Wall clock time and date at job start Mon Mar 30 2020 00:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47596 * 2 1 4 4 C 1.52999 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46647 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00746 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99685 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00081 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.45898 * 34.96922 * 8 7 5 10 10 C 1.53039 * 109.45754 * 274.99898 * 8 7 5 11 11 C 1.53189 * 109.31340 * 178.61313 * 10 8 7 12 12 N 1.46923 * 108.77316 * 54.63536 * 11 10 8 13 13 C 1.36938 * 120.63249 * 126.41780 * 12 11 10 14 14 H 1.08004 * 119.99888 * 209.51645 * 13 12 11 15 15 C 1.38817 * 119.99896 * 29.50718 * 13 12 11 16 16 N 1.31611 * 119.99932 * 15.62137 * 15 13 12 17 17 Si 1.86806 * 119.99890 * 195.62009 * 15 13 12 18 18 H 1.48496 * 109.47257 * 94.72142 * 17 15 13 19 19 H 1.48495 * 109.46966 * 214.72365 * 17 15 13 20 20 H 1.48504 * 109.46951 * 334.72242 * 17 15 13 21 21 C 1.46928 * 118.73884 * 306.38884 * 12 11 10 22 22 H 1.08997 * 109.58753 * 293.67953 * 21 12 11 23 23 C 1.53005 * 109.58469 * 173.39860 * 21 12 11 24 24 C 1.53040 * 109.45968 * 154.93168 * 8 7 5 25 25 H 1.08995 * 109.47602 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47092 * 59.99798 * 1 2 3 27 27 H 1.09002 * 109.47277 * 300.00115 * 1 2 3 28 28 H 1.09004 * 109.47092 * 120.00202 * 2 1 3 29 29 H 1.09007 * 109.47116 * 239.99446 * 2 1 3 30 30 H 1.09001 * 109.46586 * 300.00073 * 3 2 1 31 31 H 1.09002 * 109.46902 * 59.99655 * 3 2 1 32 32 H 1.08994 * 109.47058 * 300.00293 * 4 3 2 33 33 H 1.09001 * 109.46536 * 60.00454 * 4 3 2 34 34 H 0.97000 * 119.99959 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.49908 * 298.56725 * 10 8 7 36 36 H 1.09004 * 109.49895 * 58.62819 * 10 8 7 37 37 H 1.09000 * 109.58530 * 174.42347 * 11 10 8 38 38 H 1.09005 * 109.58705 * 294.84800 * 11 10 8 39 39 H 0.96999 * 119.99809 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47172 * 60.00337 * 23 21 12 41 41 H 1.09008 * 109.46584 * 180.02562 * 23 21 12 42 42 H 1.08994 * 109.47094 * 299.99815 * 23 21 12 43 43 H 1.08998 * 109.49753 * 301.33024 * 24 8 7 44 44 H 1.08993 * 109.49797 * 61.43167 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0724 2.8631 0.0000 6 8 3.2844 3.7850 -0.0004 7 7 5.3975 3.1094 -0.0001 8 6 5.8860 4.4906 -0.0002 9 1 5.2131 5.1137 0.5889 10 6 5.9373 5.0131 -1.4377 11 6 6.4153 6.4685 -1.4310 12 7 7.6968 6.5420 -0.7161 13 6 8.7912 7.1187 -1.3033 14 1 9.7839 6.7818 -1.0432 15 6 8.6248 8.1360 -2.2330 16 7 7.4683 8.7569 -2.3291 17 14 10.0423 8.6239 -3.3475 18 1 9.9288 7.8993 -4.6387 19 1 9.9961 10.0873 -3.5954 20 1 11.3290 8.2728 -2.6944 21 6 7.7816 5.9855 0.6411 22 1 7.1582 6.5719 1.3161 23 6 9.2339 6.0234 1.1211 24 6 7.2883 4.5355 0.6111 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9330 0.9286 0.8908 33 1 3.9337 0.9284 -0.8892 34 1 6.0278 2.3720 -0.0001 35 1 6.6291 4.4056 -2.0212 36 1 4.9427 4.9584 -1.8804 37 1 6.5484 6.8141 -2.4561 38 1 5.6785 7.0928 -0.9254 39 1 7.3521 9.4680 -2.9784 40 1 9.5869 7.0545 1.1297 41 1 9.2946 5.6097 2.1278 42 1 9.8546 5.4323 0.4478 43 1 7.2552 4.1415 1.6269 44 1 7.9673 3.9325 0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484967538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:24 Heat of formation + Delta-G solvation = -46.548640 kcal Electronic energy + Delta-G solvation = -21087.209838 eV Core-core repulsion = 18038.894842 eV Total energy + Delta-G solvation = -3048.314997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.71857 -37.71181 -35.49964 -34.46766 -32.40693 -31.52051 -30.50886 -29.27848 -26.38538 -25.24436 -24.23539 -22.02600 -21.39257 -20.68760 -19.96248 -19.13243 -16.85673 -16.22246 -16.02777 -15.72322 -15.03708 -14.59999 -13.96856 -13.89904 -13.80540 -13.58526 -13.23725 -13.12267 -12.76500 -12.48543 -12.44382 -11.58946 -11.46966 -11.37019 -11.20013 -11.16599 -11.08338 -10.88599 -10.86366 -10.73135 -10.65539 -10.28117 -10.11265 -10.02200 -9.72992 -9.69681 -9.28117 -8.65134 -8.39735 -6.62246 -5.75341 -3.19578 2.87801 3.37921 3.44376 3.45487 3.46933 4.50402 4.69210 4.74964 4.78174 5.10137 5.15190 5.29722 5.33594 5.40828 5.43557 5.54275 5.61416 5.65980 5.68082 5.74749 5.80632 5.95659 6.02631 6.10593 6.17411 6.23727 6.29482 6.33028 6.44164 6.47354 6.54198 6.67817 6.82089 6.94303 7.05763 7.11499 7.40809 7.70347 7.79431 7.84326 8.48349 8.50207 9.24277 9.87942 10.45413 11.33312 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034035 B = 0.003701 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.495012 B = 7563.310355 C = 8018.061824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.506 3.494 6 O -0.542 6.542 7 N -0.727 5.727 8 C 0.150 3.850 9 H 0.080 0.920 10 C -0.146 4.146 11 C 0.175 3.825 12 N -0.588 5.588 13 C -0.251 4.251 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.171 3.829 22 H 0.026 0.974 23 C -0.135 4.135 24 C -0.133 4.133 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.394 0.606 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 -16.883 5.445 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.292 3.708 6 O -0.419 6.419 7 N -0.377 5.377 8 C 0.046 3.954 9 H 0.098 0.902 10 C -0.186 4.186 11 C 0.049 3.951 12 N -0.311 5.311 13 C -0.381 4.381 14 H 0.088 0.912 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.063 3.937 22 H 0.044 0.956 23 C -0.193 4.193 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.227 0.773 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.869 -16.046 5.346 18.255 hybrid contribution 1.010 -0.086 -0.689 1.226 sum -5.859 -16.131 4.657 17.783 Atomic orbital electron populations 1.21763 0.95806 1.01365 1.02083 1.21553 0.96064 0.96791 1.01824 1.21368 0.92940 0.96316 1.03686 1.21705 0.98025 0.94421 1.03978 1.20692 0.82545 0.91458 0.76069 1.90706 1.55295 1.46515 1.49401 1.46370 1.06743 1.09595 1.75024 1.21021 0.95249 0.81039 0.98081 0.90216 1.22558 1.00051 1.01226 0.94797 1.20735 0.86096 0.89037 0.99245 1.44171 1.08961 1.67666 1.10323 1.19187 0.86990 1.12048 1.19866 0.91226 1.25112 0.96811 0.96041 1.01678 1.70027 1.23808 1.24171 1.36601 0.86301 0.82053 0.77445 0.81126 1.21571 1.21827 1.20415 1.20361 0.94737 0.90306 0.88264 0.95596 1.21794 0.96866 1.02341 0.98277 1.22365 0.95103 1.00708 0.99126 0.92919 0.92631 0.92671 0.92119 0.92069 0.91177 0.91264 0.89294 0.89222 0.77291 0.92772 0.92973 0.89379 0.96195 0.93669 0.91841 0.94333 0.92819 0.92776 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.11 -1.08 4.50 -26.73 -0.12 -1.21 16 4 C -0.14 -1.40 5.70 -27.88 -0.16 -1.56 16 5 C 0.51 7.41 7.79 -10.98 -0.09 7.33 16 6 O -0.54 -10.39 15.64 5.56 0.09 -10.30 16 7 N -0.73 -10.21 5.08 -53.77 -0.27 -10.48 16 8 C 0.15 2.65 2.42 -67.89 -0.16 2.48 16 9 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 10 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 11 C 0.18 4.29 5.28 -3.71 -0.02 4.27 16 12 N -0.59 -14.50 2.99 -164.77 -0.49 -14.99 16 13 C -0.25 -6.72 8.58 -15.06 -0.13 -6.85 16 14 H 0.07 1.81 6.23 -52.48 -0.33 1.48 16 15 C 0.00 0.06 4.94 -17.43 -0.09 -0.02 16 16 N -0.90 -26.35 11.21 55.49 0.62 -25.73 16 17 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C 0.17 3.50 3.50 -67.60 -0.24 3.27 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 C -0.14 -2.50 7.95 37.16 0.30 -2.20 16 24 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 4.28 8.60 -40.82 -0.35 3.93 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.09 2.41 6.13 -51.93 -0.32 2.09 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 41 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -31.16 344.92 -8.73 -39.89 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.07 Total: 1.70 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.77 Total: -1.90 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.14 Total: -51.20 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.16 -8.73 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484967538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.656 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds