Wall clock time and date at job start Mon Mar 30 2020 00:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46897 * 109.47346 * 65.00011 * 4 2 1 6 6 C 1.47442 * 111.00324 * 69.86971 * 5 4 2 7 7 C 1.54319 * 107.23415 * 123.25910 * 6 5 4 8 8 C 1.55138 * 103.01486 * 22.28513 * 7 6 5 9 9 C 1.47838 * 111.00281 * 190.71711 * 5 4 2 10 10 H 1.09004 * 110.37216 * 332.46313 * 9 5 4 11 11 C 1.50697 * 110.37590 * 94.80134 * 9 5 4 12 12 O 1.21284 * 120.00122 * 0.02562 * 11 9 5 13 13 N 1.34780 * 120.00124 * 180.02562 * 11 9 5 14 14 C 1.46499 * 119.99882 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46948 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47190 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99999 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00375 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47093 * 89.99537 * 20 18 16 22 22 H 1.48500 * 109.46860 * 209.99608 * 20 18 16 23 23 H 1.48499 * 109.46893 * 329.99548 * 20 18 16 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 1.09004 * 109.46579 * 184.99387 * 4 2 1 32 32 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 33 33 H 1.09003 * 109.89047 * 242.66776 * 6 5 4 34 34 H 1.09004 * 109.88900 * 3.85519 * 6 5 4 35 35 H 1.08996 * 110.70445 * 140.66851 * 7 6 5 36 36 H 1.08993 * 110.70301 * 263.72903 * 7 6 5 37 37 H 1.09002 * 110.99057 * 82.44079 * 8 7 6 38 38 H 1.09001 * 110.98702 * 206.21330 * 8 7 6 39 39 H 0.97001 * 119.99791 * 359.97438 * 13 11 9 40 40 H 1.08993 * 109.47473 * 299.99791 * 14 13 11 41 41 H 1.09002 * 109.47268 * 60.00631 * 14 13 11 42 42 H 1.08997 * 109.47492 * 300.00345 * 15 14 13 43 43 H 1.09006 * 109.46938 * 60.00246 * 15 14 13 44 44 H 0.97001 * 120.00713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6512 -2.1367 1.1905 6 6 2.4040 -2.8483 0.1412 7 6 3.1296 -4.0290 0.8201 8 6 2.2961 -4.2571 2.1085 9 6 1.8979 -2.8081 2.4843 10 1 2.7120 -2.3171 3.0175 11 6 0.6455 -2.8088 3.3223 12 8 -0.3699 -2.3008 2.8958 13 7 0.6536 -3.3739 4.5459 14 6 -0.5642 -3.3751 5.3603 15 6 -0.2860 -4.0738 6.6927 16 6 -1.5384 -4.0744 7.5307 17 1 -2.4425 -3.6221 7.1509 18 6 -1.5304 -4.6534 8.7821 19 7 -2.6232 -4.6535 9.5137 20 14 0.0333 -5.4364 9.4389 21 1 0.8240 -4.4191 10.1771 22 1 -0.3184 -6.5507 10.3553 23 1 0.8372 -5.9619 8.3062 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1262 -0.6445 1.2952 32 1 1.6053 -0.2618 2.1370 33 1 1.7177 -3.2222 -0.6186 34 1 3.1328 -2.1766 -0.3125 35 1 3.1053 -4.9135 0.1836 36 1 4.1571 -3.7603 1.0651 37 1 1.4142 -4.8631 1.9007 38 1 2.9037 -4.7113 2.8912 39 1 1.4655 -3.7806 4.8869 40 1 -0.8775 -2.3479 5.5468 41 1 -1.3552 -3.9058 4.8304 42 1 0.0272 -5.1010 6.5059 43 1 0.5052 -3.5435 7.2228 44 1 -2.6175 -5.0605 10.3941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337223943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:31 Heat of formation + Delta-G solvation = -52.650696 kcal Electronic energy + Delta-G solvation = -20978.217207 eV Core-core repulsion = 17929.637606 eV Total energy + Delta-G solvation = -3048.579602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12408 -38.13885 -35.71785 -34.85057 -32.77256 -31.24587 -30.57217 -29.08863 -27.09841 -25.59358 -24.90142 -22.27009 -21.70368 -20.73497 -19.65854 -19.53239 -17.21885 -16.83490 -16.52934 -15.29730 -15.06052 -14.87468 -14.63100 -14.19264 -14.13083 -13.66808 -13.37590 -13.13653 -13.03480 -12.85207 -12.58405 -12.31022 -11.97617 -11.76247 -11.68818 -11.47629 -11.37464 -11.17365 -10.98831 -10.91061 -10.78288 -10.60938 -10.35879 -10.20861 -9.95194 -9.41061 -9.22505 -8.62373 -8.44692 -8.33200 -6.10113 -4.10030 3.05013 3.25341 3.32784 3.34046 3.35038 4.05057 4.38263 4.39910 4.46988 4.69673 4.77314 4.87730 5.02047 5.10454 5.13641 5.22783 5.25826 5.35455 5.48487 5.53742 5.54965 5.61013 5.64732 5.72313 5.79090 5.89015 5.92929 6.00532 6.07288 6.15610 6.24774 6.29141 6.55279 6.59297 6.79145 6.83863 6.96786 7.18692 7.25704 7.68523 8.01801 8.45634 8.72421 8.94757 9.50076 11.03025 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.003763 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.840242 B = 7439.925952 C = 8050.497440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.059 3.941 5 N -0.502 5.502 6 C 0.044 3.956 7 C -0.141 4.141 8 C -0.118 4.118 9 C 0.053 3.947 10 H 0.076 0.924 11 C 0.513 3.487 12 O -0.521 6.521 13 N -0.731 5.731 14 C 0.133 3.867 15 C -0.021 4.021 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.393 0.607 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.021 0.979 43 H 0.016 0.984 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.577 4.890 -19.121 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.069 4.069 5 N -0.226 5.226 6 C -0.084 4.084 7 C -0.179 4.179 8 C -0.157 4.157 9 C -0.059 4.059 10 H 0.093 0.907 11 C 0.297 3.703 12 O -0.396 6.396 13 N -0.382 5.382 14 C 0.011 3.989 15 C -0.059 4.059 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.226 0.774 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.190 5.213 -19.371 24.571 hybrid contribution 2.017 -0.564 0.960 2.304 sum 16.207 4.649 -18.411 24.964 Atomic orbital electron populations 1.21683 0.93972 1.03141 1.00506 1.21079 0.97341 0.95068 0.97251 1.21835 1.00425 0.96271 1.01992 1.22360 0.96966 0.88204 0.99389 1.63049 1.55343 1.01713 1.02520 1.22875 0.95760 0.94833 0.94943 1.22787 0.98904 0.99178 0.97060 1.22671 1.00620 0.94642 0.97747 1.22508 0.95469 0.96097 0.91814 0.90668 1.20235 0.89762 0.78796 0.81516 1.90679 1.33561 1.44247 1.71118 1.46310 1.15445 1.59411 1.17052 1.21450 0.84936 1.01063 0.91500 1.19786 0.98415 0.95624 0.92092 1.20936 0.96556 1.38213 1.00357 0.90633 1.25005 0.96177 0.95505 0.96622 1.69903 1.27520 1.45010 1.11303 0.86750 0.83905 0.79352 0.79057 1.20257 1.21287 1.19080 0.92951 0.93975 0.91018 0.91568 0.93132 0.92550 0.92556 0.95075 0.90681 0.90341 0.92541 0.90410 0.91357 0.89875 0.90011 0.77440 0.92167 0.92081 0.96051 0.96545 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.08 37.16 0.34 -1.27 16 2 C -0.09 -0.89 2.89 -90.62 -0.26 -1.15 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C 0.06 0.65 3.93 -3.82 -0.02 0.64 16 5 N -0.50 -6.08 3.79 -224.76 -0.85 -6.93 16 6 C 0.04 0.41 6.13 -2.84 -0.02 0.39 16 7 C -0.14 -1.13 6.94 -24.91 -0.17 -1.31 16 8 C -0.12 -1.18 6.47 -24.60 -0.16 -1.34 16 9 C 0.05 0.65 2.80 -67.35 -0.19 0.46 16 10 H 0.08 0.81 7.81 -51.93 -0.41 0.41 16 11 C 0.51 8.50 7.19 -10.99 -0.08 8.42 16 12 O -0.52 -10.78 16.49 5.55 0.09 -10.69 16 13 N -0.73 -12.08 5.54 -60.30 -0.33 -12.42 16 14 C 0.13 2.75 5.61 -4.04 -0.02 2.72 16 15 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 16 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 17 H 0.08 2.31 7.99 -52.49 -0.42 1.90 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 20 Si 0.88 21.05 27.47 -169.99 -4.67 16.39 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 27 H 0.07 0.63 7.05 -51.93 -0.37 0.26 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.03 0.30 7.96 -51.93 -0.41 -0.11 16 32 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.46 6.94 -51.93 -0.36 0.10 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.39 5.39 8.47 -40.82 -0.35 5.04 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 43 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -32.25 350.25 -8.63 -40.88 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.13 Total: 1.33 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.78 Total: -7.12 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.41 Total: -46.06 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.25 -8.63 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337223943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.772 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds