Wall clock time and date at job start Mon Mar 30 2020 00:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46842 * 2 1 4 4 C 1.53003 * 109.46845 * 183.76857 * 3 2 1 5 5 H 1.08995 * 109.47579 * 54.28671 * 4 3 2 6 6 C 1.53003 * 109.47118 * 294.28513 * 4 3 2 7 7 C 1.53001 * 109.47113 * 297.35767 * 6 4 3 8 8 C 1.50701 * 109.47006 * 174.29136 * 4 3 2 9 9 O 1.21280 * 119.99856 * 359.97438 * 8 4 3 10 10 N 1.34781 * 119.99859 * 179.97438 * 8 4 3 11 11 C 1.46497 * 119.99625 * 179.97438 * 10 8 4 12 12 H 1.08999 * 110.64290 * 323.30992 * 11 10 8 13 13 C 1.55165 * 110.71767 * 199.97812 * 11 10 8 14 14 C 1.55133 * 101.48379 * 205.97022 * 13 11 10 15 15 N 1.47431 * 104.72241 * 37.29615 * 14 13 11 16 16 C 1.36934 * 125.64915 * 155.81704 * 15 14 13 17 17 H 1.08003 * 120.00060 * 5.49567 * 16 15 14 18 18 C 1.38803 * 119.99882 * 185.48911 * 16 15 14 19 19 N 1.31617 * 120.00684 * 7.26215 * 18 16 15 20 20 Si 1.86810 * 119.99976 * 187.25646 * 18 16 15 21 21 H 1.48502 * 109.47005 * 265.01873 * 20 18 16 22 22 H 1.48501 * 109.46886 * 25.01436 * 20 18 16 23 23 H 1.48493 * 109.46939 * 145.01515 * 20 18 16 24 24 C 1.47021 * 108.70190 * 335.55066 * 15 14 13 25 25 H 1.08999 * 109.46826 * 180.02562 * 1 2 3 26 26 H 1.09011 * 109.46746 * 299.99805 * 1 2 3 27 27 H 1.08991 * 109.47577 * 60.00173 * 1 2 3 28 28 H 1.08999 * 109.47065 * 240.00037 * 2 1 3 29 29 H 1.08999 * 109.47764 * 120.00156 * 2 1 3 30 30 H 1.08992 * 109.47230 * 63.76966 * 3 2 1 31 31 H 1.08999 * 109.46885 * 303.75890 * 3 2 1 32 32 H 1.08999 * 109.47007 * 57.35171 * 6 4 3 33 33 H 1.09001 * 109.47207 * 177.35538 * 6 4 3 34 34 H 1.09004 * 109.47153 * 185.29333 * 7 6 4 35 35 H 1.09003 * 109.46698 * 305.29094 * 7 6 4 36 36 H 1.08995 * 109.47509 * 65.29322 * 7 6 4 37 37 H 0.96993 * 120.00273 * 0.02562 * 10 8 4 38 38 H 1.08994 * 111.00209 * 324.20485 * 13 11 10 39 39 H 1.09000 * 111.00261 * 88.02615 * 13 11 10 40 40 H 1.08993 * 110.49933 * 278.45483 * 14 13 11 41 41 H 1.08998 * 110.34247 * 156.05903 * 14 13 11 42 42 H 0.96999 * 120.00815 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.88152 * 120.70645 * 24 15 14 44 44 H 1.08999 * 109.88274 * 241.87279 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5670 1.4436 -0.0948 5 1 3.8776 0.8625 -0.9630 6 6 4.1571 0.8220 1.1726 7 6 3.7759 1.6751 2.3842 8 6 4.0606 2.8605 -0.2360 9 8 3.2688 3.7789 -0.2590 10 7 5.3818 3.1070 -0.3367 11 6 5.8615 4.4843 -0.4745 12 1 5.1788 5.0691 -1.0909 13 6 7.2970 4.5093 -1.0631 14 6 7.8357 5.8534 -0.5063 15 7 7.2699 5.9501 0.8517 16 6 7.7954 6.6785 1.8852 17 1 8.6501 7.3168 1.7162 18 6 7.2296 6.5967 3.1501 19 7 6.2822 5.7156 3.3916 20 14 7.8129 7.7372 4.5098 21 1 8.8534 7.0521 5.3181 22 1 8.3838 8.9703 3.9107 23 1 6.6653 8.0958 5.3813 24 6 6.0444 5.1400 0.9106 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5137 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7328 1.9365 0.9218 31 1 1.6226 1.9754 -0.8544 32 1 3.7633 -0.1863 1.3000 33 1 5.2428 0.7798 1.0851 34 1 4.2729 1.2865 3.2731 35 1 4.0874 2.7059 2.2151 36 1 2.6960 1.6407 2.5275 37 1 6.0150 2.3724 -0.3186 38 1 7.8842 3.6674 -0.6966 39 1 7.2722 4.5211 -2.1527 40 1 7.4925 6.6859 -1.1204 41 1 8.9247 5.8363 -0.4632 42 1 5.8870 5.6582 4.2756 43 1 6.1457 4.3695 1.6749 44 1 5.1891 5.7774 1.1348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479966915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:50 Heat of formation + Delta-G solvation = -60.349585 kcal Electronic energy + Delta-G solvation = -21602.473147 eV Core-core repulsion = 18553.559697 eV Total energy + Delta-G solvation = -3048.913450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20635 -39.08000 -37.21954 -35.52751 -34.12691 -33.47525 -30.73741 -29.82715 -28.92835 -26.66155 -25.65320 -23.91993 -22.40514 -22.03038 -21.42028 -20.14251 -18.91454 -17.83389 -17.33932 -16.90725 -16.79316 -16.16616 -15.81108 -15.37531 -14.80849 -14.59879 -14.35727 -14.32579 -14.06888 -13.73804 -13.52751 -13.29750 -13.01388 -12.92172 -12.73632 -12.69858 -12.61466 -12.23889 -12.12025 -11.94077 -11.88396 -11.85415 -11.78802 -11.53259 -11.46500 -11.25165 -10.77987 -10.61177 -9.95922 -8.91975 -7.83840 -5.24335 1.42577 1.45525 1.54572 1.74977 2.28040 2.49037 3.32321 3.60343 3.77753 3.81804 3.86212 3.94604 4.11475 4.25109 4.26197 4.30685 4.42064 4.42893 4.62038 4.68113 4.69864 4.74977 4.82735 4.94298 4.97920 5.01764 5.04001 5.14482 5.17777 5.19384 5.26060 5.32646 5.38886 5.41855 5.44843 5.47910 5.58448 5.59987 5.84298 6.18299 6.68569 7.05580 7.40005 7.75477 8.39335 9.22776 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.004848 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.779907 B = 5774.596094 C = 6536.486692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.101 4.101 4 C -0.097 4.097 5 H 0.130 0.870 6 C -0.105 4.105 7 C -0.156 4.156 8 C 0.511 3.489 9 O -0.593 6.593 10 N -0.704 5.704 11 C 0.128 3.872 12 H 0.069 0.931 13 C -0.114 4.114 14 C 0.124 3.876 15 N -0.628 5.628 16 C -0.245 4.245 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.947 5.947 20 Si 0.978 3.022 21 H -0.281 1.281 22 H -0.267 1.267 23 H -0.299 1.299 24 C 0.184 3.816 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.243 0.757 43 H 0.037 0.963 44 H -0.031 1.031 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -15.686 -9.672 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.139 4.139 4 C -0.118 4.118 5 H 0.148 0.852 6 C -0.143 4.143 7 C -0.214 4.214 8 C 0.299 3.701 9 O -0.473 6.473 10 N -0.355 5.355 11 C 0.022 3.978 12 H 0.087 0.913 13 C -0.152 4.152 14 C -0.001 4.001 15 N -0.355 5.355 16 C -0.374 4.374 17 H 0.104 0.896 18 C -0.261 4.261 19 N -0.596 5.596 20 Si 0.806 3.194 21 H -0.208 1.208 22 H -0.192 1.192 23 H -0.226 1.226 24 C 0.057 3.943 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.250 0.750 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.055 0.945 44 H -0.013 1.013 Dipole moment (debyes) X Y Z Total from point charges -4.333 -14.992 -9.501 18.270 hybrid contribution 0.180 1.064 1.277 1.672 sum -4.153 -13.928 -8.224 16.699 Atomic orbital electron populations 1.21784 0.95883 1.02126 1.01388 1.21554 0.95905 0.94638 1.03296 1.21431 0.92605 0.98182 1.01677 1.21483 0.97515 0.90867 1.01977 0.85184 1.21548 1.01272 1.00082 0.91383 1.21827 1.01465 0.98826 0.99241 1.21456 0.81984 0.92632 0.74015 1.90670 1.56216 1.48570 1.51859 1.45815 1.07510 1.08252 1.73900 1.21944 0.96181 0.83351 0.96329 0.91330 1.22971 0.92809 0.98162 1.01296 1.21873 0.97619 0.95570 0.85074 1.44764 1.26198 1.56213 1.08315 1.19492 1.11521 1.18430 0.87935 0.89559 1.25706 0.99567 1.00947 0.99867 1.70214 1.30654 1.37760 1.20937 0.85079 0.76736 0.78776 0.78858 1.20799 1.19177 1.22557 1.21179 0.86505 0.92908 0.93675 0.91283 0.93677 0.93150 0.90239 0.90682 0.93492 0.92953 0.87507 0.90581 0.92211 0.96510 0.92384 0.75017 0.89500 0.87457 0.95543 0.92464 0.94732 0.94481 1.01281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.76 16 2 C -0.12 -1.87 5.61 30.60 0.17 -1.70 16 3 C -0.10 -2.40 3.88 30.60 0.12 -2.28 16 4 C -0.10 -2.23 2.50 -11.54 -0.03 -2.26 16 5 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.11 -2.20 5.42 30.60 0.17 -2.04 16 7 C -0.16 -4.65 9.30 71.98 0.67 -3.98 16 8 C 0.51 17.37 5.67 87.66 0.50 17.87 16 9 O -0.59 -26.56 15.63 -3.03 -0.05 -26.61 16 10 N -0.70 -22.50 5.03 -436.90 -2.20 -24.70 16 11 C 0.13 5.03 3.23 46.18 0.15 5.18 16 12 H 0.07 2.90 7.69 -2.39 -0.02 2.88 16 13 C -0.11 -3.54 6.71 32.07 0.22 -3.33 16 14 C 0.12 4.93 7.24 86.93 0.63 5.56 16 15 N -0.63 -33.37 3.39 -691.55 -2.35 -35.72 16 16 C -0.24 -14.13 10.26 84.03 0.86 -13.27 16 17 H 0.09 4.69 7.84 -2.91 -0.02 4.67 16 18 C -0.07 -4.00 5.45 84.86 0.46 -3.54 16 19 N -0.95 -59.73 10.46 21.65 0.23 -59.50 16 20 Si 0.98 47.26 29.56 68.60 2.03 49.29 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 24 C 0.18 9.74 5.19 86.73 0.45 10.19 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.06 6.71 -2.39 -0.02 1.04 16 30 H 0.05 1.36 6.34 -2.39 -0.02 1.34 16 31 H 0.05 1.40 7.93 -2.39 -0.02 1.38 16 32 H 0.11 1.56 6.55 -2.39 -0.02 1.55 16 33 H 0.08 1.46 7.64 -2.39 -0.02 1.44 16 34 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.02 0.65 6.95 -2.39 -0.02 0.63 16 36 H 0.06 1.64 6.65 -2.39 -0.02 1.62 16 37 H 0.41 10.07 7.98 -92.71 -0.74 9.33 16 38 H 0.09 2.44 8.00 -2.39 -0.02 2.43 16 39 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.04 2.17 6.77 -2.39 -0.02 2.16 16 44 H -0.03 -1.99 7.97 -2.39 -0.02 -2.01 16 Total: -1.00 -78.04 342.40 2.96 -75.07 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.22 Total: 17.54 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.08 Total: 4.63 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -4.32 Total: -119.93 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -78.04 2.96 -75.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479966915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.724 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds