Wall clock time and date at job start Mon Mar 30 2020 00:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46775 * 2 1 4 4 C 1.52993 * 109.47209 * 119.99555 * 2 1 3 5 5 C 1.50704 * 109.47370 * 174.99935 * 4 2 1 6 6 O 1.21283 * 119.99588 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00452 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00195 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.05661 * 326.42121 * 8 7 5 10 10 C 1.54269 * 110.03287 * 87.83602 * 8 7 5 11 11 C 1.54882 * 104.19831 * 142.89526 * 10 8 7 12 12 C 1.54888 * 102.74855 * 322.05471 * 11 10 8 13 13 C 1.53873 * 110.03251 * 205.00055 * 8 7 5 14 14 H 1.09002 * 110.03070 * 121.43122 * 13 8 7 15 15 C 1.53000 * 110.03127 * 0.04834 * 13 8 7 16 16 N 1.46499 * 109.47049 * 175.69007 * 15 13 8 17 17 C 1.36938 * 120.00311 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99802 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47394 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47136 * 119.99832 * 21 19 17 24 24 H 1.48499 * 109.47241 * 239.99812 * 21 19 17 25 25 H 1.08992 * 109.47405 * 299.99670 * 1 2 3 26 26 H 1.09000 * 109.47485 * 60.00465 * 1 2 3 27 27 H 1.09007 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47519 * 240.00174 * 2 1 3 29 29 H 1.08992 * 109.46885 * 60.00012 * 3 2 1 30 30 H 1.08999 * 109.46693 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46734 * 299.99994 * 3 2 1 32 32 H 1.09002 * 109.47112 * 55.00824 * 4 2 1 33 33 H 1.08998 * 109.47463 * 295.00351 * 4 2 1 34 34 H 0.97001 * 119.99839 * 0.02562 * 7 5 4 35 35 H 1.09000 * 110.48429 * 261.57839 * 10 8 7 36 36 H 1.09001 * 110.48672 * 24.21332 * 10 8 7 37 37 H 1.08998 * 110.75605 * 80.36842 * 11 10 8 38 38 H 1.09002 * 110.75549 * 203.56377 * 11 10 8 39 39 H 1.09001 * 110.49097 * 279.26569 * 12 11 10 40 40 H 1.08999 * 110.48858 * 156.61808 * 12 11 10 41 41 H 1.09000 * 109.47367 * 295.68823 * 15 13 8 42 42 H 1.09003 * 109.47127 * 55.69353 * 15 13 8 43 43 H 0.97003 * 120.00234 * 359.97438 * 16 15 13 44 44 H 0.97007 * 119.99362 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5419 -0.8293 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2149 -1.4320 2.1890 8 6 5.6750 -1.5366 2.1306 9 1 6.0002 -1.6547 1.0970 10 6 6.3201 -0.2782 2.7471 11 6 7.5706 -0.8156 3.4863 12 6 7.0701 -2.1592 4.0722 13 6 6.1519 -2.7326 2.9731 14 1 6.7085 -3.4311 2.3484 15 6 4.9517 -3.4388 3.6071 16 7 5.4093 -4.6335 4.3210 17 6 4.5055 -5.4308 4.9711 18 1 3.4555 -5.1787 4.9579 19 6 4.9391 -6.5626 5.6479 20 7 6.2189 -6.8695 5.6643 21 14 3.7063 -7.6497 6.5353 22 1 2.3411 -7.0906 6.3657 23 1 3.7538 -9.0200 5.9646 24 1 4.0438 -7.7034 7.9804 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6055 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1369 34 1 3.7325 -1.7965 2.9475 35 1 6.6111 0.4233 1.9652 36 1 5.6355 0.1958 3.4505 37 1 8.3910 -0.9805 2.7878 38 1 7.8727 -0.1332 4.2807 39 1 6.5066 -1.9890 4.9897 40 1 7.9086 -2.8306 4.2574 41 1 4.4607 -2.7630 4.3073 42 1 4.2474 -3.7289 2.8275 43 1 6.3524 -4.8602 4.3325 44 1 6.5219 -7.6602 6.1376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482667406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:51 Heat of formation + Delta-G solvation = -52.426024 kcal Electronic energy + Delta-G solvation = -21124.187834 eV Core-core repulsion = 18075.617975 eV Total energy + Delta-G solvation = -3048.569859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14432 -38.23578 -35.56883 -34.36541 -33.52156 -31.42368 -29.01835 -28.51664 -27.19298 -26.66385 -24.55658 -22.49026 -21.35421 -20.45074 -19.81840 -18.96763 -17.42733 -16.92414 -15.99026 -15.48680 -15.16862 -14.71064 -14.50195 -14.26025 -13.86101 -13.66658 -13.44732 -13.05931 -12.88391 -12.57382 -12.35845 -12.10740 -11.98941 -11.56878 -11.33929 -11.18793 -10.92857 -10.89680 -10.83294 -10.79525 -10.76955 -10.48101 -10.38686 -10.27965 -9.95532 -9.73083 -9.55122 -8.95451 -8.79603 -6.96305 -5.80284 -3.09198 2.77754 3.35322 3.40551 3.46010 3.48356 4.52620 4.66075 4.70711 4.80544 4.84146 4.87808 5.12867 5.23824 5.40582 5.47330 5.50512 5.52492 5.54931 5.58441 5.66040 5.67990 5.78144 5.79060 5.87003 5.88591 5.94363 6.02603 6.06260 6.19512 6.21800 6.26562 6.30661 6.38290 6.45221 6.58595 6.64077 6.76618 6.83183 7.65188 7.68861 8.37939 8.39257 9.49884 10.07461 10.42075 11.42550 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.004611 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.468051 B = 6070.754353 C = 7489.745671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.141 4.141 5 C 0.511 3.489 6 O -0.546 6.546 7 N -0.722 5.722 8 C 0.148 3.852 9 H 0.087 0.913 10 C -0.131 4.131 11 C -0.125 4.125 12 C -0.111 4.111 13 C -0.108 4.108 14 H 0.081 0.919 15 C 0.158 3.842 16 N -0.729 5.729 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.406 0.594 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 15.384 -7.884 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.180 4.180 5 C 0.298 3.702 6 O -0.424 6.424 7 N -0.376 5.376 8 C 0.043 3.957 9 H 0.106 0.894 10 C -0.169 4.169 11 C -0.163 4.163 12 C -0.149 4.149 13 C -0.127 4.127 14 H 0.099 0.901 15 C 0.030 3.970 16 N -0.373 5.373 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.238 15.630 -8.491 18.543 hybrid contribution -0.582 -1.026 0.977 1.532 sum -5.820 14.604 -7.513 17.424 Atomic orbital electron populations 1.21870 0.95136 1.01776 1.01790 1.20840 0.94887 0.96815 0.97319 1.21957 1.03220 0.95050 1.00750 1.21798 0.92379 1.03130 1.00742 1.20712 0.90094 0.77243 0.82138 1.90630 1.70527 1.47768 1.33520 1.46465 1.07947 1.59209 1.23972 1.21617 0.79163 0.94574 1.00347 0.89446 1.22750 0.97355 0.97278 0.99547 1.22489 0.97080 0.97326 0.99390 1.22350 0.99052 0.95488 0.97994 1.22217 0.97952 0.95741 0.96828 0.90094 1.20677 0.93612 0.89059 0.93626 1.42341 1.07824 1.25445 1.61724 1.19255 0.90027 1.03242 1.24732 0.91188 1.24739 0.96044 0.98786 1.01303 1.69672 1.12853 1.27989 1.47495 0.86130 0.80239 0.80586 0.79292 1.20572 1.21853 1.21846 0.92700 0.92554 0.92614 0.90489 0.93503 0.90624 0.93190 0.88819 0.89050 0.75533 0.91630 0.91437 0.91625 0.91697 0.91031 0.91238 0.96537 0.96134 0.78151 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.16 0.34 -0.87 16 2 C -0.08 -0.81 2.57 -90.62 -0.23 -1.05 16 3 C -0.15 -1.59 8.93 37.16 0.33 -1.26 16 4 C -0.14 -1.45 5.17 -27.88 -0.14 -1.59 16 5 C 0.51 6.89 7.54 -10.98 -0.08 6.80 16 6 O -0.55 -8.90 13.62 5.55 0.08 -8.83 16 7 N -0.72 -9.64 4.40 -52.72 -0.23 -9.87 16 8 C 0.15 2.10 3.23 -66.81 -0.22 1.88 16 9 H 0.09 1.33 7.57 -51.93 -0.39 0.94 16 10 C -0.13 -1.66 6.53 -25.07 -0.16 -1.82 16 11 C -0.12 -1.54 6.91 -24.74 -0.17 -1.71 16 12 C -0.11 -1.67 6.05 -25.07 -0.15 -1.82 16 13 C -0.11 -1.71 2.97 -89.50 -0.27 -1.98 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 15 C 0.16 3.00 4.18 -4.04 -0.02 2.98 16 16 N -0.73 -17.89 5.44 -59.91 -0.33 -18.21 16 17 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.97 5.95 -51.93 -0.31 0.66 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 5.18 5.89 -40.82 -0.24 4.94 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.16 7.77 -51.93 -0.40 0.75 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.31 7.08 -51.93 -0.37 -0.06 16 42 H 0.02 0.40 7.47 -51.93 -0.39 0.01 16 43 H 0.38 10.00 7.53 -40.82 -0.31 9.69 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -30.74 345.27 -8.45 -39.20 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.86 Total: 10.20 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.02 Total: -7.64 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.17 Total: -55.17 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.83 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.74 -8.45 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482667406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.228 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds