Wall clock time and date at job start Mon Mar 30 2020 00:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 C 1.53004 * 109.47360 * 120.00220 * 2 1 3 5 5 N 1.46900 * 109.47195 * 63.14006 * 4 2 1 6 6 C 1.46845 * 111.00202 * 75.93500 * 5 4 2 7 7 C 1.53036 * 109.51323 * 185.83819 * 6 5 4 8 8 C 1.53119 * 109.27690 * 300.82142 * 7 6 5 9 9 C 1.50697 * 109.52197 * 177.62578 * 8 7 6 10 10 O 1.21294 * 120.00355 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00068 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99675 * 0.02562 * 11 9 8 13 13 C 1.37098 * 120.00288 * 179.97438 * 11 9 8 14 14 H 1.08005 * 119.99613 * 22.55848 * 13 11 9 15 15 C 1.38952 * 120.00362 * 202.55199 * 13 11 9 16 16 N 1.31418 * 119.99505 * 11.24512 * 15 13 11 17 17 Si 1.86791 * 120.00117 * 191.24208 * 15 13 11 18 18 H 1.48500 * 109.47192 * 90.00238 * 17 15 13 19 19 H 1.48505 * 109.47409 * 210.00051 * 17 15 13 20 20 H 1.48496 * 109.47366 * 330.00177 * 17 15 13 21 21 C 1.53113 * 109.15848 * 57.65774 * 8 7 6 22 22 C 1.46820 * 110.98625 * 200.15167 * 5 4 2 23 23 H 1.08992 * 109.47310 * 64.33481 * 1 2 3 24 24 H 1.09012 * 109.47072 * 184.33424 * 1 2 3 25 25 H 1.09001 * 109.47229 * 304.33233 * 1 2 3 26 26 H 1.09005 * 109.47034 * 240.00086 * 2 1 3 27 27 H 1.08998 * 109.47930 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47103 * 300.00559 * 3 2 1 29 29 H 1.09005 * 109.46965 * 60.00043 * 3 2 1 30 30 H 1.09000 * 109.46718 * 303.13655 * 4 2 1 31 31 H 1.09001 * 109.47135 * 183.13909 * 4 2 1 32 32 H 1.08996 * 109.46116 * 65.82451 * 6 5 4 33 33 H 1.09002 * 109.45755 * 305.84255 * 6 5 4 34 34 H 1.08990 * 109.51008 * 60.76714 * 7 6 5 35 35 H 1.09011 * 109.50072 * 180.88881 * 7 6 5 36 36 H 1.08996 * 109.52246 * 297.75198 * 8 7 6 37 37 H 1.09003 * 109.46909 * 93.13977 * 12 11 9 38 38 H 1.09005 * 109.46806 * 213.13106 * 12 11 9 39 39 H 1.08996 * 109.47184 * 333.13189 * 12 11 9 40 40 H 0.96998 * 119.99349 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.50394 * 62.28686 * 21 8 7 42 42 H 1.09003 * 109.50120 * 182.40265 * 21 8 7 43 43 H 1.09004 * 109.46747 * 54.13807 * 22 5 4 44 44 H 1.09003 * 109.45876 * 294.16243 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6133 -2.1265 1.2119 6 6 2.4269 -2.8985 0.2641 7 6 1.8635 -4.3163 0.1433 8 6 1.8782 -4.9851 1.5206 9 6 1.2707 -6.3604 1.4191 10 8 0.8657 -6.7673 0.3506 11 7 1.1783 -7.1389 2.5154 12 6 1.6679 -6.6478 3.8059 13 6 0.6251 -8.3900 2.4232 14 1 0.5981 -8.8996 1.4714 15 6 0.0994 -9.0023 3.5543 16 7 -0.0709 -8.3090 4.6577 17 14 -0.3653 -10.8109 3.5066 18 1 0.8040 -11.6332 3.9090 19 1 -1.4902 -11.0579 4.4441 20 1 -0.7790 -11.1795 2.1289 21 6 1.0641 -4.1357 2.5005 22 6 1.6506 -2.7231 2.5528 23 1 -0.3633 0.4451 -0.9262 24 1 -0.3634 -1.0248 0.0777 25 1 -0.3634 0.5796 0.8486 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6315 -0.2410 2.1383 31 1 3.1286 -0.6728 1.2778 32 1 3.4552 -2.9456 0.6224 33 1 2.4043 -2.4144 -0.7123 34 1 0.8398 -4.2707 -0.2282 35 1 2.4769 -4.8940 -0.5483 36 1 2.9057 -5.0660 1.8752 37 1 0.8481 -6.1807 4.3517 38 1 2.0620 -7.4821 4.3863 39 1 2.4579 -5.9154 3.6399 40 1 -0.4382 -8.7364 5.4471 41 1 0.0278 -4.0873 2.1661 42 1 1.1063 -4.5843 3.4930 43 1 1.0644 -2.1117 3.2389 44 1 2.6826 -2.7711 2.9004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464600717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:40 Heat of formation + Delta-G solvation = -39.759609 kcal Electronic energy + Delta-G solvation = -21624.882285 eV Core-core repulsion = 18576.861683 eV Total energy + Delta-G solvation = -3048.020602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.55739 -37.99497 -35.59545 -34.64337 -32.39664 -31.37742 -30.42975 -27.13772 -26.83512 -26.02905 -24.51658 -22.98172 -22.67104 -19.99975 -19.75593 -18.54234 -16.84967 -16.10836 -15.80914 -15.24942 -14.78331 -14.55307 -14.25658 -14.07936 -13.89512 -13.49097 -13.11619 -12.82263 -12.74600 -12.38652 -12.23797 -12.04834 -11.64796 -11.53113 -11.34746 -11.20346 -11.02996 -10.97253 -10.93477 -10.75386 -10.60538 -10.46502 -10.33123 -10.24222 -10.04582 -9.82811 -8.96103 -8.25177 -8.13169 -7.61727 -6.25798 -3.82400 3.19279 3.27579 3.33491 3.96334 3.98504 4.18482 4.73134 4.86684 4.93059 5.07238 5.13695 5.17438 5.27200 5.39266 5.47503 5.52569 5.58033 5.60855 5.65484 5.72748 5.79780 5.83953 5.88330 5.93997 6.00560 6.05944 6.07911 6.20963 6.28236 6.35397 6.43034 6.45960 6.52108 6.70891 6.85899 6.93274 7.25360 7.26483 7.28980 7.61429 8.19972 8.55390 9.25538 9.50025 10.06905 10.77803 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042318 B = 0.004004 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.501196 B = 6992.139409 C = 7204.407028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.059 3.941 5 N -0.536 5.536 6 C 0.058 3.942 7 C -0.090 4.090 8 C -0.096 4.096 9 C 0.453 3.547 10 O -0.590 6.590 11 N -0.449 5.449 12 C 0.114 3.886 13 C -0.305 4.305 14 H 0.097 0.903 15 C 0.029 3.971 16 N -0.886 5.886 17 Si 0.926 3.074 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C -0.116 4.116 22 C 0.061 3.939 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 15.754 -2.412 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.069 4.069 5 N -0.260 5.260 6 C -0.070 4.070 7 C -0.128 4.128 8 C -0.118 4.118 9 C 0.241 3.759 10 O -0.475 6.475 11 N -0.167 5.167 12 C -0.030 4.030 13 C -0.433 4.433 14 H 0.115 0.885 15 C -0.173 4.173 16 N -0.525 5.525 17 Si 0.753 3.247 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.194 1.194 21 C -0.154 4.154 22 C -0.066 4.066 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.638 15.467 -2.872 16.401 hybrid contribution 0.645 -0.834 0.621 1.223 sum 5.283 14.634 -2.251 15.720 Atomic orbital electron populations 1.21722 0.94534 1.03028 1.00346 1.21095 0.96889 0.94987 0.98112 1.21828 1.00602 0.96321 1.01682 1.22154 0.97334 0.88948 0.98435 1.61880 1.54420 1.01334 1.08395 1.22169 0.93988 0.94710 0.96124 1.21313 1.02768 0.92666 0.96077 1.21155 0.99511 0.94278 0.96866 1.20029 0.84630 0.86103 0.85130 1.90499 1.53809 1.74712 1.28473 1.43569 1.52123 1.14256 1.06781 1.21602 0.96873 0.98166 0.86358 1.19670 1.35534 0.91256 0.96817 0.88499 1.25317 0.96272 1.00172 0.95570 1.69993 1.44187 1.35748 1.02621 0.85932 0.78009 0.82449 0.78351 1.20489 1.20990 1.19419 1.21817 1.00269 0.92955 1.00350 1.22101 0.98948 0.96133 0.89466 0.93738 0.90921 0.93446 0.91312 0.93066 0.92685 0.92802 0.91184 0.95083 0.95393 0.90965 0.90562 0.91436 0.90849 0.92029 0.91768 0.95460 0.92389 0.90936 0.89671 0.90953 0.95236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.12 37.15 0.34 -1.12 16 2 C -0.09 -0.91 2.97 -90.62 -0.27 -1.18 16 3 C -0.15 -1.19 9.19 37.15 0.34 -0.85 16 4 C 0.06 0.64 4.41 -3.82 -0.02 0.63 16 5 N -0.54 -7.08 3.88 -234.69 -0.91 -8.00 16 6 C 0.06 0.79 5.29 -3.84 -0.02 0.77 16 7 C -0.09 -1.54 4.68 -26.65 -0.12 -1.67 16 8 C -0.10 -1.81 1.77 -91.65 -0.16 -1.97 16 9 C 0.45 11.23 7.03 -10.99 -0.08 11.16 16 10 O -0.59 -16.72 15.67 5.55 0.09 -16.64 16 11 N -0.45 -11.66 3.02 -122.19 -0.37 -12.02 16 12 C 0.11 2.55 7.05 59.85 0.42 2.97 16 13 C -0.30 -8.66 9.29 -14.93 -0.14 -8.80 16 14 H 0.10 2.89 7.41 -52.48 -0.39 2.50 16 15 C 0.03 0.78 5.13 -17.46 -0.09 0.69 16 16 N -0.89 -23.77 10.60 55.50 0.59 -23.18 16 17 Si 0.93 21.11 29.57 -169.99 -5.03 16.09 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 C -0.12 -1.97 4.97 -26.65 -0.13 -2.10 16 22 C 0.06 0.83 5.42 -3.85 -0.02 0.81 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.91 7.57 -51.92 -0.39 0.52 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.72 6.76 -51.93 -0.35 0.37 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 31 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.90 6.68 -51.93 -0.35 0.55 16 34 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.07 1.18 8.14 -51.92 -0.42 0.75 16 36 H 0.07 1.29 7.40 -51.93 -0.38 0.91 16 37 H 0.06 1.42 6.55 -51.93 -0.34 1.08 16 38 H 0.06 1.52 7.13 -51.93 -0.37 1.15 16 39 H 0.03 0.51 5.75 -51.93 -0.30 0.21 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.48 4.70 -51.93 -0.24 1.23 16 43 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -30.40 333.67 -8.26 -38.66 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.71 Total: 0.74 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 0.05 Total: -0.68 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.69 Total: -43.20 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.09 Total: -16.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.40 -8.26 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464600717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.103 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds