Wall clock time and date at job start Mon Mar 30 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47427 * 2 1 4 4 C 1.53004 * 109.46861 * 119.99836 * 2 1 3 5 5 C 1.50706 * 109.46875 * 174.99931 * 4 2 1 6 6 O 1.21277 * 120.00085 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99657 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99783 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.53931 * 36.15396 * 8 7 5 10 10 C 1.54270 * 110.48451 * 273.54326 * 8 7 5 11 11 C 1.53869 * 106.63967 * 217.73604 * 10 8 7 12 12 C 1.54268 * 106.60115 * 359.97438 * 11 10 8 13 13 C 1.54895 * 104.19476 * 23.60777 * 12 11 10 14 14 H 1.09001 * 110.75082 * 80.37254 * 13 12 11 15 15 C 1.53000 * 110.75739 * 203.74412 * 13 12 11 16 16 N 1.46495 * 109.46909 * 293.54897 * 15 13 12 17 17 C 1.36943 * 119.99732 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00038 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99785 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47393 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47245 * 120.00004 * 21 19 17 24 24 H 1.48507 * 109.47282 * 239.99975 * 21 19 17 25 25 H 1.09002 * 109.47142 * 300.00217 * 1 2 3 26 26 H 1.09007 * 109.47012 * 59.99992 * 1 2 3 27 27 H 1.08994 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47142 * 239.99783 * 2 1 3 29 29 H 1.09002 * 109.47136 * 59.99779 * 3 2 1 30 30 H 1.09005 * 109.47522 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47031 * 299.99996 * 3 2 1 32 32 H 1.08996 * 109.47124 * 55.00469 * 4 2 1 33 33 H 1.08994 * 109.47475 * 294.99560 * 4 2 1 34 34 H 0.97000 * 120.00550 * 359.97438 * 7 5 4 35 35 H 1.09002 * 110.03399 * 98.42602 * 10 8 7 36 36 H 1.08995 * 110.02943 * 337.04502 * 10 8 7 37 37 H 1.08999 * 110.03405 * 119.26051 * 11 10 8 38 38 H 1.09001 * 110.03705 * 240.64196 * 11 10 8 39 39 H 1.08997 * 110.48788 * 142.28685 * 12 11 10 40 40 H 1.09000 * 110.48806 * 264.79985 * 12 11 10 41 41 H 1.09001 * 109.47000 * 53.54501 * 15 13 12 42 42 H 1.09001 * 109.47066 * 173.54524 * 15 13 12 43 43 H 0.97001 * 120.00680 * 359.97438 * 16 15 13 44 44 H 0.97005 * 119.99636 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2404 7 7 4.2148 -1.4322 2.1891 8 6 5.6749 -1.5369 2.1307 9 1 6.1044 -0.6445 1.6755 10 6 6.0949 -2.7979 1.3476 11 6 7.3331 -3.3678 2.0615 12 6 7.6237 -2.4330 3.2538 13 6 6.2610 -1.7580 3.5481 14 1 5.6204 -2.4193 4.1314 15 6 6.4616 -0.4222 4.2666 16 7 7.0196 -0.6637 5.5994 17 6 7.2852 0.3908 6.4319 18 1 7.0835 1.4004 6.1056 19 6 7.8134 0.1620 7.6950 20 7 8.0587 -1.0685 8.0927 21 14 8.1763 1.6003 8.8302 22 1 7.8148 2.8705 8.1510 23 1 7.3803 1.4607 10.0761 24 1 9.6229 1.6135 9.1658 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.7324 -1.7961 2.9480 35 1 6.3449 -2.5335 0.3202 36 1 5.2876 -3.5302 1.3585 37 1 7.1266 -4.3764 2.4195 38 1 8.1840 -3.3807 1.3803 39 1 7.9587 -3.0084 4.1168 40 1 8.3701 -1.6871 2.9807 41 1 7.1483 0.1997 3.6924 42 1 5.5025 0.0872 4.3610 43 1 7.2004 -1.5705 5.8926 44 1 8.4275 -1.2283 8.9755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482667403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:48 Heat of formation + Delta-G solvation = -81.204197 kcal Electronic energy + Delta-G solvation = -20897.245392 eV Core-core repulsion = 17847.427617 eV Total energy + Delta-G solvation = -3049.817774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12151 -39.33584 -36.55562 -36.18138 -34.67379 -33.31327 -30.27381 -29.85091 -27.93116 -27.79140 -26.26710 -23.97614 -22.28700 -21.50009 -20.93928 -20.44934 -19.22173 -17.89119 -17.59369 -16.70182 -16.50526 -16.05784 -15.67576 -15.18365 -15.10833 -15.04642 -14.63292 -14.60002 -14.34466 -13.61257 -13.25412 -13.14708 -13.13809 -12.99782 -12.83619 -12.67161 -12.36601 -12.13884 -12.06560 -12.02723 -11.86023 -11.70457 -11.60990 -11.58382 -11.54415 -11.30552 -10.95321 -10.66035 -9.95843 -9.00506 -7.96336 -5.24730 1.46793 1.47367 1.57487 1.73391 2.29317 2.54860 3.36939 3.45519 3.66985 3.82366 3.88368 3.97355 4.06124 4.18261 4.38436 4.41701 4.48660 4.53956 4.57482 4.66600 4.72229 4.73232 4.75465 4.77479 4.87261 4.95504 5.02797 5.06770 5.11468 5.15185 5.23293 5.26216 5.29771 5.32104 5.46285 5.48358 5.50840 5.53813 5.67949 6.26349 6.65092 7.33287 7.35830 8.08024 8.33500 9.27070 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.004133 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.358155 B = 6773.470370 C = 7905.896063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.133 4.133 5 C 0.507 3.493 6 O -0.579 6.579 7 N -0.715 5.715 8 C 0.154 3.846 9 H 0.068 0.932 10 C -0.122 4.122 11 C -0.113 4.113 12 C -0.111 4.111 13 C -0.090 4.090 14 H 0.087 0.913 15 C 0.164 3.836 16 N -0.740 5.740 17 C -0.247 4.247 18 H 0.070 0.930 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.293 1.293 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.008 0.992 42 H 0.016 0.984 43 H 0.377 0.623 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 -3.983 -15.600 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.173 4.173 5 C 0.296 3.704 6 O -0.459 6.459 7 N -0.367 5.367 8 C 0.048 3.952 9 H 0.086 0.914 10 C -0.161 4.161 11 C -0.151 4.151 12 C -0.150 4.150 13 C -0.109 4.109 14 H 0.106 0.894 15 C 0.037 3.963 16 N -0.383 5.383 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.220 1.220 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.209 0.791 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.270 -3.465 -16.241 21.257 hybrid contribution 0.527 0.416 1.319 1.481 sum -12.743 -3.050 -14.921 19.858 Atomic orbital electron populations 1.21817 0.93078 1.02625 1.02429 1.20838 0.96456 0.95805 0.96762 1.21943 1.01309 0.96294 1.01560 1.21850 0.89426 1.04654 1.01345 1.21354 0.91519 0.76079 0.81483 1.90643 1.71492 1.48981 1.34802 1.46082 1.07046 1.59503 1.24044 1.21646 0.80203 0.98540 0.94812 0.91362 1.22421 0.98415 0.96380 0.98867 1.22065 0.97655 0.99083 0.96269 1.22223 0.95893 0.98431 0.98405 1.22398 0.97790 0.96307 0.94450 0.89437 1.20713 0.95073 0.95205 0.85307 1.42487 1.76567 1.06034 1.13164 1.19627 1.33942 0.88810 0.95528 0.91226 1.25514 1.02643 0.98881 0.99352 1.69808 1.51802 1.19944 1.20096 0.85108 0.77027 0.79080 0.78746 1.19420 1.21711 1.21968 0.91936 0.92260 0.91471 0.92039 0.92684 0.93619 0.92522 0.86332 0.87468 0.75132 0.91963 0.90338 0.90390 0.90946 0.92147 0.92730 0.97369 0.96604 0.79083 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 71.98 0.66 -1.09 16 2 C -0.08 -1.41 2.57 -10.79 -0.03 -1.43 16 3 C -0.15 -3.23 8.93 71.98 0.64 -2.59 16 4 C -0.13 -2.17 5.18 29.85 0.15 -2.01 16 5 C 0.51 12.35 7.54 87.66 0.66 13.01 16 6 O -0.58 -18.69 13.68 -3.02 -0.04 -18.74 16 7 N -0.72 -16.40 5.12 -437.32 -2.24 -18.64 16 8 C 0.15 4.18 2.61 46.09 0.12 4.30 16 9 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 10 C -0.12 -2.84 6.53 31.32 0.20 -2.64 16 11 C -0.11 -2.60 6.80 31.32 0.21 -2.39 16 12 C -0.11 -3.36 5.97 31.67 0.19 -3.17 16 13 C -0.09 -2.79 2.55 -9.48 -0.02 -2.81 16 14 H 0.09 2.59 8.02 -2.39 -0.02 2.58 16 15 C 0.16 6.64 5.70 86.38 0.49 7.14 16 16 N -0.74 -37.55 5.45 -343.46 -1.87 -39.42 16 17 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 18 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 21 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 1.27 7.96 -2.39 -0.02 1.25 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 1.25 5.95 -2.38 -0.01 1.23 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 7.53 8.53 -92.71 -0.79 6.73 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.05 1.79 8.02 -2.39 -0.02 1.78 16 41 H 0.01 0.36 8.10 -2.39 -0.02 0.34 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.38 19.99 7.53 -92.71 -0.70 19.29 16 44 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -68.33 350.80 2.23 -66.10 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.52 Total: 31.20 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.59 Total: -10.48 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.83 Total: -116.40 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.04 Total: -18.74 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -68.33 2.23 -66.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482667403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.101 kcal (2) G-P(sol) polarization free energy of solvation -68.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds