Wall clock time and date at job start Mon Mar 30 2020 00:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46775 * 2 1 4 4 C 1.52993 * 109.47209 * 119.99555 * 2 1 3 5 5 C 1.50704 * 109.47370 * 174.99935 * 4 2 1 6 6 O 1.21283 * 119.99588 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00452 * 180.02562 * 5 4 2 8 8 C 1.46498 * 120.00195 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.05661 * 326.42121 * 8 7 5 10 10 C 1.54269 * 110.03287 * 87.83602 * 8 7 5 11 11 C 1.54882 * 104.19831 * 142.89526 * 10 8 7 12 12 C 1.54888 * 102.74855 * 322.05471 * 11 10 8 13 13 C 1.53873 * 110.03251 * 205.00055 * 8 7 5 14 14 H 1.09002 * 110.03070 * 121.43122 * 13 8 7 15 15 C 1.53000 * 110.03127 * 0.04834 * 13 8 7 16 16 N 1.46499 * 109.47049 * 175.69007 * 15 13 8 17 17 C 1.36938 * 120.00311 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99802 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47394 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47136 * 119.99832 * 21 19 17 24 24 H 1.48499 * 109.47241 * 239.99812 * 21 19 17 25 25 H 1.08992 * 109.47405 * 299.99670 * 1 2 3 26 26 H 1.09000 * 109.47485 * 60.00465 * 1 2 3 27 27 H 1.09007 * 109.46749 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47519 * 240.00174 * 2 1 3 29 29 H 1.08992 * 109.46885 * 60.00012 * 3 2 1 30 30 H 1.08999 * 109.46693 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46734 * 299.99994 * 3 2 1 32 32 H 1.09002 * 109.47112 * 55.00824 * 4 2 1 33 33 H 1.08998 * 109.47463 * 295.00351 * 4 2 1 34 34 H 0.97001 * 119.99839 * 0.02562 * 7 5 4 35 35 H 1.09000 * 110.48429 * 261.57839 * 10 8 7 36 36 H 1.09001 * 110.48672 * 24.21332 * 10 8 7 37 37 H 1.08998 * 110.75605 * 80.36842 * 11 10 8 38 38 H 1.09002 * 110.75549 * 203.56377 * 11 10 8 39 39 H 1.09001 * 110.49097 * 279.26569 * 12 11 10 40 40 H 1.08999 * 110.48858 * 156.61808 * 12 11 10 41 41 H 1.09000 * 109.47367 * 295.68823 * 15 13 8 42 42 H 1.09003 * 109.47127 * 55.69353 * 15 13 8 43 43 H 0.97003 * 120.00234 * 359.97438 * 16 15 13 44 44 H 0.97007 * 119.99362 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5419 -0.8293 1.1889 6 8 4.1450 -0.3739 0.2403 7 7 4.2149 -1.4320 2.1890 8 6 5.6750 -1.5366 2.1306 9 1 6.0002 -1.6547 1.0970 10 6 6.3201 -0.2782 2.7471 11 6 7.5706 -0.8156 3.4863 12 6 7.0701 -2.1592 4.0722 13 6 6.1519 -2.7326 2.9731 14 1 6.7085 -3.4311 2.3484 15 6 4.9517 -3.4388 3.6071 16 7 5.4093 -4.6335 4.3210 17 6 4.5055 -5.4308 4.9711 18 1 3.4555 -5.1787 4.9579 19 6 4.9391 -6.5626 5.6479 20 7 6.2189 -6.8695 5.6643 21 14 3.7063 -7.6497 6.5353 22 1 2.3411 -7.0906 6.3657 23 1 3.7538 -9.0200 5.9646 24 1 4.0438 -7.7034 7.9804 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6055 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1369 34 1 3.7325 -1.7965 2.9475 35 1 6.6111 0.4233 1.9652 36 1 5.6355 0.1958 3.4505 37 1 8.3910 -0.9805 2.7878 38 1 7.8727 -0.1332 4.2807 39 1 6.5066 -1.9890 4.9897 40 1 7.9086 -2.8306 4.2574 41 1 4.4607 -2.7630 4.3073 42 1 4.2474 -3.7289 2.8275 43 1 6.3524 -4.8602 4.3325 44 1 6.5219 -7.6602 6.1376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482667406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:51 Heat of formation + Delta-G solvation = -70.950825 kcal Electronic energy + Delta-G solvation = -21124.991129 eV Core-core repulsion = 18075.617975 eV Total energy + Delta-G solvation = -3049.373155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26806 -39.41256 -36.49998 -36.13198 -34.65019 -33.29062 -30.24999 -29.84471 -27.92201 -27.69976 -26.30986 -24.20701 -22.36471 -21.55979 -20.73473 -20.29771 -19.17915 -18.19482 -17.14483 -16.62047 -16.49893 -16.26108 -15.64778 -15.34965 -15.24494 -14.94010 -14.71677 -14.64267 -14.25407 -13.53662 -13.38605 -13.10440 -13.02901 -12.83542 -12.74379 -12.66360 -12.34721 -12.11569 -12.02445 -11.93177 -11.76725 -11.71973 -11.70959 -11.55065 -11.53573 -11.44136 -10.93185 -10.64496 -9.95734 -8.98747 -7.94034 -5.22689 1.48964 1.49405 1.59239 1.72498 2.30129 2.57051 3.39828 3.47802 3.69005 3.82619 3.86238 3.97026 4.06362 4.18954 4.38696 4.40395 4.50901 4.53014 4.56821 4.68635 4.70187 4.74269 4.77392 4.78727 4.87826 4.93054 4.99771 5.06988 5.08498 5.15148 5.22324 5.28264 5.31884 5.36387 5.47585 5.48159 5.51699 5.54299 5.66268 6.27940 6.61647 7.32862 7.34840 8.10446 8.33237 9.29852 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.004611 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.468051 B = 6070.754353 C = 7489.745671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.577 6.577 7 N -0.721 5.721 8 C 0.154 3.846 9 H 0.075 0.925 10 C -0.123 4.123 11 C -0.114 4.114 12 C -0.109 4.109 13 C -0.101 4.101 14 H 0.068 0.932 15 C 0.160 3.840 16 N -0.743 5.743 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.294 1.294 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.410 0.590 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.022 0.978 43 H 0.374 0.626 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 16.584 -7.586 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 C -0.207 4.207 4 C -0.176 4.176 5 C 0.296 3.704 6 O -0.458 6.458 7 N -0.374 5.374 8 C 0.048 3.952 9 H 0.093 0.907 10 C -0.161 4.161 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.086 0.914 15 C 0.034 3.966 16 N -0.385 5.385 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.221 1.221 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.206 0.794 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.966 16.865 -8.204 20.006 hybrid contribution -0.055 -1.351 0.822 1.582 sum -7.021 15.514 -7.382 18.560 Atomic orbital electron populations 1.21824 0.93248 1.02361 1.02614 1.20836 0.96368 0.96298 0.96409 1.21909 1.01469 0.95576 1.01731 1.21860 0.89749 1.04246 1.01737 1.21295 0.91395 0.76344 0.81350 1.90624 1.71448 1.49040 1.34639 1.46453 1.07577 1.59204 1.24202 1.21488 0.79965 0.94470 0.99298 0.90665 1.22685 0.97390 0.96426 0.99614 1.22443 0.97085 0.95795 0.99849 1.22283 0.98312 0.96827 0.97279 1.22106 0.96897 0.95996 0.97005 0.91382 1.20812 0.94836 0.87595 0.93371 1.42558 1.07049 1.26845 1.62058 1.19693 0.90842 1.03208 1.23715 0.90263 1.25549 0.97708 1.00567 1.02927 1.69827 1.14750 1.28521 1.48972 0.85099 0.78875 0.78361 0.77579 1.18748 1.22371 1.22147 0.91581 0.92056 0.92163 0.92516 0.92207 0.93227 0.92551 0.87612 0.86863 0.75089 0.91243 0.90886 0.90751 0.89972 0.92112 0.92472 0.95188 0.96061 0.79444 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.33 16 2 C -0.08 -1.51 2.57 -10.79 -0.03 -1.54 16 3 C -0.15 -2.93 8.93 71.98 0.64 -2.29 16 4 C -0.14 -2.53 5.17 29.85 0.15 -2.38 16 5 C 0.51 13.12 7.54 87.66 0.66 13.78 16 6 O -0.58 -18.68 13.62 -3.04 -0.04 -18.72 16 7 N -0.72 -18.31 4.40 -439.10 -1.93 -20.24 16 8 C 0.15 4.21 3.23 45.72 0.15 4.36 16 9 H 0.08 2.28 7.57 -2.39 -0.02 2.26 16 10 C -0.12 -2.90 6.53 31.67 0.21 -2.69 16 11 C -0.11 -2.60 6.91 31.88 0.22 -2.38 16 12 C -0.11 -3.21 6.05 31.67 0.19 -3.02 16 13 C -0.10 -3.16 2.97 -10.07 -0.03 -3.19 16 14 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 15 C 0.16 5.97 4.18 86.38 0.36 6.33 16 16 N -0.74 -36.48 5.44 -343.45 -1.87 -38.35 16 17 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 18 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 20 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 21 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 1.29 7.96 -2.39 -0.02 1.27 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.24 5.95 -2.39 -0.01 1.23 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.41 9.73 5.89 -92.71 -0.55 9.18 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.92 7.77 -2.39 -0.02 1.90 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 1.07 7.08 -2.39 -0.02 1.05 16 42 H 0.02 0.81 7.47 -2.39 -0.02 0.79 16 43 H 0.37 19.80 7.53 -92.71 -0.70 19.10 16 44 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -65.66 345.27 2.69 -62.97 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.27 Total: 36.01 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.50 Total: -10.45 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -3.52 Total: -117.05 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.04 Total: -18.72 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.66 2.69 -62.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482667406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.981 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds