Wall clock time and date at job start Mon Mar 30 2020 00:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46842 * 2 1 4 4 C 1.53003 * 109.46845 * 183.76857 * 3 2 1 5 5 H 1.08995 * 109.47579 * 54.28671 * 4 3 2 6 6 C 1.53003 * 109.47118 * 294.28513 * 4 3 2 7 7 C 1.53001 * 109.47113 * 297.35767 * 6 4 3 8 8 C 1.50701 * 109.47006 * 174.29136 * 4 3 2 9 9 O 1.21280 * 119.99856 * 359.97438 * 8 4 3 10 10 N 1.34781 * 119.99859 * 179.97438 * 8 4 3 11 11 C 1.46497 * 119.99625 * 179.97438 * 10 8 4 12 12 H 1.08999 * 110.64290 * 323.30992 * 11 10 8 13 13 C 1.55165 * 110.71767 * 199.97812 * 11 10 8 14 14 C 1.55133 * 101.48379 * 205.97022 * 13 11 10 15 15 N 1.47431 * 104.72241 * 37.29615 * 14 13 11 16 16 C 1.36934 * 125.64915 * 155.81704 * 15 14 13 17 17 H 1.08003 * 120.00060 * 5.49567 * 16 15 14 18 18 C 1.38803 * 119.99882 * 185.48911 * 16 15 14 19 19 N 1.31617 * 120.00684 * 7.26215 * 18 16 15 20 20 Si 1.86810 * 119.99976 * 187.25646 * 18 16 15 21 21 H 1.48502 * 109.47005 * 265.01873 * 20 18 16 22 22 H 1.48501 * 109.46886 * 25.01436 * 20 18 16 23 23 H 1.48493 * 109.46939 * 145.01515 * 20 18 16 24 24 C 1.47021 * 108.70190 * 335.55066 * 15 14 13 25 25 H 1.08999 * 109.46826 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46746 * 299.99805 * 1 2 3 27 27 H 1.08991 * 109.47577 * 60.00173 * 1 2 3 28 28 H 1.08999 * 109.47065 * 240.00037 * 2 1 3 29 29 H 1.08999 * 109.47764 * 120.00156 * 2 1 3 30 30 H 1.08992 * 109.47230 * 63.76966 * 3 2 1 31 31 H 1.08999 * 109.46885 * 303.75890 * 3 2 1 32 32 H 1.08999 * 109.47007 * 57.35171 * 6 4 3 33 33 H 1.09001 * 109.47207 * 177.35538 * 6 4 3 34 34 H 1.09004 * 109.47153 * 185.29333 * 7 6 4 35 35 H 1.09003 * 109.46698 * 305.29094 * 7 6 4 36 36 H 1.08995 * 109.47509 * 65.29322 * 7 6 4 37 37 H 0.96993 * 120.00273 * 0.02562 * 10 8 4 38 38 H 1.08994 * 111.00209 * 324.20485 * 13 11 10 39 39 H 1.09000 * 111.00261 * 88.02615 * 13 11 10 40 40 H 1.08993 * 110.49933 * 278.45483 * 14 13 11 41 41 H 1.08998 * 110.34247 * 156.05903 * 14 13 11 42 42 H 0.96999 * 120.00815 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88152 * 120.70645 * 24 15 14 44 44 H 1.08999 * 109.88274 * 241.87279 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5670 1.4436 -0.0948 5 1 3.8776 0.8625 -0.9630 6 6 4.1571 0.8220 1.1726 7 6 3.7759 1.6751 2.3842 8 6 4.0606 2.8605 -0.2360 9 8 3.2688 3.7789 -0.2590 10 7 5.3818 3.1070 -0.3367 11 6 5.8615 4.4843 -0.4745 12 1 5.1788 5.0691 -1.0909 13 6 7.2970 4.5093 -1.0631 14 6 7.8357 5.8534 -0.5063 15 7 7.2699 5.9501 0.8517 16 6 7.7954 6.6785 1.8852 17 1 8.6501 7.3168 1.7162 18 6 7.2296 6.5967 3.1501 19 7 6.2822 5.7156 3.3916 20 14 7.8129 7.7372 4.5098 21 1 8.8534 7.0521 5.3181 22 1 8.3838 8.9703 3.9107 23 1 6.6653 8.0958 5.3813 24 6 6.0444 5.1400 0.9106 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7328 1.9365 0.9218 31 1 1.6226 1.9754 -0.8544 32 1 3.7633 -0.1863 1.3000 33 1 5.2428 0.7798 1.0851 34 1 4.2729 1.2865 3.2731 35 1 4.0874 2.7059 2.2151 36 1 2.6960 1.6407 2.5275 37 1 6.0150 2.3724 -0.3186 38 1 7.8842 3.6674 -0.6966 39 1 7.2722 4.5211 -2.1527 40 1 7.4925 6.6859 -1.1204 41 1 8.9247 5.8363 -0.4632 42 1 5.8870 5.6582 4.2756 43 1 6.1457 4.3695 1.6749 44 1 5.1891 5.7774 1.1348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479966915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:51 Heat of formation + Delta-G solvation = -38.646705 kcal Electronic energy + Delta-G solvation = -21601.532040 eV Core-core repulsion = 18553.559697 eV Total energy + Delta-G solvation = -3047.972343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83864 -37.44520 -36.03202 -33.85629 -32.87932 -31.84953 -29.00832 -28.58385 -27.24699 -25.07300 -24.19791 -22.81797 -21.10234 -20.45966 -19.77361 -18.94446 -16.87869 -16.49996 -15.97171 -15.65540 -15.08032 -14.74190 -14.23408 -13.94209 -13.69117 -13.36145 -12.96968 -12.75715 -12.55390 -12.43609 -11.98050 -11.96301 -11.71927 -11.53390 -11.17928 -11.03079 -11.00988 -10.90643 -10.88335 -10.77179 -10.50330 -10.42651 -10.31353 -10.04247 -9.92977 -9.66835 -9.23395 -8.62304 -8.38676 -6.79186 -5.65289 -3.02745 3.10154 3.41904 3.47656 3.49984 3.61974 4.53201 4.73811 4.81208 4.91646 5.13690 5.17132 5.23315 5.31520 5.46613 5.49057 5.56071 5.62072 5.71024 5.71995 5.79237 5.81308 5.86424 5.91288 5.94718 6.07570 6.17382 6.18837 6.25781 6.29015 6.32017 6.45889 6.52669 6.61434 6.66754 6.83630 6.97723 7.53185 7.68569 7.89084 8.01058 8.30663 8.71738 9.24076 9.85600 10.50823 11.43167 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.004848 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.779907 B = 5774.596094 C = 6536.486692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.108 4.108 5 H 0.090 0.910 6 C -0.113 4.113 7 C -0.158 4.158 8 C 0.518 3.482 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.116 3.884 12 H 0.083 0.917 13 C -0.137 4.137 14 C 0.135 3.865 15 N -0.605 5.605 16 C -0.231 4.231 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.915 5.915 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.168 3.832 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.394 0.606 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.068 0.932 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.136 -13.332 -8.122 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.129 4.129 5 H 0.108 0.892 6 C -0.150 4.150 7 C -0.216 4.216 8 C 0.304 3.696 9 O -0.417 6.417 10 N -0.365 5.365 11 C 0.011 3.989 12 H 0.101 0.899 13 C -0.176 4.176 14 C 0.008 3.992 15 N -0.332 5.332 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.042 3.958 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.757 -12.610 -7.911 15.960 hybrid contribution 0.632 0.262 0.801 1.054 sum -5.125 -12.348 -7.109 15.142 Atomic orbital electron populations 1.21762 0.95986 1.01200 1.01992 1.21586 0.95798 0.96978 1.01826 1.21458 0.92564 0.96275 1.03743 1.21419 0.97656 0.93902 0.99947 0.89195 1.21519 1.00443 0.99322 0.93750 1.21866 1.01247 1.01286 0.97167 1.20486 0.82419 0.91003 0.75711 1.90691 1.54915 1.46429 1.49697 1.45962 1.07015 1.09088 1.74407 1.22357 0.94287 0.82119 1.00165 0.89912 1.23040 0.95717 0.99864 0.99022 1.21585 0.96809 0.93182 0.87627 1.44436 1.25783 1.56420 1.06578 1.19037 1.11525 1.18311 0.87062 0.90440 1.24811 0.99056 0.99211 0.97270 1.69959 1.29217 1.36034 1.21049 0.86138 0.77516 0.80316 0.82010 1.21694 1.20652 1.21652 1.21535 0.88697 0.94711 0.90843 0.93043 0.92672 0.92787 0.92279 0.91797 0.90783 0.91343 0.91138 0.91687 0.92635 0.91296 0.92677 0.77198 0.91260 0.91777 0.96128 0.93908 0.93826 0.91378 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.17 5.61 -26.73 -0.15 -1.32 16 3 C -0.10 -1.26 3.88 -26.73 -0.10 -1.36 16 4 C -0.11 -1.34 2.50 -91.77 -0.23 -1.57 16 5 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.11 -1.31 5.42 -26.73 -0.14 -1.45 16 7 C -0.16 -2.31 9.30 37.16 0.35 -1.96 16 8 C 0.52 8.74 5.67 -10.98 -0.06 8.67 16 9 O -0.54 -11.47 15.63 5.56 0.09 -11.38 16 10 N -0.71 -11.65 5.03 -52.03 -0.26 -11.92 16 11 C 0.12 2.26 3.23 -66.09 -0.21 2.04 16 12 H 0.08 1.71 7.69 -51.93 -0.40 1.31 16 13 C -0.14 -2.33 6.71 -24.46 -0.16 -2.49 16 14 C 0.13 2.78 7.24 -2.40 -0.02 2.76 16 15 N -0.61 -15.76 3.39 -169.93 -0.58 -16.34 16 16 C -0.23 -6.55 10.26 -15.06 -0.15 -6.71 16 17 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 18 C -0.01 -0.20 5.45 -17.43 -0.10 -0.29 16 19 N -0.92 -27.42 10.46 55.49 0.58 -26.84 16 20 Si 0.91 22.46 29.56 -169.99 -5.02 17.44 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C 0.17 4.22 5.19 -3.06 -0.02 4.21 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16 30 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 31 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 32 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 33 H 0.06 0.72 7.64 -51.93 -0.40 0.33 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.29 6.95 -51.93 -0.36 0.93 16 36 H 0.05 0.75 6.65 -51.93 -0.35 0.41 16 37 H 0.39 5.28 7.98 -40.82 -0.33 4.96 16 38 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.07 1.88 6.77 -51.93 -0.35 1.53 16 44 H 0.03 0.92 7.97 -51.93 -0.41 0.51 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -32.72 342.40 -8.46 -41.19 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.79 Total: 3.14 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.64 Total: -0.46 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.26 Total: -55.09 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.72 -8.46 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479966915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.540 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds