Wall clock time and date at job start Mon Mar 30 2020 00:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 C 1.52996 * 109.47105 * 119.99799 * 2 1 3 5 5 N 1.46907 * 109.47145 * 175.00050 * 4 2 1 6 6 C 1.48556 * 110.99982 * 285.41887 * 5 4 2 7 7 C 1.54381 * 104.59449 * 200.95770 * 6 5 4 8 8 C 1.54263 * 105.05971 * 23.85603 * 7 6 5 9 9 C 1.48561 * 110.99708 * 170.00147 * 5 4 2 10 10 H 1.08997 * 110.51419 * 40.21454 * 9 5 4 11 11 C 1.50706 * 110.41344 * 277.81729 * 9 5 4 12 12 O 1.21290 * 119.99685 * 338.12786 * 11 9 5 13 13 N 1.34772 * 119.99885 * 158.11976 * 11 9 5 14 14 C 1.46497 * 120.00375 * 355.19699 * 13 11 9 15 15 C 1.46502 * 119.99812 * 175.18820 * 13 11 9 16 16 C 1.50697 * 109.46858 * 90.00165 * 15 13 11 17 17 H 1.07995 * 120.00536 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99649 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47455 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47176 * 300.00221 * 20 18 16 23 23 H 1.48506 * 109.47370 * 60.00203 * 20 18 16 24 24 H 1.08998 * 109.47815 * 300.00086 * 1 2 3 25 25 H 1.09004 * 109.47305 * 60.00348 * 1 2 3 26 26 H 1.08998 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47543 * 240.00388 * 2 1 3 28 28 H 1.08997 * 109.47700 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47238 * 300.00043 * 3 2 1 30 30 H 1.09003 * 109.47214 * 59.99497 * 3 2 1 31 31 H 1.08996 * 109.47116 * 55.00261 * 4 2 1 32 32 H 1.09001 * 109.47593 * 294.99971 * 4 2 1 33 33 H 1.08998 * 110.40961 * 82.18570 * 6 5 4 34 34 H 1.08995 * 110.51795 * 319.79094 * 6 5 4 35 35 H 1.09000 * 110.32368 * 264.96352 * 7 6 5 36 36 H 1.08999 * 110.40983 * 142.79593 * 7 6 5 37 37 H 1.08997 * 110.32154 * 241.10249 * 8 7 6 38 38 H 1.08995 * 110.41064 * 118.93769 * 8 7 6 39 39 H 1.09004 * 109.46554 * 274.83402 * 14 13 11 40 40 H 1.08999 * 109.47148 * 34.83100 * 14 13 11 41 41 H 1.08990 * 109.47486 * 154.83423 * 14 13 11 42 42 H 1.09000 * 109.47234 * 330.00394 * 15 13 11 43 43 H 1.09000 * 109.47159 * 210.00432 * 15 13 11 44 44 H 0.96995 * 119.99907 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 3.9243 -1.8627 0.2123 7 6 5.3611 -2.2368 0.6352 8 6 5.4478 -1.8679 2.1305 9 6 4.0559 -1.3018 2.4852 10 1 3.4236 -2.0835 2.9061 11 6 4.1865 -0.1545 3.4537 12 8 4.2469 0.9841 3.0404 13 7 4.2360 -0.3939 4.7791 14 6 4.0574 -1.7573 5.2845 15 6 4.4685 0.7094 5.7145 16 6 3.1472 1.3053 6.1268 17 1 2.2263 0.9023 5.7320 18 6 3.1140 2.3645 7.0090 19 7 4.2353 2.8550 7.4901 20 14 1.4761 3.1027 7.5206 21 1 1.7118 4.2212 8.4686 22 1 0.7666 3.6133 6.3201 23 1 0.6478 2.0610 8.1794 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -1.7197 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9196 -1.4552 -0.7987 34 1 3.2712 -2.7331 0.2734 35 1 6.0869 -1.6613 0.0606 36 1 5.5318 -3.3046 0.4982 37 1 6.2160 -1.1113 2.2898 38 1 5.6599 -2.7538 2.7290 39 1 2.9935 -1.9673 5.3947 40 1 4.4967 -2.4656 4.5822 41 1 4.5488 -1.8532 6.2526 42 1 5.0767 1.4738 5.2308 43 1 4.9891 0.3349 6.5959 44 1 5.0858 2.4714 7.2247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335756188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:29 Heat of formation + Delta-G solvation = -41.889840 kcal Electronic energy + Delta-G solvation = -21939.957717 eV Core-core repulsion = 18891.844741 eV Total energy + Delta-G solvation = -3048.112976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.92524 -37.81502 -35.54265 -34.81307 -32.80097 -31.15343 -29.54997 -27.25021 -26.90597 -25.68722 -25.23743 -23.23506 -21.45015 -21.22401 -19.57033 -18.48511 -17.04330 -16.59627 -16.10831 -15.42212 -14.87418 -14.56491 -14.11272 -14.06708 -13.67520 -13.49074 -13.11863 -12.98773 -12.76780 -12.34436 -12.21918 -12.07481 -11.84439 -11.71679 -11.54931 -11.42975 -11.23653 -11.15409 -10.87150 -10.76367 -10.64715 -10.55918 -10.54719 -10.37665 -10.07945 -9.08516 -8.90766 -8.35372 -8.25011 -7.55748 -6.35100 -4.06372 3.35588 3.44439 3.49118 3.65638 3.69780 4.23449 4.56087 4.64417 4.67746 4.89745 4.99209 5.09638 5.19060 5.23630 5.31801 5.40519 5.45030 5.49366 5.58035 5.63800 5.73566 5.74766 5.78526 5.83795 5.87903 5.93415 6.00569 6.08671 6.10762 6.14003 6.17439 6.26302 6.49057 6.73574 6.78699 6.93985 7.10846 7.16209 7.46999 8.07974 8.35802 8.47222 8.81689 9.13548 9.62910 11.02154 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.006178 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.057281 B = 4530.928022 C = 5617.305514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.137 4.137 4 C 0.050 3.950 5 N -0.481 5.481 6 C 0.033 3.967 7 C -0.121 4.121 8 C -0.110 4.110 9 C 0.044 3.956 10 H 0.065 0.935 11 C 0.514 3.486 12 O -0.513 6.513 13 N -0.604 5.604 14 C 0.088 3.912 15 C 0.239 3.761 16 C -0.602 4.602 17 H 0.049 0.951 18 C 0.019 3.981 19 N -0.910 5.910 20 Si 1.070 2.930 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.289 1.289 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.031 0.969 43 H 0.020 0.980 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 -13.336 -13.531 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.194 4.194 4 C -0.078 4.078 5 N -0.205 5.205 6 C -0.095 4.095 7 C -0.159 4.159 8 C -0.148 4.148 9 C -0.068 4.068 10 H 0.083 0.917 11 C 0.298 3.702 12 O -0.387 6.387 13 N -0.337 5.337 14 C -0.057 4.057 15 C 0.119 3.881 16 C -0.641 4.641 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.547 5.547 20 Si 0.898 3.102 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.215 1.215 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.410 -10.980 -12.930 17.133 hybrid contribution 0.192 -2.184 -0.576 2.266 sum -2.218 -13.164 -13.505 18.989 Atomic orbital electron populations 1.21835 0.95461 1.01217 1.02012 1.21003 0.94742 0.97548 0.97061 1.21697 1.02679 0.94428 1.00619 1.22379 0.87125 0.98646 0.99674 1.65065 1.10238 1.41865 1.03285 1.23145 0.95562 0.93255 0.97573 1.22272 0.96973 1.00791 0.95826 1.22184 0.95717 1.00695 0.96248 1.22682 0.97221 0.95369 0.91504 0.91706 1.19951 0.78101 0.89744 0.82362 1.90674 1.48031 1.22591 1.77453 1.47955 1.70848 1.08838 1.06097 1.21604 1.00790 0.83660 0.99610 1.19316 0.97563 0.84484 0.86757 1.22229 0.92669 1.19313 1.29892 0.93241 1.25793 1.04346 0.94357 0.94002 1.70803 0.98270 1.42123 1.43478 0.83528 0.73996 0.76291 0.76360 1.20639 1.21409 1.21516 0.92434 0.92621 0.93187 0.91742 0.91117 0.94011 0.92729 0.95021 0.90409 0.89977 0.94047 0.90808 0.91316 0.90500 0.90889 0.93522 0.92827 0.91296 0.95059 0.96218 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.19 37.15 0.34 -1.33 16 2 C -0.08 -1.10 2.97 -90.62 -0.27 -1.37 16 3 C -0.14 -2.04 9.08 37.16 0.34 -1.71 16 4 C 0.05 0.74 4.17 -3.82 -0.02 0.72 16 5 N -0.48 -7.38 4.10 -223.50 -0.92 -8.30 16 6 C 0.03 0.38 5.90 -2.18 -0.01 0.36 16 7 C -0.12 -1.28 7.00 -25.35 -0.18 -1.46 16 8 C -0.11 -1.43 6.25 -25.35 -0.16 -1.59 16 9 C 0.04 0.71 1.71 -67.22 -0.11 0.59 16 10 H 0.07 0.94 6.75 -51.93 -0.35 0.59 16 11 C 0.51 11.08 6.40 -10.98 -0.07 11.01 16 12 O -0.51 -13.46 16.26 5.55 0.09 -13.37 16 13 N -0.60 -13.20 2.86 -182.96 -0.52 -13.72 16 14 C 0.09 1.44 9.89 59.85 0.59 2.03 16 15 C 0.24 6.35 4.48 -5.19 -0.02 6.32 16 16 C -0.60 -17.65 9.39 -34.44 -0.32 -17.97 16 17 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 18 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 19 N -0.91 -28.21 13.65 55.43 0.76 -27.46 16 20 Si 1.07 26.13 29.90 -169.99 -5.08 21.04 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.76 7.28 -51.93 -0.38 0.38 16 28 H 0.07 1.19 7.75 -51.93 -0.40 0.79 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.41 7.77 -51.93 -0.40 0.01 16 32 H 0.08 1.40 7.78 -51.93 -0.40 1.00 16 33 H 0.08 0.89 7.73 -51.93 -0.40 0.49 16 34 H 0.04 0.43 7.75 -51.93 -0.40 0.03 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.14 7.85 -51.93 -0.41 0.74 16 38 H 0.07 0.78 7.61 -51.93 -0.40 0.39 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.69 5.94 -51.93 -0.31 0.38 16 41 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 42 H 0.03 0.93 7.36 -51.93 -0.38 0.54 16 43 H 0.02 0.52 7.73 -51.93 -0.40 0.12 16 44 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -34.17 347.29 -8.36 -42.53 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.93 Total: -2.04 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 0.01 Total: -3.92 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.68 Total: -49.48 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.17 -8.36 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335756188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.641 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds