69.08 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.26 Total: 23.63 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.36 Total: -3.91 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -4.34 Total: -116.42 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.34 3.26 -69.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326417303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.643 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds