Wall clock time and date at job start Mon Mar 30 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47409 * 2 1 4 4 C 1.52997 * 109.47188 * 240.00264 * 2 1 3 5 5 N 1.46903 * 109.47267 * 120.00347 * 2 1 3 6 6 C 1.46898 * 110.99886 * 59.99446 * 5 2 1 7 7 C 1.50704 * 109.47194 * 180.02562 * 6 5 2 8 8 O 1.21285 * 119.99847 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00168 * 180.02562 * 7 6 5 10 10 C 1.46931 * 120.63030 * 359.97438 * 9 7 6 11 11 C 1.53200 * 108.77279 * 126.37310 * 10 9 7 12 12 C 1.53039 * 109.31160 * 54.63574 * 11 10 9 13 13 C 1.53046 * 109.52798 * 298.64112 * 12 11 10 14 14 H 1.08994 * 109.49581 * 301.40708 * 13 12 11 15 15 C 1.50700 * 109.49577 * 181.31010 * 13 12 11 16 16 H 1.07999 * 120.00091 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99871 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99744 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00059 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47225 * 89.99840 * 19 17 15 21 21 H 1.48495 * 109.47370 * 209.99931 * 19 17 15 22 22 H 1.48502 * 109.47021 * 329.99933 * 19 17 15 23 23 C 1.46928 * 120.63178 * 179.97438 * 9 7 6 24 24 H 1.09004 * 109.47087 * 299.99842 * 1 2 3 25 25 H 1.08998 * 109.46872 * 59.99630 * 1 2 3 26 26 H 1.09003 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47565 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47195 * 300.00534 * 3 2 1 29 29 H 1.09004 * 109.46867 * 60.00023 * 3 2 1 30 30 H 1.09003 * 109.46861 * 300.00361 * 4 2 1 31 31 H 1.09002 * 109.47679 * 59.99777 * 4 2 1 32 32 H 1.08995 * 109.47293 * 180.02562 * 4 2 1 33 33 H 1.00907 * 110.99695 * 296.04764 * 5 2 1 34 34 H 1.09002 * 109.46980 * 60.00735 * 6 5 2 35 35 H 1.08996 * 109.47817 * 300.00763 * 6 5 2 36 36 H 1.08998 * 109.58425 * 6.59260 * 10 9 7 37 37 H 1.08995 * 109.70793 * 246.22878 * 10 9 7 38 38 H 1.08997 * 109.49280 * 294.68615 * 11 10 9 39 39 H 1.08996 * 109.52417 * 174.60413 * 11 10 9 40 40 H 1.09002 * 109.46050 * 58.65698 * 12 11 10 41 41 H 1.09004 * 109.46034 * 178.62914 * 12 11 10 42 42 H 0.97002 * 119.99462 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.58766 * 353.41859 * 23 9 7 44 44 H 1.08998 * 109.58326 * 113.83934 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0197 -0.6926 1.1994 6 6 1.5486 -2.0835 1.2333 7 6 2.0692 -2.7601 2.4752 8 8 2.7639 -2.1440 3.2555 9 7 1.7628 -4.0498 2.7188 10 6 0.9219 -4.8090 1.7833 11 6 1.6578 -6.0941 1.3905 12 6 2.0431 -6.8636 2.6559 13 6 2.9843 -6.0089 3.5078 14 1 3.8719 -5.7568 2.9277 15 6 3.3888 -6.7798 4.7380 16 1 3.0127 -7.7797 4.8965 17 6 4.2389 -6.2085 5.6610 18 7 4.6972 -4.9911 5.4676 19 14 4.7409 -7.1643 7.1854 20 1 5.9743 -7.9403 6.8993 21 1 4.9989 -6.2180 8.3003 22 1 3.6485 -8.0945 7.5684 23 6 2.2634 -4.7232 3.9249 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1299 -0.7216 -1.2490 33 1 1.7502 -0.1990 2.0373 34 1 1.9121 -2.6118 0.3519 35 1 0.4587 -2.0980 1.2418 36 1 0.7329 -4.2095 0.8928 37 1 -0.0244 -5.0616 2.2615 38 1 2.5579 -5.8410 0.8303 39 1 1.0066 -6.7124 0.7727 40 1 1.1446 -7.0948 3.2281 41 1 2.5454 -7.7904 2.3785 42 1 5.2951 -4.5891 6.1171 43 1 2.9593 -4.0670 4.4477 44 1 1.4274 -4.9687 4.5799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328779572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:24 Heat of formation + Delta-G solvation = -68.232959 kcal Electronic energy + Delta-G solvation = -21636.578503 eV Core-core repulsion = 18587.323204 eV Total energy + Delta-G solvation = -3049.255299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07136 -39.13983 -38.07435 -35.30105 -33.51323 -32.81681 -31.49212 -28.53449 -28.14638 -27.73513 -26.76014 -25.19379 -23.40230 -21.43253 -20.14497 -19.74571 -18.56859 -17.87653 -17.14113 -16.54338 -16.50718 -15.98266 -15.57464 -15.22775 -15.06092 -14.78549 -14.50298 -14.39082 -14.16112 -13.76720 -13.61913 -13.42669 -12.93211 -12.88930 -12.74027 -12.68977 -12.57997 -12.37149 -12.25803 -12.22585 -11.93397 -11.80706 -11.62556 -11.57217 -11.09801 -10.93513 -10.57972 -10.47917 -9.39698 -9.28134 -8.10878 -6.28574 1.39744 1.40652 1.51599 1.79084 2.19774 2.42065 3.15776 3.22451 3.70218 3.92312 4.05328 4.06817 4.18823 4.26516 4.30881 4.36015 4.42872 4.61296 4.72783 4.75177 4.77768 4.82333 4.87717 4.91407 4.94968 5.02827 5.04527 5.11035 5.22537 5.26868 5.29677 5.37200 5.37881 5.46799 5.55716 5.66497 5.90359 6.00507 6.10228 6.33915 6.39195 6.75182 6.85086 7.40128 7.44046 8.92368 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.004579 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.775604 B = 6112.947272 C = 6775.521324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 C -0.137 4.137 4 C -0.141 4.141 5 N -0.684 5.684 6 C 0.056 3.944 7 C 0.491 3.509 8 O -0.585 6.585 9 N -0.613 5.613 10 C 0.104 3.896 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.016 1.016 15 C -0.537 4.537 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.916 5.916 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.126 3.874 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.342 0.658 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.105 0.895 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.259 0.741 43 H 0.073 0.927 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 6.604 -15.053 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.010 3.990 3 C -0.194 4.194 4 C -0.198 4.198 5 N -0.317 5.317 6 C -0.076 4.076 7 C 0.280 3.720 8 O -0.465 6.465 9 N -0.346 5.346 10 C -0.018 4.018 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.018 3.982 14 H 0.002 0.998 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.555 5.555 19 Si 0.783 3.217 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.185 1.185 23 C 0.003 3.997 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.343 6.896 -14.855 19.922 hybrid contribution 0.029 -0.301 1.652 1.679 sum -11.314 6.595 -13.203 18.597 Atomic orbital electron populations 1.22533 0.95672 1.02588 1.02962 1.21132 0.93262 0.94559 0.89996 1.21805 1.01233 0.93937 1.02443 1.21919 1.01156 1.00497 0.96276 1.60336 1.64365 1.01230 1.05760 1.21848 0.99519 0.91020 0.95197 1.21479 0.80217 0.81983 0.88331 1.90679 1.39877 1.65278 1.50657 1.48547 1.50749 1.10891 1.24406 1.22002 0.93306 0.93333 0.93181 1.21921 1.00648 0.96576 0.97371 1.21514 0.98775 0.98010 0.96005 1.18904 0.92820 0.92132 0.94300 0.99818 1.21545 1.28262 1.01240 1.06536 0.91970 1.25918 0.95965 0.95697 1.01475 1.70109 1.33219 1.15311 1.36830 0.85554 0.78884 0.78396 0.78842 1.20073 1.21391 1.18483 1.21634 0.96435 0.96116 0.85480 0.92979 0.90253 0.91903 0.93139 0.90033 0.92943 0.92172 0.90157 0.93337 0.83902 0.86759 0.89621 0.87194 0.90144 0.93126 0.87636 0.92460 0.93093 0.93206 0.90824 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 8.23 71.98 0.59 -2.09 16 2 C 0.10 1.94 0.97 3.52 0.00 1.94 16 3 C -0.14 -2.45 8.73 71.98 0.63 -1.82 16 4 C -0.14 -2.45 8.24 71.98 0.59 -1.85 16 5 N -0.68 -18.91 5.71 -474.16 -2.71 -21.62 16 6 C 0.06 1.51 3.73 85.56 0.32 1.83 16 7 C 0.49 19.93 7.74 87.66 0.68 20.61 16 8 O -0.59 -30.54 15.62 -3.04 -0.05 -30.59 16 9 N -0.61 -24.49 2.97 -818.89 -2.43 -26.93 16 10 C 0.10 2.83 6.34 86.36 0.55 3.37 16 11 C -0.13 -3.66 6.08 30.67 0.19 -3.48 16 12 C -0.11 -4.07 5.11 30.62 0.16 -3.92 16 13 C 0.04 1.94 2.25 -11.46 -0.03 1.91 16 14 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 15 C -0.54 -30.16 8.56 25.60 0.22 -29.94 16 16 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 17 C 0.01 0.50 5.30 84.66 0.45 0.95 16 18 N -0.92 -57.18 11.40 21.45 0.24 -56.94 16 19 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 C 0.13 6.42 5.40 86.36 0.47 6.88 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.89 6.41 -2.39 -0.02 0.87 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.97 6.40 -2.39 -0.02 0.96 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.34 10.20 8.42 -89.69 -0.76 9.45 16 34 H 0.11 2.74 5.85 -2.39 -0.01 2.72 16 35 H 0.09 1.80 6.10 -2.39 -0.01 1.78 16 36 H 0.11 2.11 5.93 -2.39 -0.01 2.09 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.07 4.53 5.13 -2.39 -0.01 4.51 16 44 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -74.71 337.52 2.11 -72.60 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.21 Total: 22.02 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.81 Total: -5.60 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.90 Total: -105.49 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.71 2.11 -72.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328779572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.366 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds