Wall clock time and date at job start Mon Mar 30 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47427 * 2 1 4 4 C 1.53004 * 109.46861 * 119.99836 * 2 1 3 5 5 C 1.50706 * 109.46875 * 174.99931 * 4 2 1 6 6 O 1.21277 * 120.00085 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99657 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99783 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.53931 * 36.15396 * 8 7 5 10 10 C 1.54270 * 110.48451 * 273.54326 * 8 7 5 11 11 C 1.53869 * 106.63967 * 217.73604 * 10 8 7 12 12 C 1.54268 * 106.60115 * 359.97438 * 11 10 8 13 13 C 1.54895 * 104.19476 * 23.60777 * 12 11 10 14 14 H 1.09001 * 110.75082 * 80.37254 * 13 12 11 15 15 C 1.53000 * 110.75739 * 203.74412 * 13 12 11 16 16 N 1.46495 * 109.46909 * 293.54897 * 15 13 12 17 17 C 1.36943 * 119.99732 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00038 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99785 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47393 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47245 * 120.00004 * 21 19 17 24 24 H 1.48507 * 109.47282 * 239.99975 * 21 19 17 25 25 H 1.09002 * 109.47142 * 300.00217 * 1 2 3 26 26 H 1.09007 * 109.47012 * 59.99992 * 1 2 3 27 27 H 1.08994 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47142 * 239.99783 * 2 1 3 29 29 H 1.09002 * 109.47136 * 59.99779 * 3 2 1 30 30 H 1.09005 * 109.47522 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47031 * 299.99996 * 3 2 1 32 32 H 1.08996 * 109.47124 * 55.00469 * 4 2 1 33 33 H 1.08994 * 109.47475 * 294.99560 * 4 2 1 34 34 H 0.97000 * 120.00550 * 359.97438 * 7 5 4 35 35 H 1.09002 * 110.03399 * 98.42602 * 10 8 7 36 36 H 1.08995 * 110.02943 * 337.04502 * 10 8 7 37 37 H 1.08999 * 110.03405 * 119.26051 * 11 10 8 38 38 H 1.09001 * 110.03705 * 240.64196 * 11 10 8 39 39 H 1.08997 * 110.48788 * 142.28685 * 12 11 10 40 40 H 1.09000 * 110.48806 * 264.79985 * 12 11 10 41 41 H 1.09001 * 109.47000 * 53.54501 * 15 13 12 42 42 H 1.09001 * 109.47066 * 173.54524 * 15 13 12 43 43 H 0.97001 * 120.00680 * 359.97438 * 16 15 13 44 44 H 0.97005 * 119.99636 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2404 7 7 4.2148 -1.4322 2.1891 8 6 5.6749 -1.5369 2.1307 9 1 6.1044 -0.6445 1.6755 10 6 6.0949 -2.7979 1.3476 11 6 7.3331 -3.3678 2.0615 12 6 7.6237 -2.4330 3.2538 13 6 6.2610 -1.7580 3.5481 14 1 5.6204 -2.4193 4.1314 15 6 6.4616 -0.4222 4.2666 16 7 7.0196 -0.6637 5.5994 17 6 7.2852 0.3908 6.4319 18 1 7.0835 1.4004 6.1056 19 6 7.8134 0.1620 7.6950 20 7 8.0587 -1.0685 8.0927 21 14 8.1763 1.6003 8.8302 22 1 7.8148 2.8705 8.1510 23 1 7.3803 1.4607 10.0761 24 1 9.6229 1.6135 9.1658 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.7324 -1.7961 2.9480 35 1 6.3449 -2.5335 0.3202 36 1 5.2876 -3.5302 1.3585 37 1 7.1266 -4.3764 2.4195 38 1 8.1840 -3.3807 1.3803 39 1 7.9587 -3.0084 4.1168 40 1 8.3701 -1.6871 2.9807 41 1 7.1483 0.1997 3.6924 42 1 5.5025 0.0872 4.3610 43 1 7.2004 -1.5705 5.8926 44 1 8.4275 -1.2283 8.9755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482667403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:49 Heat of formation + Delta-G solvation = -61.288263 kcal Electronic energy + Delta-G solvation = -20896.381772 eV Core-core repulsion = 17847.427617 eV Total energy + Delta-G solvation = -3048.954155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06396 -38.15761 -35.62800 -34.43438 -33.54001 -31.39918 -29.05597 -28.51801 -27.21430 -26.76398 -24.44657 -22.21916 -21.32565 -20.30685 -19.96911 -19.34836 -17.32716 -16.74756 -16.42976 -15.69409 -14.92560 -14.69593 -14.45410 -14.12969 -13.78772 -13.67879 -13.34550 -13.18444 -12.87091 -12.48216 -12.40775 -12.16609 -12.04606 -11.81111 -11.30946 -11.20348 -11.01815 -10.92515 -10.87821 -10.81490 -10.70818 -10.43135 -10.30684 -10.21697 -9.95628 -9.71007 -9.61838 -8.87983 -8.86915 -6.91125 -5.76600 -3.04716 2.71772 3.26884 3.43327 3.49392 3.51416 4.54527 4.61003 4.66732 4.76814 4.82842 4.87128 5.06044 5.18355 5.34829 5.44006 5.46814 5.49763 5.57233 5.57701 5.65254 5.67635 5.76746 5.79434 5.83598 5.84607 5.96095 5.99663 6.09947 6.21260 6.22675 6.26798 6.31742 6.40270 6.53361 6.58342 6.65847 6.78449 6.92965 7.60874 7.71325 8.32778 8.42643 9.54029 10.11986 10.47083 11.46404 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.004133 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.358155 B = 6773.470370 C = 7905.896063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.140 4.140 5 C 0.512 3.488 6 O -0.541 6.541 7 N -0.721 5.721 8 C 0.146 3.854 9 H 0.093 0.907 10 C -0.131 4.131 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.102 4.102 14 H 0.079 0.921 15 C 0.162 3.838 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.020 0.980 42 H 0.017 0.983 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.114 -3.531 -15.314 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.419 6.419 7 N -0.371 5.371 8 C 0.041 3.959 9 H 0.111 0.889 10 C -0.170 4.170 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.121 4.121 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.375 5.375 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.664 -3.018 -15.940 19.981 hybrid contribution 0.031 0.230 1.279 1.300 sum -11.632 -2.789 -14.661 18.922 Atomic orbital electron populations 1.21870 0.95145 1.01585 1.01943 1.20842 0.94859 0.96990 0.97160 1.21969 1.03353 0.94917 1.00922 1.21799 0.92299 1.02845 1.01012 1.20692 0.90071 0.77109 0.82248 1.90649 1.70437 1.47503 1.33283 1.46130 1.07842 1.59589 1.23554 1.21896 0.79072 0.98632 0.96263 0.88926 1.22496 0.97972 0.97059 0.99455 1.22126 0.97276 0.99204 0.97522 1.22268 0.96672 0.98345 0.97569 1.22559 0.96993 0.98701 0.93854 0.90271 1.20629 0.96068 0.92703 0.87163 1.42339 1.76409 1.06993 1.11773 1.19284 1.34610 0.88049 0.94920 0.91224 1.24726 1.02149 0.96382 0.97784 1.69669 1.50677 1.18091 1.19835 0.86128 0.77609 0.81658 0.80884 1.20574 1.21891 1.21872 0.92608 0.92511 0.92789 0.90579 0.93321 0.90542 0.93129 0.89132 0.88850 0.76527 0.91691 0.91880 0.92003 0.92013 0.90790 0.91171 0.96260 0.96497 0.78258 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.08 -0.76 2.57 -90.62 -0.23 -1.00 16 3 C -0.15 -1.66 8.93 37.15 0.33 -1.33 16 4 C -0.14 -1.29 5.18 -27.88 -0.14 -1.44 16 5 C 0.51 6.50 7.54 -10.98 -0.08 6.41 16 6 O -0.54 -8.68 13.68 5.56 0.08 -8.61 16 7 N -0.72 -8.75 5.12 -52.16 -0.27 -9.02 16 8 C 0.15 2.04 2.61 -66.23 -0.17 1.86 16 9 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 10 C -0.13 -1.64 6.53 -25.61 -0.17 -1.81 16 11 C -0.12 -1.53 6.80 -25.62 -0.17 -1.70 16 12 C -0.11 -1.68 5.97 -25.07 -0.15 -1.83 16 13 C -0.10 -1.59 2.55 -88.59 -0.23 -1.82 16 14 H 0.08 1.22 8.02 -51.93 -0.42 0.81 16 15 C 0.16 3.25 5.70 -4.04 -0.02 3.23 16 16 N -0.73 -18.34 5.45 -59.91 -0.33 -18.66 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 1.02 5.95 -51.93 -0.31 0.71 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 4.08 8.53 -40.82 -0.35 3.74 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.74 8.04 -51.93 -0.42 0.32 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.13 8.02 -51.93 -0.42 0.72 16 41 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.38 10.02 7.53 -40.82 -0.31 9.71 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -31.62 350.80 -8.54 -40.16 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.06 Total: 8.29 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.95 Total: -7.52 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.13 Total: -55.07 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.62 -8.54 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482667403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.129 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds