Wall clock time and date at job start Mon Mar 30 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 C 1.52996 * 109.47105 * 119.99799 * 2 1 3 5 5 N 1.46907 * 109.47145 * 175.00050 * 4 2 1 6 6 C 1.48556 * 110.99982 * 285.41887 * 5 4 2 7 7 C 1.54381 * 104.59449 * 200.95770 * 6 5 4 8 8 C 1.54263 * 105.05971 * 23.85603 * 7 6 5 9 9 C 1.48561 * 110.99708 * 170.00147 * 5 4 2 10 10 H 1.08997 * 110.51419 * 40.21454 * 9 5 4 11 11 C 1.50706 * 110.41344 * 277.81729 * 9 5 4 12 12 O 1.21290 * 119.99685 * 338.12786 * 11 9 5 13 13 N 1.34772 * 119.99885 * 158.11976 * 11 9 5 14 14 C 1.46497 * 120.00375 * 355.19699 * 13 11 9 15 15 C 1.46502 * 119.99812 * 175.18820 * 13 11 9 16 16 C 1.50697 * 109.46858 * 90.00165 * 15 13 11 17 17 H 1.07995 * 120.00536 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99649 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47455 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47176 * 300.00221 * 20 18 16 23 23 H 1.48506 * 109.47370 * 60.00203 * 20 18 16 24 24 H 1.08998 * 109.47815 * 300.00086 * 1 2 3 25 25 H 1.09004 * 109.47305 * 60.00348 * 1 2 3 26 26 H 1.08998 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47543 * 240.00388 * 2 1 3 28 28 H 1.08997 * 109.47700 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47238 * 300.00043 * 3 2 1 30 30 H 1.09003 * 109.47214 * 59.99497 * 3 2 1 31 31 H 1.08996 * 109.47116 * 55.00261 * 4 2 1 32 32 H 1.09001 * 109.47593 * 294.99971 * 4 2 1 33 33 H 1.08998 * 110.40961 * 82.18570 * 6 5 4 34 34 H 1.08995 * 110.51795 * 319.79094 * 6 5 4 35 35 H 1.09000 * 110.32368 * 264.96352 * 7 6 5 36 36 H 1.08999 * 110.40983 * 142.79593 * 7 6 5 37 37 H 1.08997 * 110.32154 * 241.10249 * 8 7 6 38 38 H 1.08995 * 110.41064 * 118.93769 * 8 7 6 39 39 H 1.09004 * 109.46554 * 274.83402 * 14 13 11 40 40 H 1.08999 * 109.47148 * 34.83100 * 14 13 11 41 41 H 1.08990 * 109.47486 * 154.83423 * 14 13 11 42 42 H 1.09000 * 109.47234 * 330.00394 * 15 13 11 43 43 H 1.09000 * 109.47159 * 210.00432 * 15 13 11 44 44 H 0.96995 * 119.99907 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8266 1.1904 6 6 3.9243 -1.8627 0.2123 7 6 5.3611 -2.2368 0.6352 8 6 5.4478 -1.8679 2.1305 9 6 4.0559 -1.3018 2.4852 10 1 3.4236 -2.0835 2.9061 11 6 4.1865 -0.1545 3.4537 12 8 4.2469 0.9841 3.0404 13 7 4.2360 -0.3939 4.7791 14 6 4.0574 -1.7573 5.2845 15 6 4.4685 0.7094 5.7145 16 6 3.1472 1.3053 6.1268 17 1 2.2263 0.9023 5.7320 18 6 3.1140 2.3645 7.0090 19 7 4.2353 2.8550 7.4901 20 14 1.4761 3.1027 7.5206 21 1 1.7118 4.2212 8.4686 22 1 0.7666 3.6133 6.3201 23 1 0.6478 2.0610 8.1794 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6053 -1.7197 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9196 -1.4552 -0.7987 34 1 3.2712 -2.7331 0.2734 35 1 6.0869 -1.6613 0.0606 36 1 5.5318 -3.3046 0.4982 37 1 6.2160 -1.1113 2.2898 38 1 5.6599 -2.7538 2.7290 39 1 2.9935 -1.9673 5.3947 40 1 4.4967 -2.4656 4.5822 41 1 4.5488 -1.8532 6.2526 42 1 5.0767 1.4738 5.2308 43 1 4.9891 0.3349 6.5959 44 1 5.0858 2.4714 7.2247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335756188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:28 Heat of formation + Delta-G solvation = -65.072486 kcal Electronic energy + Delta-G solvation = -21940.962992 eV Core-core repulsion = 18891.844741 eV Total energy + Delta-G solvation = -3049.118251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31901 -39.25716 -36.70827 -36.61091 -34.95586 -32.18184 -30.92947 -29.00513 -27.99751 -27.28514 -26.39573 -25.25113 -22.82553 -22.26532 -20.62459 -20.06879 -19.11432 -18.16466 -17.38133 -16.95077 -16.16701 -15.83301 -15.79483 -15.51421 -15.26404 -14.67381 -14.62498 -14.20013 -14.01777 -13.77554 -13.74629 -13.57335 -13.31961 -13.16146 -12.90661 -12.81018 -12.69009 -12.52152 -12.41349 -12.12800 -11.98581 -11.85050 -11.71052 -11.51357 -11.46005 -11.22624 -10.64650 -10.58622 -9.47538 -9.37628 -8.71925 -6.47568 1.44895 1.54549 1.73306 1.75652 2.17620 2.50342 3.01358 3.06893 3.49171 3.62154 3.82887 3.90520 4.03558 4.07713 4.20805 4.24413 4.31332 4.50804 4.52219 4.56005 4.63172 4.67656 4.69452 4.77851 4.78404 4.81891 4.88551 4.89783 4.98847 5.01548 5.06480 5.11942 5.20841 5.25115 5.41614 5.49618 5.54268 5.79470 5.81470 6.07408 6.11997 6.42328 6.69427 7.27889 7.45463 8.62450 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.006178 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.057281 B = 4530.928022 C = 5617.305514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.132 4.132 4 C 0.054 3.946 5 N -0.511 5.511 6 C 0.034 3.966 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.054 3.946 10 H 0.088 0.912 11 C 0.504 3.496 12 O -0.576 6.576 13 N -0.612 5.612 14 C 0.082 3.918 15 C 0.249 3.751 16 C -0.615 4.615 17 H 0.039 0.961 18 C -0.032 4.032 19 N -0.930 5.930 20 Si 1.117 2.883 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.260 1.260 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.073 0.927 42 H -0.012 1.012 43 H 0.021 0.979 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -16.465 -15.004 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.074 4.074 5 N -0.235 5.235 6 C -0.093 4.093 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.058 4.058 10 H 0.106 0.894 11 C 0.292 3.708 12 O -0.454 6.454 13 N -0.345 5.345 14 C -0.060 4.060 15 C 0.127 3.873 16 C -0.653 4.653 17 H 0.058 0.942 18 C -0.230 4.230 19 N -0.567 5.567 20 Si 0.937 3.063 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.006 0.994 43 H 0.038 0.962 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.676 -14.185 -14.409 20.551 hybrid contribution 0.646 -1.199 -0.153 1.371 sum -3.030 -15.384 -14.561 21.398 Atomic orbital electron populations 1.21803 0.93954 1.02463 1.01867 1.21008 0.95929 0.95729 0.97148 1.21630 1.00959 0.96352 0.99963 1.22321 0.87318 0.99311 0.98494 1.64998 1.10524 1.44305 1.03715 1.23258 0.96352 0.92969 0.96752 1.22291 0.96309 1.02924 0.93497 1.22254 0.92738 1.00854 0.98836 1.22618 0.99715 0.92867 0.90589 0.89447 1.21136 0.76131 0.90774 0.82771 1.90631 1.50701 1.25609 1.78489 1.48037 1.70624 1.09819 1.05973 1.21908 1.01765 0.81295 1.01046 1.18853 0.95824 0.85393 0.87214 1.22502 0.93237 1.19755 1.29811 0.94220 1.27356 1.07022 0.94727 0.93859 1.70924 0.98423 1.42777 1.44567 0.82958 0.70333 0.76496 0.76494 1.20062 1.20898 1.18470 0.94267 0.91115 0.91215 0.89415 0.93631 0.91792 0.96123 0.92554 0.95030 0.89141 0.91679 0.91141 0.87735 0.93344 0.87683 0.92868 0.88421 0.90800 0.99364 0.96153 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 2 C -0.08 -1.96 2.97 -10.80 -0.03 -1.99 16 3 C -0.13 -4.04 9.08 71.98 0.65 -3.38 16 4 C 0.05 1.54 4.17 86.30 0.36 1.90 16 5 N -0.51 -15.12 4.10 -861.02 -3.53 -18.65 16 6 C 0.03 0.66 5.90 86.45 0.51 1.17 16 7 C -0.11 -1.97 7.00 31.49 0.22 -1.75 16 8 C -0.11 -2.55 6.25 31.49 0.20 -2.36 16 9 C 0.05 1.65 1.71 44.32 0.08 1.72 16 10 H 0.09 2.27 6.75 -2.39 -0.02 2.25 16 11 C 0.50 22.45 6.40 87.66 0.56 23.01 16 12 O -0.58 -32.31 16.26 -3.06 -0.05 -32.35 16 13 N -0.61 -27.37 2.86 -851.14 -2.43 -29.80 16 14 C 0.08 2.56 9.89 127.77 1.26 3.83 16 15 C 0.25 13.94 4.48 85.63 0.38 14.32 16 16 C -0.61 -37.33 9.39 25.60 0.24 -37.09 16 17 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 18 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 19 N -0.93 -59.46 13.65 21.45 0.29 -59.16 16 20 Si 1.12 53.03 29.90 68.60 2.05 55.08 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.79 7.28 -2.39 -0.02 1.78 16 28 H 0.04 1.60 7.75 -2.39 -0.02 1.58 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 32 H 0.03 1.18 7.78 -2.39 -0.02 1.16 16 33 H 0.09 1.63 7.73 -2.39 -0.02 1.61 16 34 H 0.07 1.00 7.75 -2.39 -0.02 0.98 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.42 7.85 -2.39 -0.02 1.40 16 38 H 0.10 1.79 7.61 -2.39 -0.02 1.77 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 40 H 0.10 2.18 5.94 -2.39 -0.01 2.16 16 41 H 0.07 2.23 7.84 -2.39 -0.02 2.21 16 42 H -0.01 -0.74 7.36 -2.39 -0.02 -0.76 16 43 H 0.02 1.13 7.73 -2.39 -0.02 1.11 16 44 H 0.25 16.46 7.22 -92.71 -0.67 15.79 16 Total: -1.00 -80.74 347.29 2.93 -77.81 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.04 Total: 11.45 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.56 Total: -4.36 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -5.67 Total: -107.62 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.05 Total: -32.35 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 2.05 Total: 55.08 kcal Total: -80.74 2.93 -77.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335756188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.734 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds