Wall clock time and date at job start Mon Mar 30 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 5 5 N 1.46499 * 109.46708 * 299.99298 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 H 1.08998 * 109.47795 * 39.99930 * 8 6 5 10 10 N 1.46899 * 109.46885 * 160.00203 * 8 6 5 11 11 C 1.53001 * 109.46917 * 279.99599 * 8 6 5 12 12 C 1.52998 * 109.47003 * 175.00627 * 11 8 6 13 13 C 1.50703 * 109.47038 * 180.02562 * 12 11 8 14 14 H 1.08000 * 120.00291 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00040 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46771 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47348 * 119.99983 * 17 15 13 20 20 H 1.48505 * 109.47061 * 240.00306 * 17 15 13 21 21 C 1.53000 * 109.46708 * 239.99916 * 2 1 3 22 22 C 1.52999 * 117.49819 * 128.75094 * 21 2 1 23 23 C 1.53002 * 117.50153 * 60.08930 * 21 2 1 24 24 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 25 25 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 26 26 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 29 29 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 30 30 H 1.08998 * 109.46692 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47584 * 59.99664 * 4 2 1 32 32 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 33 33 H 1.00896 * 111.00735 * 59.99680 * 10 8 6 34 34 H 1.00898 * 111.00225 * 183.95319 * 10 8 6 35 35 H 1.09004 * 109.47248 * 295.00243 * 11 8 6 36 36 H 1.09003 * 109.47165 * 55.00053 * 11 8 6 37 37 H 1.08999 * 109.46903 * 299.99449 * 12 11 8 38 38 H 1.08990 * 109.47625 * 60.00034 * 12 11 8 39 39 H 0.96996 * 120.00040 * 179.97438 * 16 15 13 40 40 H 1.09003 * 115.54739 * 274.41841 * 21 2 1 41 41 H 1.09006 * 117.49952 * 359.97438 * 22 21 2 42 42 H 1.08999 * 117.49901 * 145.01539 * 22 21 2 43 43 H 1.08990 * 117.50052 * 214.97522 * 23 21 2 44 44 H 1.08998 * 117.49735 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5517 -0.0307 2.4454 6 6 1.8777 -0.4909 3.6695 7 8 2.5756 -1.4766 3.7807 8 6 1.3804 0.2231 4.8999 9 1 0.3499 0.5419 4.7436 10 7 1.4424 -0.6859 6.0522 11 6 2.2578 1.4475 5.1686 12 6 1.6801 2.2413 6.3420 13 6 2.5439 3.4476 6.6062 14 1 3.4178 3.6296 5.9983 15 6 2.2186 4.3189 7.6240 16 7 1.1546 4.0970 8.3647 17 14 3.2897 5.8138 7.9519 18 1 4.4181 5.8354 6.9869 19 1 2.4793 7.0479 7.7929 20 1 3.8229 5.7466 9.3364 21 6 2.0399 -0.7213 -1.2493 22 6 3.0763 0.0038 -2.1101 23 6 1.6373 -0.1484 -2.6097 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7218 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 0.9938 0.7579 2.3564 33 1 2.3882 -0.9958 6.2180 34 1 1.0544 -0.2521 6.8764 35 1 3.2695 1.1231 5.4124 36 1 2.2828 2.0785 4.2801 37 1 0.6685 2.5657 6.0981 38 1 1.6551 1.6103 7.2303 39 1 0.9260 4.7098 9.0810 40 1 2.1252 -1.8047 -1.1647 41 1 3.3945 0.9950 -1.7867 42 1 3.8431 -0.6025 -2.5922 43 1 1.4582 -0.8547 -3.4201 44 1 1.0096 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342945797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:09 Heat of formation + Delta-G solvation = -60.371280 kcal Electronic energy + Delta-G solvation = -20825.791437 eV Core-core repulsion = 17776.877046 eV Total energy + Delta-G solvation = -3048.914391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16198 -39.81632 -37.11782 -36.14939 -34.83140 -33.18154 -31.68172 -28.78797 -28.30794 -27.34818 -25.53910 -23.57981 -23.02726 -22.23884 -21.19707 -19.44620 -18.83313 -18.13884 -17.21223 -16.86622 -16.50837 -16.29267 -15.87297 -15.66941 -15.24845 -15.06889 -14.67117 -14.40581 -14.36518 -13.96367 -13.49097 -13.44868 -13.25484 -12.95013 -12.78210 -12.66474 -12.49560 -12.41082 -11.97622 -11.89546 -11.81131 -11.72661 -11.57913 -11.28550 -11.13007 -10.80466 -10.68657 -10.56368 -10.07316 -9.64016 -8.21473 -6.31751 1.38745 1.40402 1.52113 1.63300 2.15885 2.40164 2.94541 3.12245 3.62590 3.72009 3.76446 3.86048 3.93450 4.12819 4.16575 4.24621 4.25713 4.28169 4.50019 4.66111 4.71300 4.73003 4.80535 4.85196 4.87234 4.97567 5.03812 5.06746 5.09321 5.11504 5.30740 5.34414 5.41113 5.45900 5.46810 5.47939 5.65892 5.80921 6.07557 6.21492 6.47832 6.54294 6.83925 7.24855 7.37460 8.89477 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021654 B = 0.003760 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.731356 B = 7445.344286 C = 8221.563822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.034 4.034 3 C -0.148 4.148 4 C 0.135 3.865 5 N -0.715 5.715 6 C 0.525 3.475 7 O -0.575 6.575 8 C 0.080 3.920 9 H 0.109 0.891 10 N -0.830 5.830 11 C -0.120 4.120 12 C 0.030 3.970 13 C -0.544 4.544 14 H 0.054 0.946 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.280 1.280 21 C -0.151 4.151 22 C -0.188 4.188 23 C -0.166 4.166 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.411 0.589 33 H 0.343 0.657 34 H 0.352 0.648 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 -6.383 -20.987 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.206 4.206 4 C 0.011 3.989 5 N -0.368 5.368 6 C 0.312 3.688 7 O -0.454 6.454 8 C -0.035 4.035 9 H 0.127 0.873 10 N -0.362 5.362 11 C -0.160 4.160 12 C -0.007 4.007 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.784 3.216 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.170 4.170 22 C -0.225 4.225 23 C -0.203 4.203 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.248 0.752 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.288 -7.504 -21.213 22.538 hybrid contribution 0.874 1.756 1.033 2.217 sum -0.414 -5.748 -20.180 20.987 Atomic orbital electron populations 1.21874 0.93048 1.02369 1.02485 1.20189 0.96415 0.95182 0.91685 1.22046 1.01302 0.94709 1.02504 1.21357 0.98447 0.95763 0.83295 1.45944 1.53722 1.32306 1.04848 1.20724 0.79261 0.83550 0.85309 1.90617 1.39405 1.27950 1.87380 1.21415 1.01139 0.90985 0.89948 0.87311 1.58755 1.27622 1.41930 1.07859 1.22124 0.98063 0.95599 1.00188 1.18971 0.95279 0.93786 0.92693 1.21649 1.11174 1.09416 1.15956 0.92740 1.25866 0.96513 1.01147 0.95805 1.70068 1.27110 1.38672 1.20807 0.85488 0.78926 0.79126 0.78045 1.18996 1.20214 1.20608 1.22171 1.04911 0.98916 0.90969 1.23231 0.92902 1.02624 1.03702 1.22999 0.97742 1.03344 0.96173 0.92506 0.90970 0.92475 0.92410 0.90891 0.92618 0.92802 0.92281 0.75187 0.84372 0.83257 0.93841 0.91559 0.97869 0.97956 0.92733 0.87882 0.88059 0.88674 0.88120 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.14 71.98 0.59 -1.45 16 2 C -0.03 -0.55 0.64 -52.18 -0.03 -0.58 16 3 C -0.15 -2.35 6.90 71.98 0.50 -1.85 16 4 C 0.13 3.01 4.55 86.38 0.39 3.40 16 5 N -0.71 -17.83 4.96 -463.06 -2.30 -20.13 16 6 C 0.53 17.32 7.08 87.65 0.62 17.94 16 7 O -0.57 -22.89 16.25 -3.04 -0.05 -22.94 16 8 C 0.08 2.72 3.21 44.17 0.14 2.86 16 9 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 10 N -0.83 -29.13 8.94 -171.81 -1.54 -30.67 16 11 C -0.12 -4.68 4.78 30.59 0.15 -4.54 16 12 C 0.03 1.46 4.74 29.85 0.14 1.60 16 13 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 14 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 15 C 0.01 0.29 5.46 84.65 0.46 0.75 16 16 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 17 Si 0.96 43.27 29.54 68.60 2.03 45.29 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C -0.15 -2.19 5.14 -10.79 -0.06 -2.25 16 22 C -0.19 -2.51 9.57 30.62 0.29 -2.22 16 23 C -0.17 -1.95 9.39 30.62 0.29 -1.66 16 24 H 0.06 0.84 6.86 -2.38 -0.02 0.82 16 25 H 0.07 0.87 7.29 -2.38 -0.02 0.86 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.98 6.97 -2.39 -0.02 0.97 16 28 H 0.07 0.96 7.07 -2.39 -0.02 0.94 16 29 H 0.05 0.94 6.86 -2.39 -0.02 0.92 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 8.59 6.16 -92.70 -0.57 8.01 16 33 H 0.34 12.34 8.58 -89.70 -0.77 11.57 16 34 H 0.35 12.45 7.55 -89.70 -0.68 11.78 16 35 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 39 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.10 1.55 8.11 -2.39 -0.02 1.53 16 41 H 0.10 1.37 5.85 -2.38 -0.01 1.36 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 1.08 7.07 -2.39 -0.02 1.06 16 Total: -1.00 -65.06 347.57 1.13 -63.93 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -1.02 Total: 36.00 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 3.71 Total: -17.59 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.55 Total: -104.70 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.06 1.13 -63.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342945797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.563 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds