Wall clock time and date at job start Mon Mar 30 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47186 * 2 1 4 4 C 1.52992 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47135 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99705 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99866 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99936 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45809 * 324.97299 * 8 7 5 10 10 C 1.53044 * 109.44697 * 84.93611 * 8 7 5 11 11 C 1.53193 * 109.31425 * 58.65459 * 10 8 7 12 12 N 1.46923 * 108.77736 * 54.62991 * 11 10 8 13 13 C 1.36936 * 120.62911 * 126.41715 * 12 11 10 14 14 H 1.08000 * 119.99853 * 209.01480 * 13 12 11 15 15 C 1.38808 * 119.99903 * 29.01379 * 13 12 11 16 16 N 1.31615 * 119.99919 * 15.01900 * 15 13 12 17 17 Si 1.86803 * 119.99890 * 195.01100 * 15 13 12 18 18 H 1.48502 * 109.46880 * 60.00728 * 17 15 13 19 19 H 1.48501 * 109.47157 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47242 * 300.00464 * 17 15 13 21 21 C 1.46928 * 118.73998 * 306.39739 * 12 11 10 22 22 H 1.09008 * 109.58347 * 293.67965 * 21 12 11 23 23 C 1.52999 * 109.58783 * 173.39536 * 21 12 11 24 24 C 1.53035 * 109.46394 * 204.99796 * 8 7 5 25 25 H 1.09001 * 109.47092 * 300.00039 * 1 2 3 26 26 H 1.08996 * 109.46735 * 60.00033 * 1 2 3 27 27 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47092 * 239.99961 * 2 1 3 29 29 H 1.09005 * 109.47314 * 120.00094 * 2 1 3 30 30 H 1.09000 * 109.46236 * 60.00117 * 3 2 1 31 31 H 1.08995 * 109.47032 * 300.00146 * 3 2 1 32 32 H 1.09006 * 109.47372 * 60.00259 * 4 3 2 33 33 H 1.09003 * 109.47433 * 300.00711 * 4 3 2 34 34 H 0.97001 * 120.00218 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.50107 * 298.69374 * 10 8 7 36 36 H 1.09005 * 109.49337 * 178.60248 * 10 8 7 37 37 H 1.09005 * 109.57989 * 294.84139 * 11 10 8 38 38 H 1.08990 * 109.58487 * 174.42306 * 11 10 8 39 39 H 0.97007 * 119.99487 * 179.97438 * 16 15 13 40 40 H 1.09006 * 109.46718 * 59.99936 * 23 21 12 41 41 H 1.08996 * 109.47004 * 179.97438 * 23 21 12 42 42 H 1.08996 * 109.46731 * 299.99800 * 23 21 12 43 43 H 1.08996 * 109.50179 * 181.40568 * 24 8 7 44 44 H 1.09001 * 109.49953 * 61.31012 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 8 3.2842 3.7851 0.0008 7 7 5.3974 3.1096 0.0014 8 6 5.8858 4.4908 0.0014 9 1 5.2134 5.1137 -0.5885 10 6 5.9354 5.0136 1.4389 11 6 6.8541 4.1155 2.2733 12 7 8.1648 4.0371 1.6141 13 6 9.3107 4.3355 2.3019 14 1 10.1678 4.7311 1.7773 15 6 9.3705 4.1296 3.6733 16 7 8.4614 3.3860 4.2674 17 14 10.7414 4.9076 4.6757 18 1 10.6787 6.3848 4.5373 19 1 10.5815 4.5367 6.1047 20 1 12.0541 4.4193 4.1819 21 6 8.2228 3.6320 0.2029 22 1 7.9042 2.5939 0.1074 23 6 9.6552 3.7786 -0.3144 24 6 7.2887 4.5356 -0.6082 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 6.0278 2.3723 0.0014 35 1 4.9321 5.0035 1.8647 36 1 6.3222 6.0328 1.4422 37 1 6.4215 3.1177 2.3463 38 1 6.9715 4.5390 3.2707 39 1 8.5034 3.2418 5.2257 40 1 10.3200 3.1445 0.2722 41 1 9.6960 3.4772 -1.3611 42 1 9.9699 4.8181 -0.2227 43 1 7.6627 5.5591 -0.5857 44 1 7.2487 4.1851 -1.6395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484967535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:16 Heat of formation + Delta-G solvation = -61.324774 kcal Electronic energy + Delta-G solvation = -21518.621894 eV Core-core repulsion = 18469.666156 eV Total energy + Delta-G solvation = -3048.955738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12022 -39.26836 -36.31787 -35.76343 -34.08105 -32.94540 -31.76739 -30.73060 -27.99080 -26.84973 -25.57742 -23.74492 -22.41157 -22.07037 -21.39408 -20.18755 -18.24245 -17.97558 -17.11416 -16.89939 -16.53014 -15.93449 -15.55288 -15.51132 -15.09819 -14.73504 -14.56173 -14.47573 -14.09600 -13.61869 -13.33422 -13.19898 -13.18683 -12.81741 -12.65379 -12.49294 -12.31099 -12.20279 -12.17347 -12.03998 -11.97099 -11.83579 -11.69589 -11.43684 -11.39135 -10.98555 -10.75637 -10.49038 -9.95079 -8.58552 -7.81567 -5.26747 1.47423 1.50078 1.55487 1.74197 2.35797 2.53899 3.33811 3.62967 3.80411 3.96986 3.99863 4.06855 4.11699 4.21521 4.40109 4.44834 4.49301 4.61186 4.66400 4.69019 4.79425 4.80140 4.94565 4.96397 4.98633 5.01632 5.08256 5.12604 5.13486 5.18977 5.30409 5.41154 5.42225 5.51772 5.54881 5.57677 5.66419 5.74061 5.78212 6.45353 6.66628 7.20497 7.35156 7.93276 8.44167 9.24341 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024992 B = 0.004437 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.069225 B = 6309.690921 C = 6820.621397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.135 4.135 5 C 0.505 3.495 6 O -0.590 6.590 7 N -0.711 5.711 8 C 0.158 3.842 9 H 0.073 0.927 10 C -0.142 4.142 11 C 0.189 3.811 12 N -0.602 5.602 13 C -0.249 4.249 14 H 0.075 0.925 15 C -0.053 4.053 16 N -0.936 5.936 17 Si 0.959 3.041 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.274 1.274 21 C 0.161 3.839 22 H 0.027 0.973 23 C -0.131 4.131 24 C -0.124 4.124 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.407 0.593 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.001 0.999 38 H 0.045 0.955 39 H 0.245 0.755 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -5.746 -11.916 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.138 4.138 4 C -0.175 4.175 5 C 0.294 3.706 6 O -0.472 6.472 7 N -0.363 5.363 8 C 0.053 3.947 9 H 0.091 0.909 10 C -0.182 4.182 11 C 0.063 3.937 12 N -0.326 5.326 13 C -0.379 4.379 14 H 0.093 0.907 15 C -0.248 4.248 16 N -0.583 5.583 17 Si 0.788 3.212 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.200 1.200 21 C 0.055 3.945 22 H 0.045 0.955 23 C -0.188 4.188 24 C -0.164 4.164 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.244 0.756 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.534 -5.137 -11.768 15.417 hybrid contribution 0.894 0.259 1.315 1.611 sum -7.640 -4.878 -10.453 13.836 Atomic orbital electron populations 1.21775 0.95547 1.02115 1.01654 1.21533 0.96264 0.95141 1.02888 1.21311 0.92874 0.97658 1.01959 1.21747 0.97871 0.91803 1.06064 1.21392 0.81973 0.92798 0.74456 1.90638 1.56259 1.48183 1.52077 1.46163 1.07119 1.09037 1.73970 1.20713 0.95589 0.82980 0.95374 0.90923 1.22378 0.98605 1.00064 0.97174 1.20379 0.83899 0.94550 0.94864 1.44359 1.02005 1.78680 1.07601 1.19473 0.93780 1.34177 0.90501 0.90707 1.25753 1.00292 0.99423 0.99303 1.70159 1.38302 1.40673 1.09157 0.85471 0.79902 0.78419 0.77439 1.20876 1.22590 1.19997 1.20655 0.95134 0.94785 0.83920 0.95534 1.21747 0.95641 1.01301 1.00150 1.22224 0.93086 1.01683 0.99366 0.93381 0.92753 0.91582 0.90563 0.91542 0.93479 0.92302 0.86241 0.88041 0.75627 0.93936 0.92329 0.98084 0.93621 0.94546 0.94021 0.90426 0.93343 0.90983 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.12 -1.98 5.93 30.60 0.18 -1.80 16 3 C -0.10 -2.20 4.50 30.59 0.14 -2.06 16 4 C -0.14 -2.95 5.70 29.85 0.17 -2.78 16 5 C 0.51 15.59 7.79 87.66 0.68 16.28 16 6 O -0.59 -22.76 15.64 -3.03 -0.05 -22.81 16 7 N -0.71 -21.65 4.26 -442.41 -1.89 -23.53 16 8 C 0.16 5.32 2.78 45.02 0.13 5.45 16 9 H 0.07 2.48 7.58 -2.39 -0.02 2.46 16 10 C -0.14 -5.76 5.77 30.67 0.18 -5.58 16 11 C 0.19 9.08 5.03 86.36 0.43 9.51 16 12 N -0.60 -28.39 2.99 -675.23 -2.02 -30.40 16 13 C -0.25 -13.02 8.60 84.03 0.72 -12.30 16 14 H 0.08 3.76 6.21 -2.91 -0.02 3.74 16 15 C -0.05 -2.89 4.96 84.86 0.42 -2.47 16 16 N -0.94 -54.83 11.14 21.65 0.24 -54.59 16 17 Si 0.96 44.53 29.58 68.60 2.03 46.56 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.16 5.85 3.19 44.97 0.14 5.99 16 22 H 0.03 0.96 6.65 -2.38 -0.02 0.94 16 23 C -0.13 -4.32 7.94 71.98 0.57 -3.74 16 24 C -0.12 -3.78 5.07 30.67 0.16 -3.63 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 32 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.41 11.33 6.87 -92.71 -0.64 10.69 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.00 0.06 7.74 -2.38 -0.02 0.04 16 38 H 0.05 2.56 6.06 -2.39 -0.01 2.54 16 39 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 40 H 0.04 1.53 7.62 -2.38 -0.02 1.51 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.05 1.64 7.45 -2.39 -0.02 1.62 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -65.61 340.51 3.27 -62.34 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.32 Total: 21.25 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 4.64 Total: 1.19 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.66 Total: -108.53 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.61 3.27 -62.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484967535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.011 kcal (2) G-P(sol) polarization free energy of solvation -65.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds