Wall clock time and date at job start Mon Mar 30 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47186 * 2 1 4 4 C 1.52992 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47135 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99705 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99866 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99936 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45809 * 324.97299 * 8 7 5 10 10 C 1.53044 * 109.44697 * 84.93611 * 8 7 5 11 11 C 1.53193 * 109.31425 * 58.65459 * 10 8 7 12 12 N 1.46923 * 108.77736 * 54.62991 * 11 10 8 13 13 C 1.36936 * 120.62911 * 126.41715 * 12 11 10 14 14 H 1.08000 * 119.99853 * 209.01480 * 13 12 11 15 15 C 1.38808 * 119.99903 * 29.01379 * 13 12 11 16 16 N 1.31615 * 119.99919 * 15.01900 * 15 13 12 17 17 Si 1.86803 * 119.99890 * 195.01100 * 15 13 12 18 18 H 1.48502 * 109.46880 * 60.00728 * 17 15 13 19 19 H 1.48501 * 109.47157 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47242 * 300.00464 * 17 15 13 21 21 C 1.46928 * 118.73998 * 306.39739 * 12 11 10 22 22 H 1.09008 * 109.58347 * 293.67965 * 21 12 11 23 23 C 1.52999 * 109.58783 * 173.39536 * 21 12 11 24 24 C 1.53035 * 109.46394 * 204.99796 * 8 7 5 25 25 H 1.09001 * 109.47092 * 300.00039 * 1 2 3 26 26 H 1.08996 * 109.46735 * 60.00033 * 1 2 3 27 27 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47092 * 239.99961 * 2 1 3 29 29 H 1.09005 * 109.47314 * 120.00094 * 2 1 3 30 30 H 1.09000 * 109.46236 * 60.00117 * 3 2 1 31 31 H 1.08995 * 109.47032 * 300.00146 * 3 2 1 32 32 H 1.09006 * 109.47372 * 60.00259 * 4 3 2 33 33 H 1.09003 * 109.47433 * 300.00711 * 4 3 2 34 34 H 0.97001 * 120.00218 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.50107 * 298.69374 * 10 8 7 36 36 H 1.09005 * 109.49337 * 178.60248 * 10 8 7 37 37 H 1.09005 * 109.57989 * 294.84139 * 11 10 8 38 38 H 1.08990 * 109.58487 * 174.42306 * 11 10 8 39 39 H 0.97007 * 119.99487 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.46718 * 59.99936 * 23 21 12 41 41 H 1.08996 * 109.47004 * 179.97438 * 23 21 12 42 42 H 1.08996 * 109.46731 * 299.99800 * 23 21 12 43 43 H 1.08996 * 109.50179 * 181.40568 * 24 8 7 44 44 H 1.09001 * 109.49953 * 61.31012 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 8 3.2842 3.7851 0.0008 7 7 5.3974 3.1096 0.0014 8 6 5.8858 4.4908 0.0014 9 1 5.2134 5.1137 -0.5885 10 6 5.9354 5.0136 1.4389 11 6 6.8541 4.1155 2.2733 12 7 8.1648 4.0371 1.6141 13 6 9.3107 4.3355 2.3019 14 1 10.1678 4.7311 1.7773 15 6 9.3705 4.1296 3.6733 16 7 8.4614 3.3860 4.2674 17 14 10.7414 4.9076 4.6757 18 1 10.6787 6.3848 4.5373 19 1 10.5815 4.5367 6.1047 20 1 12.0541 4.4193 4.1819 21 6 8.2228 3.6320 0.2029 22 1 7.9042 2.5939 0.1074 23 6 9.6552 3.7786 -0.3144 24 6 7.2887 4.5356 -0.6082 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 6.0278 2.3723 0.0014 35 1 4.9321 5.0035 1.8647 36 1 6.3222 6.0328 1.4422 37 1 6.4215 3.1177 2.3463 38 1 6.9715 4.5390 3.2707 39 1 8.5034 3.2418 5.2257 40 1 10.3200 3.1445 0.2722 41 1 9.6960 3.4772 -1.3611 42 1 9.9699 4.8181 -0.2227 43 1 7.6627 5.5591 -0.5857 44 1 7.2487 4.1851 -1.6395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484967535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:16 Heat of formation + Delta-G solvation = -44.038272 kcal Electronic energy + Delta-G solvation = -21517.872295 eV Core-core repulsion = 18469.666156 eV Total energy + Delta-G solvation = -3048.206139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.74395 -37.74299 -35.35665 -34.20143 -32.35008 -31.45983 -30.37046 -29.36348 -26.40745 -25.14500 -24.47608 -22.04055 -21.31457 -20.63336 -20.20887 -18.58515 -16.75564 -16.38223 -15.93261 -15.32850 -15.03919 -14.56937 -14.02434 -13.88967 -13.72829 -13.64929 -13.21845 -13.05953 -12.55174 -12.34298 -12.32943 -11.84797 -11.46147 -11.34306 -11.20905 -11.18159 -11.03726 -10.98788 -10.69001 -10.62186 -10.61027 -10.41070 -10.13970 -10.07816 -9.66611 -9.43955 -9.28935 -8.53936 -8.45165 -6.63950 -5.77983 -3.22094 3.00670 3.37413 3.43810 3.44527 3.59955 4.48304 4.81805 4.88660 4.89902 5.20763 5.28371 5.32699 5.36352 5.42778 5.49474 5.63622 5.67284 5.69391 5.76266 5.80789 5.86512 6.01639 6.04191 6.11871 6.22425 6.25861 6.31121 6.34777 6.39511 6.45013 6.59008 6.65909 6.79965 6.96822 7.04355 7.07177 7.39751 7.69690 7.81280 7.94010 8.46062 8.61862 9.21833 9.85447 10.41905 11.30054 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.004437 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.069225 B = 6309.690921 C = 6820.621397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.143 4.143 5 C 0.510 3.490 6 O -0.553 6.553 7 N -0.715 5.715 8 C 0.153 3.847 9 H 0.070 0.930 10 C -0.154 4.154 11 C 0.176 3.824 12 N -0.587 5.587 13 C -0.251 4.251 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.169 3.831 22 H 0.020 0.980 23 C -0.137 4.137 24 C -0.138 4.138 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.086 0.914 39 H 0.253 0.747 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 -4.952 -9.733 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.183 4.183 5 C 0.297 3.703 6 O -0.432 6.432 7 N -0.366 5.366 8 C 0.049 3.951 9 H 0.088 0.912 10 C -0.194 4.194 11 C 0.050 3.950 12 N -0.311 5.311 13 C -0.381 4.381 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.210 1.210 21 C 0.062 3.938 22 H 0.037 0.963 23 C -0.195 4.195 24 C -0.178 4.178 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.236 0.764 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.970 -4.331 -9.545 13.796 hybrid contribution 1.049 0.008 0.683 1.252 sum -7.921 -4.323 -8.862 12.648 Atomic orbital electron populations 1.21758 0.95908 1.01316 1.01948 1.21561 0.95933 0.96883 1.01961 1.21342 0.93031 0.96248 1.03444 1.21700 0.97838 0.94490 1.04238 1.20642 0.82466 0.91439 0.75765 1.90653 1.55451 1.46603 1.50443 1.46192 1.06743 1.09517 1.74186 1.20855 0.94637 0.82046 0.97551 0.91164 1.22553 1.00286 1.00896 0.95634 1.20712 0.83002 0.95205 0.96032 1.44134 1.02815 1.78283 1.05841 1.19132 0.93116 1.35653 0.90194 0.91335 1.25069 0.98064 0.98325 0.98091 1.70004 1.36387 1.38752 1.09639 0.86400 0.81874 0.79328 0.79315 1.21077 1.21700 1.20956 1.20377 0.93251 0.93948 0.86255 0.96275 1.21809 0.97403 1.02066 0.98199 1.22355 0.94941 1.02294 0.98211 0.92659 0.92794 0.92946 0.92124 0.91918 0.91244 0.91458 0.89340 0.88904 0.76426 0.92884 0.91969 0.96462 0.89589 0.93674 0.91938 0.94330 0.92711 0.90788 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.10 -1.19 4.50 -26.73 -0.12 -1.31 16 4 C -0.14 -1.70 5.70 -27.89 -0.16 -1.86 16 5 C 0.51 8.17 7.79 -10.99 -0.09 8.09 16 6 O -0.55 -10.73 15.64 5.56 0.09 -10.64 16 7 N -0.71 -11.47 4.26 -53.77 -0.23 -11.70 16 8 C 0.15 2.69 2.78 -67.89 -0.19 2.51 16 9 H 0.07 1.26 7.58 -51.93 -0.39 0.86 16 10 C -0.15 -3.09 5.77 -26.61 -0.15 -3.25 16 11 C 0.18 4.14 5.03 -3.71 -0.02 4.12 16 12 N -0.59 -13.92 2.99 -164.78 -0.49 -14.41 16 13 C -0.25 -6.58 8.60 -15.06 -0.13 -6.71 16 14 H 0.07 1.75 6.21 -52.49 -0.33 1.42 16 15 C 0.00 0.08 4.96 -17.43 -0.09 0.00 16 16 N -0.90 -25.72 11.14 55.49 0.62 -25.10 16 17 Si 0.90 21.40 29.58 -169.99 -5.03 16.38 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.17 3.25 3.19 -67.60 -0.22 3.03 16 22 H 0.02 0.38 6.65 -51.92 -0.35 0.03 16 23 C -0.14 -2.45 7.94 37.16 0.30 -2.15 16 24 C -0.14 -2.31 5.07 -26.61 -0.13 -2.44 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 6.02 6.87 -40.82 -0.28 5.74 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 38 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -29.83 340.51 -8.59 -38.43 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.89 Total: 4.14 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.79 Total: -2.22 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.10 Total: -51.21 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.83 -8.59 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484967535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.610 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds