Wall clock time and date at job start Mon Mar 30 2020 01:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 5 5 N 1.46499 * 109.46708 * 299.99298 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 H 1.08998 * 109.47795 * 39.99930 * 8 6 5 10 10 N 1.46899 * 109.46885 * 160.00203 * 8 6 5 11 11 C 1.53001 * 109.46917 * 279.99599 * 8 6 5 12 12 C 1.52998 * 109.47003 * 175.00627 * 11 8 6 13 13 C 1.50703 * 109.47038 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00291 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00040 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46771 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47348 * 119.99983 * 17 15 13 20 20 H 1.48505 * 109.47061 * 240.00306 * 17 15 13 21 21 C 1.53000 * 109.46708 * 239.99916 * 2 1 3 22 22 C 1.52999 * 117.49819 * 128.75094 * 21 2 1 23 23 C 1.53002 * 117.50153 * 60.08930 * 21 2 1 24 24 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 25 25 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 26 26 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 29 29 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 30 30 H 1.08998 * 109.46692 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47584 * 59.99664 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 1.00896 * 111.00735 * 59.99680 * 10 8 6 34 34 H 1.00898 * 111.00225 * 183.95319 * 10 8 6 35 35 H 1.09004 * 109.47248 * 295.00243 * 11 8 6 36 36 H 1.09003 * 109.47165 * 55.00053 * 11 8 6 37 37 H 1.08999 * 109.46903 * 299.99449 * 12 11 8 38 38 H 1.08990 * 109.47625 * 60.00034 * 12 11 8 39 39 H 0.96996 * 120.00040 * 179.97438 * 16 15 13 40 40 H 1.09003 * 115.54739 * 274.41841 * 21 2 1 41 41 H 1.09006 * 117.49952 * 359.97438 * 22 21 2 42 42 H 1.08999 * 117.49901 * 145.01539 * 22 21 2 43 43 H 1.08990 * 117.50052 * 214.97522 * 23 21 2 44 44 H 1.08998 * 117.49735 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8777 -0.4909 3.6695 7 8 2.5756 -1.4766 3.7807 8 6 1.3804 0.2231 4.8999 9 1 0.3499 0.5419 4.7436 10 7 1.4424 -0.6859 6.0522 11 6 2.2578 1.4475 5.1686 12 6 1.6801 2.2413 6.3420 13 6 2.5439 3.4476 6.6062 14 1 3.4178 3.6296 5.9983 15 6 2.2186 4.3189 7.6240 16 7 1.1546 4.0970 8.3647 17 14 3.2897 5.8138 7.9519 18 1 4.4181 5.8354 6.9869 19 1 2.4793 7.0479 7.7929 20 1 3.8229 5.7466 9.3364 21 6 2.0399 -0.7213 -1.2493 22 6 3.0763 0.0038 -2.1101 23 6 1.6373 -0.1484 -2.6097 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7218 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 0.9938 0.7579 2.3564 33 1 2.3882 -0.9958 6.2180 34 1 1.0544 -0.2521 6.8764 35 1 3.2695 1.1231 5.4124 36 1 2.2828 2.0785 4.2801 37 1 0.6685 2.5657 6.0981 38 1 1.6551 1.6103 7.2303 39 1 0.9260 4.7098 9.0810 40 1 2.1252 -1.8047 -1.1647 41 1 3.3945 0.9950 -1.7867 42 1 3.8431 -0.6025 -2.5922 43 1 1.4582 -0.8547 -3.4201 44 1 1.0096 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342945797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:10 Heat of formation + Delta-G solvation = -40.144187 kcal Electronic energy + Delta-G solvation = -20824.914325 eV Core-core repulsion = 17776.877046 eV Total energy + Delta-G solvation = -3048.037279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04710 -38.86400 -35.63588 -35.05260 -32.84405 -32.24558 -29.87348 -27.63395 -27.51619 -25.93133 -24.01201 -22.56721 -22.44397 -20.63473 -19.84933 -18.61704 -17.44184 -16.31339 -16.14856 -15.89104 -15.21477 -14.72022 -14.65975 -14.43485 -13.97555 -13.80026 -13.62771 -13.04282 -13.00877 -12.76194 -12.49391 -12.17371 -11.97720 -11.78729 -11.62051 -11.27460 -11.24279 -11.08064 -10.93033 -10.89148 -10.66434 -10.48786 -10.15668 -9.98760 -9.88554 -9.26792 -9.17824 -8.89303 -8.44554 -8.16067 -6.08922 -4.11946 3.00234 3.25759 3.30623 3.33882 3.37852 3.56387 4.34218 4.39250 4.46359 4.61020 4.77602 4.91296 4.94098 5.09488 5.22074 5.22394 5.27531 5.37341 5.43651 5.57060 5.57980 5.60274 5.61352 5.75375 5.76305 5.79842 5.84241 5.87758 5.99009 6.09408 6.14396 6.29956 6.53160 6.60257 6.88345 7.46297 7.52683 7.62132 7.75512 7.88451 7.93229 8.31149 8.53206 8.94352 9.53045 11.02009 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.003760 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.731356 B = 7445.344286 C = 8221.563822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.149 4.149 4 C 0.135 3.865 5 N -0.732 5.732 6 C 0.524 3.476 7 O -0.540 6.540 8 C 0.074 3.926 9 H 0.095 0.905 10 N -0.831 5.831 11 C -0.137 4.137 12 C 0.024 3.976 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.141 4.141 22 C -0.184 4.184 23 C -0.177 4.177 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.345 0.655 34 H 0.354 0.646 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 -7.144 -19.421 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.206 4.206 4 C 0.011 3.989 5 N -0.387 5.387 6 C 0.311 3.689 7 O -0.416 6.416 8 C -0.041 4.041 9 H 0.113 0.887 10 N -0.363 5.363 11 C -0.176 4.176 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.159 4.159 22 C -0.221 4.221 23 C -0.214 4.214 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.290 -8.280 -19.609 21.325 hybrid contribution 0.895 2.013 0.574 2.277 sum -0.395 -6.267 -19.036 20.045 Atomic orbital electron populations 1.21866 0.93746 1.02281 1.01917 1.20288 0.95993 0.95432 0.92800 1.22039 1.01610 0.94824 1.02092 1.21258 0.99115 0.95699 0.82845 1.46051 1.54722 1.32443 1.05440 1.20873 0.79559 0.83936 0.84519 1.90629 1.37763 1.26385 1.86848 1.21469 1.00965 0.92060 0.89587 0.88714 1.58738 1.27784 1.42026 1.07733 1.22372 0.98628 0.94957 1.01690 1.19107 0.96316 0.94316 0.91595 1.21225 1.10807 1.08249 1.15827 0.92673 1.25018 0.95243 0.98115 0.95975 1.69962 1.25578 1.37433 1.20233 0.86533 0.80546 0.82759 0.78164 1.19757 1.20950 1.20941 1.22205 1.03898 0.99015 0.90800 1.23176 0.92421 1.02688 1.03790 1.22936 0.98264 1.03225 0.96926 0.92317 0.92281 0.92299 0.91868 0.92282 0.92060 0.91619 0.91713 0.76462 0.84155 0.83117 0.92706 0.92603 0.96342 0.96387 0.92943 0.87671 0.87988 0.89070 0.89016 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.14 37.16 0.30 -0.86 16 2 C -0.04 -0.39 0.64 -154.51 -0.10 -0.49 16 3 C -0.15 -1.30 6.90 37.16 0.26 -1.05 16 4 C 0.13 1.56 4.55 -4.04 -0.02 1.54 16 5 N -0.73 -9.52 4.96 -60.30 -0.30 -9.82 16 6 C 0.52 8.82 7.08 -10.98 -0.08 8.74 16 7 O -0.54 -10.80 16.25 5.56 0.09 -10.71 16 8 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 9 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 10 N -0.83 -14.59 8.94 -5.66 -0.05 -14.64 16 11 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 12 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 13 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.14 -1.13 5.14 -90.62 -0.47 -1.60 16 22 C -0.18 -1.39 9.57 -26.69 -0.26 -1.64 16 23 C -0.18 -1.24 9.39 -26.69 -0.25 -1.50 16 24 H 0.06 0.49 6.86 -51.93 -0.36 0.14 16 25 H 0.06 0.44 7.29 -51.93 -0.38 0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.58 6.97 -51.93 -0.36 0.22 16 28 H 0.06 0.46 7.07 -51.93 -0.37 0.09 16 29 H 0.06 0.57 6.86 -51.93 -0.36 0.21 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.40 4.50 6.16 -40.82 -0.25 4.25 16 33 H 0.35 6.16 8.58 -39.29 -0.34 5.83 16 34 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 41 H 0.10 0.78 5.85 -51.93 -0.30 0.47 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.64 7.07 -51.93 -0.37 0.28 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -30.94 347.57 -8.31 -39.24 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.50 Total: 11.05 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.50 Total: -11.31 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.39 Total: -49.74 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.94 -8.31 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342945797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.903 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds