Wall clock time and date at job start Mon Mar 30 2020 00:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 C 1.53004 * 109.47360 * 120.00220 * 2 1 3 5 5 N 1.46900 * 109.47195 * 63.14006 * 4 2 1 6 6 C 1.46845 * 111.00202 * 75.93500 * 5 4 2 7 7 C 1.53036 * 109.51323 * 185.83819 * 6 5 4 8 8 C 1.53119 * 109.27690 * 300.82142 * 7 6 5 9 9 C 1.50697 * 109.52197 * 177.62578 * 8 7 6 10 10 O 1.21294 * 120.00355 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00068 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99675 * 0.02562 * 11 9 8 13 13 C 1.37098 * 120.00288 * 179.97438 * 11 9 8 14 14 H 1.08005 * 119.99613 * 22.55848 * 13 11 9 15 15 C 1.38952 * 120.00362 * 202.55199 * 13 11 9 16 16 N 1.31418 * 119.99505 * 11.24512 * 15 13 11 17 17 Si 1.86791 * 120.00117 * 191.24208 * 15 13 11 18 18 H 1.48500 * 109.47192 * 90.00238 * 17 15 13 19 19 H 1.48505 * 109.47409 * 210.00051 * 17 15 13 20 20 H 1.48496 * 109.47366 * 330.00177 * 17 15 13 21 21 C 1.53113 * 109.15848 * 57.65774 * 8 7 6 22 22 C 1.46820 * 110.98625 * 200.15167 * 5 4 2 23 23 H 1.08992 * 109.47310 * 64.33481 * 1 2 3 24 24 H 1.09012 * 109.47072 * 184.33424 * 1 2 3 25 25 H 1.09001 * 109.47229 * 304.33233 * 1 2 3 26 26 H 1.09005 * 109.47034 * 240.00086 * 2 1 3 27 27 H 1.08998 * 109.47930 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47103 * 300.00559 * 3 2 1 29 29 H 1.09005 * 109.46965 * 60.00043 * 3 2 1 30 30 H 1.09000 * 109.46718 * 303.13655 * 4 2 1 31 31 H 1.09001 * 109.47135 * 183.13909 * 4 2 1 32 32 H 1.08996 * 109.46116 * 65.82451 * 6 5 4 33 33 H 1.09002 * 109.45755 * 305.84255 * 6 5 4 34 34 H 1.08990 * 109.51008 * 60.76714 * 7 6 5 35 35 H 1.09011 * 109.50072 * 180.88881 * 7 6 5 36 36 H 1.08996 * 109.52246 * 297.75198 * 8 7 6 37 37 H 1.09003 * 109.46909 * 93.13977 * 12 11 9 38 38 H 1.09005 * 109.46806 * 213.13106 * 12 11 9 39 39 H 1.08996 * 109.47184 * 333.13189 * 12 11 9 40 40 H 0.96998 * 119.99349 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.50394 * 62.28686 * 21 8 7 42 42 H 1.09003 * 109.50120 * 182.40265 * 21 8 7 43 43 H 1.09004 * 109.46747 * 54.13807 * 22 5 4 44 44 H 1.09003 * 109.45876 * 294.16243 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6133 -2.1265 1.2119 6 6 2.4269 -2.8985 0.2641 7 6 1.8635 -4.3163 0.1433 8 6 1.8782 -4.9851 1.5206 9 6 1.2707 -6.3604 1.4191 10 8 0.8657 -6.7673 0.3506 11 7 1.1783 -7.1389 2.5154 12 6 1.6679 -6.6478 3.8059 13 6 0.6251 -8.3900 2.4232 14 1 0.5981 -8.8996 1.4714 15 6 0.0994 -9.0023 3.5543 16 7 -0.0709 -8.3090 4.6577 17 14 -0.3653 -10.8109 3.5066 18 1 0.8040 -11.6332 3.9090 19 1 -1.4902 -11.0579 4.4441 20 1 -0.7790 -11.1795 2.1289 21 6 1.0641 -4.1357 2.5005 22 6 1.6506 -2.7231 2.5528 23 1 -0.3633 0.4451 -0.9262 24 1 -0.3634 -1.0248 0.0777 25 1 -0.3634 0.5796 0.8486 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6315 -0.2410 2.1383 31 1 3.1286 -0.6728 1.2778 32 1 3.4552 -2.9456 0.6224 33 1 2.4043 -2.4144 -0.7123 34 1 0.8398 -4.2707 -0.2282 35 1 2.4769 -4.8940 -0.5483 36 1 2.9057 -5.0660 1.8752 37 1 0.8481 -6.1807 4.3517 38 1 2.0620 -7.4821 4.3863 39 1 2.4579 -5.9154 3.6399 40 1 -0.4382 -8.7364 5.4471 41 1 0.0278 -4.0873 2.1661 42 1 1.1063 -4.5843 3.4930 43 1 1.0644 -2.1117 3.2389 44 1 2.6826 -2.7711 2.9004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464600717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:39 Heat of formation + Delta-G solvation = -58.184190 kcal Electronic energy + Delta-G solvation = -21625.681235 eV Core-core repulsion = 18576.861683 eV Total energy + Delta-G solvation = -3048.819552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10177 -39.43528 -36.80858 -36.53363 -33.94789 -33.07727 -31.73240 -28.45185 -27.86235 -27.60570 -26.22409 -24.23320 -23.99925 -21.36776 -20.64689 -20.21482 -18.91582 -17.87088 -17.09451 -16.45421 -16.20639 -16.10063 -15.80301 -15.56279 -15.13024 -14.71390 -14.52250 -14.26479 -13.99407 -13.65609 -13.43500 -13.23314 -13.08415 -13.05041 -12.92580 -12.63929 -12.55390 -12.33996 -12.23993 -12.14981 -12.04551 -11.77296 -11.61187 -11.51031 -11.45018 -11.11744 -10.95063 -10.21113 -9.67885 -9.13414 -8.32378 -5.98347 1.36344 1.39443 1.51802 2.03891 2.27751 2.98311 3.07274 3.11227 3.78014 3.85466 3.98162 4.04559 4.17793 4.30036 4.32251 4.37085 4.47755 4.49084 4.65369 4.67928 4.73318 4.78316 4.85084 4.90456 4.93823 4.96365 5.01786 5.03531 5.13840 5.16579 5.21524 5.29075 5.35505 5.42415 5.44006 5.45669 5.53793 5.61839 6.10455 6.22437 6.29278 6.49929 7.17757 7.49014 8.05671 8.68934 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042318 B = 0.004004 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.501196 B = 6992.139409 C = 7204.407028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.141 4.141 4 C 0.062 3.938 5 N -0.550 5.550 6 C 0.069 3.931 7 C -0.085 4.085 8 C -0.086 4.086 9 C 0.439 3.561 10 O -0.637 6.637 11 N -0.463 5.463 12 C 0.126 3.874 13 C -0.348 4.348 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.895 5.895 17 Si 0.989 3.011 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.278 1.278 21 C -0.108 4.108 22 C 0.070 3.930 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.273 0.727 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 17.463 -1.323 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.066 4.066 5 N -0.275 5.275 6 C -0.059 4.059 7 C -0.123 4.123 8 C -0.108 4.108 9 C 0.229 3.771 10 O -0.525 6.525 11 N -0.181 5.181 12 C -0.017 4.017 13 C -0.476 4.476 14 H 0.086 0.914 15 C -0.203 4.203 16 N -0.534 5.534 17 Si 0.813 3.187 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.203 1.203 21 C -0.146 4.146 22 C -0.058 4.058 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.854 17.207 -1.748 18.259 hybrid contribution 0.216 -1.366 0.269 1.409 sum 6.070 15.841 -1.479 17.028 Atomic orbital electron populations 1.21681 0.95264 1.01506 1.00927 1.21093 0.96212 0.96140 0.97529 1.21775 1.01041 0.94881 1.02216 1.22204 0.98044 0.87136 0.99169 1.61825 1.55016 1.02618 1.08051 1.22034 0.94324 0.92233 0.97280 1.21240 1.01201 0.95125 0.94744 1.21146 1.00176 0.90761 0.98672 1.21147 0.83891 0.87933 0.84115 1.90452 1.55744 1.76176 1.30165 1.43842 1.52110 1.13903 1.08253 1.21551 0.97448 0.98162 0.84555 1.19622 1.38377 0.93111 0.96483 0.91440 1.26060 0.95398 1.04063 0.94805 1.70060 1.43365 1.37129 1.02864 0.85003 0.78365 0.77434 0.77945 1.18982 1.19657 1.20345 1.21723 0.98635 0.95151 0.99130 1.22015 0.99857 0.93783 0.90153 0.93168 0.93430 0.92900 0.91940 0.92309 0.92237 0.92244 0.90295 0.93950 0.93809 0.89634 0.93475 0.92270 0.88663 0.92896 0.93377 0.91507 0.91705 0.93719 0.90015 0.89330 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.12 71.98 0.66 -2.01 16 2 C -0.09 -1.58 2.97 -10.80 -0.03 -1.61 16 3 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 4 C 0.06 1.14 4.41 86.30 0.38 1.52 16 5 N -0.55 -13.30 3.88 -896.43 -3.48 -16.78 16 6 C 0.07 1.74 5.29 86.33 0.46 2.19 16 7 C -0.08 -2.91 4.68 30.65 0.14 -2.77 16 8 C -0.09 -3.21 1.77 -11.46 -0.02 -3.23 16 9 C 0.44 22.49 7.03 87.66 0.62 23.11 16 10 O -0.64 -38.05 15.67 -3.07 -0.05 -38.10 16 11 N -0.46 -24.69 3.02 -658.87 -1.99 -26.68 16 12 C 0.13 5.60 7.05 127.77 0.90 6.50 16 13 C -0.35 -20.50 9.29 84.04 0.78 -19.72 16 14 H 0.07 4.27 7.41 -2.91 -0.02 4.25 16 15 C 0.00 -0.09 5.13 84.93 0.44 0.35 16 16 N -0.90 -47.98 10.60 21.66 0.23 -47.75 16 17 Si 0.99 43.50 29.57 68.60 2.03 45.53 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.11 -3.59 4.97 30.64 0.15 -3.44 16 22 C 0.07 1.71 5.42 86.33 0.47 2.17 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 1.17 7.57 -2.38 -0.02 1.15 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 1.17 6.76 -2.38 -0.02 1.16 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 1.34 7.79 -2.39 -0.02 1.33 16 31 H 0.04 0.72 8.00 -2.39 -0.02 0.70 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.95 6.68 -2.39 -0.02 1.93 16 34 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 35 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.10 3.16 7.40 -2.39 -0.02 3.14 16 37 H 0.05 2.44 6.55 -2.39 -0.02 2.42 16 38 H 0.05 2.27 7.13 -2.38 -0.02 2.25 16 39 H 0.07 2.39 5.75 -2.39 -0.01 2.38 16 40 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 2.75 4.70 -2.39 -0.01 2.74 16 43 H 0.09 1.93 7.93 -2.38 -0.02 1.91 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.25 333.67 3.30 -64.96 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.95 Total: 16.96 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.60 Total: 1.86 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -5.24 Total: -91.21 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.05 Total: -38.10 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -68.25 3.30 -64.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464600717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.774 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds