Wall clock time and date at job start Mon Mar 30 2020 00:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 5 5 N 1.46897 * 109.47346 * 65.00011 * 4 2 1 6 6 C 1.47442 * 111.00324 * 69.86971 * 5 4 2 7 7 C 1.54319 * 107.23415 * 123.25910 * 6 5 4 8 8 C 1.55138 * 103.01486 * 22.28513 * 7 6 5 9 9 C 1.47838 * 111.00281 * 190.71711 * 5 4 2 10 10 H 1.09004 * 110.37216 * 332.46313 * 9 5 4 11 11 C 1.50697 * 110.37590 * 94.80134 * 9 5 4 12 12 O 1.21284 * 120.00122 * 0.02562 * 11 9 5 13 13 N 1.34780 * 120.00124 * 180.02562 * 11 9 5 14 14 C 1.46499 * 119.99882 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.46948 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47190 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99999 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00375 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47093 * 89.99537 * 20 18 16 22 22 H 1.48500 * 109.46860 * 209.99608 * 20 18 16 23 23 H 1.48499 * 109.46893 * 329.99548 * 20 18 16 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47160 * 239.99666 * 2 1 3 28 28 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 31 31 H 1.09004 * 109.46579 * 184.99387 * 4 2 1 32 32 H 1.08992 * 109.47046 * 304.99570 * 4 2 1 33 33 H 1.09003 * 109.89047 * 242.66776 * 6 5 4 34 34 H 1.09004 * 109.88900 * 3.85519 * 6 5 4 35 35 H 1.08996 * 110.70445 * 140.66851 * 7 6 5 36 36 H 1.08993 * 110.70301 * 263.72903 * 7 6 5 37 37 H 1.09002 * 110.99057 * 82.44079 * 8 7 6 38 38 H 1.09001 * 110.98702 * 206.21330 * 8 7 6 39 39 H 0.97001 * 119.99791 * 359.97438 * 13 11 9 40 40 H 1.08993 * 109.47473 * 299.99791 * 14 13 11 41 41 H 1.09002 * 109.47268 * 60.00631 * 14 13 11 42 42 H 1.08997 * 109.47492 * 300.00345 * 15 14 13 43 43 H 1.09006 * 109.46938 * 60.00246 * 15 14 13 44 44 H 0.97001 * 120.00713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6512 -2.1367 1.1905 6 6 2.4040 -2.8483 0.1412 7 6 3.1296 -4.0290 0.8201 8 6 2.2961 -4.2571 2.1085 9 6 1.8979 -2.8081 2.4843 10 1 2.7120 -2.3171 3.0175 11 6 0.6455 -2.8088 3.3223 12 8 -0.3699 -2.3008 2.8958 13 7 0.6536 -3.3739 4.5459 14 6 -0.5642 -3.3751 5.3603 15 6 -0.2860 -4.0738 6.6927 16 6 -1.5384 -4.0744 7.5307 17 1 -2.4425 -3.6221 7.1509 18 6 -1.5304 -4.6534 8.7821 19 7 -2.6232 -4.6535 9.5137 20 14 0.0333 -5.4364 9.4389 21 1 0.8240 -4.4191 10.1771 22 1 -0.3184 -6.5507 10.3553 23 1 0.8372 -5.9619 8.3062 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1262 -0.6445 1.2952 32 1 1.6053 -0.2618 2.1370 33 1 1.7177 -3.2222 -0.6186 34 1 3.1328 -2.1766 -0.3125 35 1 3.1053 -4.9135 0.1836 36 1 4.1571 -3.7603 1.0651 37 1 1.4142 -4.8631 1.9007 38 1 2.9037 -4.7113 2.8912 39 1 1.4655 -3.7806 4.8869 40 1 -0.8775 -2.3479 5.5468 41 1 -1.3552 -3.9058 4.8304 42 1 0.0272 -5.1010 6.5059 43 1 0.5052 -3.5435 7.2228 44 1 -2.6175 -5.0605 10.3941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337223943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:30 Heat of formation + Delta-G solvation = -75.096275 kcal Electronic energy + Delta-G solvation = -20979.190521 eV Core-core repulsion = 17929.637606 eV Total energy + Delta-G solvation = -3049.552915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20723 -39.30610 -36.56459 -36.51434 -34.76843 -32.34458 -31.92003 -30.26338 -27.94838 -26.83607 -26.29178 -23.51532 -22.56768 -22.37200 -20.88089 -20.38250 -18.99948 -18.27903 -17.44665 -16.59946 -16.40617 -16.21668 -15.87672 -15.65979 -15.16594 -14.94386 -14.67018 -14.34689 -14.15501 -13.92024 -13.78523 -13.34173 -13.13814 -13.06862 -12.76969 -12.69024 -12.51631 -12.15950 -12.14349 -12.07657 -11.80870 -11.75674 -11.64068 -11.57817 -11.51792 -11.43815 -10.79089 -10.66889 -9.99026 -9.19145 -8.30285 -6.37939 1.38924 1.42066 1.53444 1.74829 2.16508 2.37005 3.04686 3.07448 3.57192 3.66735 3.92846 3.98244 4.08025 4.13894 4.23220 4.30425 4.39232 4.42491 4.56046 4.57667 4.70096 4.74663 4.77264 4.83339 4.85006 4.94388 4.98247 5.06101 5.10105 5.12523 5.17288 5.26267 5.33713 5.40599 5.45004 5.46207 5.54800 5.66607 5.95756 6.17928 6.22158 6.67226 6.75756 7.26602 7.41220 8.86748 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.003763 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.840242 B = 7439.925952 C = 8050.497440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 C -0.143 4.143 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.042 3.958 7 C -0.130 4.130 8 C -0.117 4.117 9 C 0.060 3.940 10 H 0.099 0.901 11 C 0.509 3.491 12 O -0.571 6.571 13 N -0.719 5.719 14 C 0.148 3.852 15 C -0.010 4.010 16 C -0.541 4.541 17 H 0.026 0.974 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.235 1.235 24 H 0.030 0.970 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.412 0.588 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.031 4.064 -20.132 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.067 4.067 5 N -0.255 5.255 6 C -0.085 4.085 7 C -0.168 4.168 8 C -0.155 4.155 9 C -0.052 4.052 10 H 0.116 0.884 11 C 0.295 3.705 12 O -0.449 6.449 13 N -0.372 5.372 14 C 0.024 3.976 15 C -0.048 4.048 16 C -0.580 4.580 17 H 0.044 0.956 18 C -0.194 4.194 19 N -0.592 5.592 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.158 1.158 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.124 0.876 39 H 0.248 0.752 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.686 4.384 -20.411 28.017 hybrid contribution 0.470 -0.243 1.225 1.334 sum 19.156 4.141 -19.186 27.426 Atomic orbital electron populations 1.21615 0.95886 1.01199 1.00122 1.21072 0.95583 0.96295 0.97381 1.21797 1.01391 0.94919 1.01977 1.22330 0.97994 0.87719 0.98613 1.62911 1.57067 1.02410 1.03079 1.22914 0.95865 0.95581 0.94101 1.22769 0.99233 0.98985 0.95797 1.22712 1.00566 0.92569 0.99641 1.22472 0.92998 0.98227 0.91503 0.88366 1.21197 0.90870 0.77120 0.81280 1.90661 1.35923 1.46225 1.72087 1.46053 1.14662 1.59616 1.16857 1.20943 0.86307 0.99147 0.91201 1.19632 0.96215 0.96910 0.92056 1.21273 0.97152 1.37953 1.01572 0.95604 1.26118 1.00544 0.96016 0.96727 1.70080 1.30638 1.46457 1.12009 0.85510 0.78770 0.78312 0.79107 1.18947 1.21233 1.15760 0.95091 0.92534 0.93673 0.90300 0.91503 0.91697 0.93496 0.92840 0.93387 0.91179 0.90779 0.89127 0.89295 0.91888 0.87605 0.75212 0.94368 0.94326 0.94374 0.94620 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.08 71.98 0.65 -2.52 16 2 C -0.08 -1.59 2.89 -10.79 -0.03 -1.63 16 3 C -0.14 -2.17 9.19 71.98 0.66 -1.50 16 4 C 0.06 1.28 3.93 86.31 0.34 1.62 16 5 N -0.53 -12.14 3.79 -865.01 -3.28 -15.42 16 6 C 0.04 0.68 6.13 86.65 0.53 1.21 16 7 C -0.13 -1.58 6.94 31.77 0.22 -1.36 16 8 C -0.12 -1.96 6.47 31.98 0.21 -1.76 16 9 C 0.06 1.35 2.80 44.64 0.12 1.47 16 10 H 0.10 1.79 7.81 -2.38 -0.02 1.77 16 11 C 0.51 16.79 7.19 87.66 0.63 17.42 16 12 O -0.57 -24.63 16.49 -3.04 -0.05 -24.68 16 13 N -0.72 -23.09 5.54 -463.06 -2.56 -25.66 16 14 C 0.15 6.25 5.61 86.38 0.48 6.74 16 15 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 16 C -0.54 -31.39 9.66 25.60 0.25 -31.14 16 17 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 18 C 0.00 0.17 5.47 84.66 0.46 0.63 16 19 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 20 Si 0.96 42.32 27.47 68.60 1.88 44.20 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.23 -9.10 6.54 99.48 0.65 -8.45 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.32 7.75 -2.39 -0.02 1.30 16 27 H 0.08 1.31 7.05 -2.39 -0.02 1.29 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.87 7.96 -2.39 -0.02 0.85 16 32 H 0.05 1.25 8.07 -2.39 -0.02 1.23 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 0.93 6.94 -2.39 -0.02 0.92 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.41 10.11 8.47 -92.71 -0.79 9.32 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.60 7.20 -2.39 -0.02 1.59 16 43 H 0.04 1.48 7.57 -2.38 -0.02 1.47 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -74.50 350.25 1.06 -73.45 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.11 Total: 18.90 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.66 Total: -11.16 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -5.54 Total: -100.70 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Total: -74.50 1.06 -73.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337223943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.650 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds