Wall clock time and date at job start Mon Mar 30 2020 00:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47596 * 2 1 4 4 C 1.52999 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46647 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00746 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99685 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00081 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.45898 * 34.96922 * 8 7 5 10 10 C 1.53039 * 109.45754 * 274.99898 * 8 7 5 11 11 C 1.53189 * 109.31340 * 178.61313 * 10 8 7 12 12 N 1.46923 * 108.77316 * 54.63536 * 11 10 8 13 13 C 1.36938 * 120.63249 * 126.41780 * 12 11 10 14 14 H 1.08004 * 119.99888 * 209.51645 * 13 12 11 15 15 C 1.38817 * 119.99896 * 29.50718 * 13 12 11 16 16 N 1.31611 * 119.99932 * 15.62137 * 15 13 12 17 17 Si 1.86806 * 119.99890 * 195.62009 * 15 13 12 18 18 H 1.48496 * 109.47257 * 94.72142 * 17 15 13 19 19 H 1.48495 * 109.46966 * 214.72365 * 17 15 13 20 20 H 1.48504 * 109.46951 * 334.72242 * 17 15 13 21 21 C 1.46928 * 118.73884 * 306.38884 * 12 11 10 22 22 H 1.08997 * 109.58753 * 293.67953 * 21 12 11 23 23 C 1.53005 * 109.58469 * 173.39860 * 21 12 11 24 24 C 1.53040 * 109.45968 * 154.93168 * 8 7 5 25 25 H 1.08995 * 109.47602 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47092 * 59.99798 * 1 2 3 27 27 H 1.09002 * 109.47277 * 300.00115 * 1 2 3 28 28 H 1.09004 * 109.47092 * 120.00202 * 2 1 3 29 29 H 1.09007 * 109.47116 * 239.99446 * 2 1 3 30 30 H 1.09001 * 109.46586 * 300.00073 * 3 2 1 31 31 H 1.09002 * 109.46902 * 59.99655 * 3 2 1 32 32 H 1.08994 * 109.47058 * 300.00293 * 4 3 2 33 33 H 1.09001 * 109.46536 * 60.00454 * 4 3 2 34 34 H 0.97000 * 119.99959 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.49908 * 298.56725 * 10 8 7 36 36 H 1.09004 * 109.49895 * 58.62819 * 10 8 7 37 37 H 1.09000 * 109.58530 * 174.42347 * 11 10 8 38 38 H 1.09005 * 109.58705 * 294.84800 * 11 10 8 39 39 H 0.96999 * 119.99809 * 179.97438 * 16 15 13 40 40 H 1.08993 * 109.47172 * 60.00337 * 23 21 12 41 41 H 1.09008 * 109.46584 * 180.02562 * 23 21 12 42 42 H 1.08994 * 109.47094 * 299.99815 * 23 21 12 43 43 H 1.08998 * 109.49753 * 301.33024 * 24 8 7 44 44 H 1.08993 * 109.49797 * 61.43167 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0724 2.8631 0.0000 6 8 3.2844 3.7850 -0.0004 7 7 5.3975 3.1094 -0.0001 8 6 5.8860 4.4906 -0.0002 9 1 5.2131 5.1137 0.5889 10 6 5.9373 5.0131 -1.4377 11 6 6.4153 6.4685 -1.4310 12 7 7.6968 6.5420 -0.7161 13 6 8.7912 7.1187 -1.3033 14 1 9.7839 6.7818 -1.0432 15 6 8.6248 8.1360 -2.2330 16 7 7.4683 8.7569 -2.3291 17 14 10.0423 8.6239 -3.3475 18 1 9.9288 7.8993 -4.6387 19 1 9.9961 10.0873 -3.5954 20 1 11.3290 8.2728 -2.6944 21 6 7.7816 5.9855 0.6411 22 1 7.1582 6.5719 1.3161 23 6 9.2339 6.0234 1.1211 24 6 7.2883 4.5355 0.6111 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5140 -0.8900 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9330 0.9286 0.8908 33 1 3.9337 0.9284 -0.8892 34 1 6.0278 2.3720 -0.0001 35 1 6.6291 4.4056 -2.0212 36 1 4.9427 4.9584 -1.8804 37 1 6.5484 6.8141 -2.4561 38 1 5.6785 7.0928 -0.9254 39 1 7.3521 9.4680 -2.9784 40 1 9.5869 7.0545 1.1297 41 1 9.2946 5.6097 2.1278 42 1 9.8546 5.4323 0.4478 43 1 7.2552 4.1415 1.6269 44 1 7.9673 3.9325 0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484967538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:23 Heat of formation + Delta-G solvation = -66.206028 kcal Electronic energy + Delta-G solvation = -21088.062247 eV Core-core repulsion = 18038.894842 eV Total energy + Delta-G solvation = -3049.167405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00273 -39.30530 -36.40615 -35.90050 -34.22072 -33.05026 -31.77409 -30.71444 -27.98955 -26.80987 -25.46826 -23.70393 -22.54521 -21.78622 -21.34726 -20.73407 -18.39629 -17.77546 -17.25932 -16.86798 -16.74222 -15.78644 -15.61265 -15.48863 -15.04710 -14.76988 -14.65290 -14.50292 -14.32328 -13.64479 -13.33769 -13.21175 -12.97274 -12.74168 -12.65681 -12.62233 -12.38285 -12.17117 -12.07856 -12.03262 -11.86269 -11.82098 -11.72651 -11.50268 -11.42058 -11.31290 -10.71054 -10.55906 -9.96314 -8.65495 -7.84031 -5.31114 1.47331 1.48443 1.57625 1.73136 2.27923 2.52487 3.32002 3.58297 3.80193 3.91561 3.96917 4.05724 4.10950 4.27545 4.37780 4.41131 4.50343 4.61154 4.67131 4.70958 4.75304 4.78264 4.87541 4.95776 4.96692 5.03281 5.07869 5.12486 5.13338 5.17024 5.30650 5.38342 5.41344 5.48798 5.52289 5.55149 5.62569 5.70015 5.72761 6.42788 6.68217 7.16493 7.38668 7.88314 8.41748 9.23502 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034035 B = 0.003701 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.495012 B = 7563.310355 C = 8018.061824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.129 4.129 5 C 0.500 3.500 6 O -0.595 6.595 7 N -0.713 5.713 8 C 0.160 3.840 9 H 0.050 0.950 10 C -0.129 4.129 11 C 0.184 3.816 12 N -0.603 5.603 13 C -0.248 4.248 14 H 0.082 0.918 15 C -0.058 4.058 16 N -0.942 5.942 17 Si 0.965 3.035 18 H -0.289 1.289 19 H -0.300 1.300 20 H -0.262 1.262 21 C 0.158 3.842 22 H 0.008 0.992 23 C -0.126 4.126 24 C -0.116 4.116 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.416 0.584 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.053 0.947 38 H -0.016 1.016 39 H 0.246 0.754 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 -20.434 6.424 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.144 4.144 4 C -0.168 4.168 5 C 0.289 3.711 6 O -0.476 6.476 7 N -0.364 5.364 8 C 0.055 3.945 9 H 0.068 0.932 10 C -0.170 4.170 11 C 0.057 3.943 12 N -0.327 5.327 13 C -0.379 4.379 14 H 0.099 0.901 15 C -0.253 4.253 16 N -0.589 5.589 17 Si 0.794 3.206 18 H -0.216 1.216 19 H -0.228 1.228 20 H -0.186 1.186 21 C 0.051 3.949 22 H 0.026 0.974 23 C -0.184 4.184 24 C -0.155 4.155 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.002 0.998 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.257 -19.667 6.354 21.326 hybrid contribution 0.462 1.031 -0.928 1.462 sum -4.796 -18.636 5.426 19.994 Atomic orbital electron populations 1.21796 0.95994 1.02091 1.01488 1.21514 0.95920 0.94948 1.03149 1.21352 0.93562 0.97734 1.01724 1.21738 0.97295 0.91045 1.06752 1.21639 0.82038 0.93038 0.74417 1.90698 1.56590 1.48647 1.51641 1.46098 1.07264 1.08490 1.74561 1.20614 0.95636 0.82784 0.95514 0.93176 1.22295 0.99236 0.98350 0.97091 1.20428 0.85831 0.91222 0.96829 1.44434 1.08203 1.67836 1.12224 1.19583 0.88003 1.11152 1.19112 0.90092 1.25913 0.99096 0.96672 1.03625 1.70209 1.26043 1.25096 1.37546 0.85271 0.79875 0.76302 0.79165 1.21577 1.22758 1.18636 1.20661 0.96353 0.92154 0.85685 0.97405 1.21710 0.94863 1.01235 1.00561 1.22162 0.94003 0.97993 1.01391 0.91487 0.93439 0.93188 0.90526 0.90861 0.93526 0.93091 0.85982 0.86559 0.74718 0.91905 0.94039 0.92816 0.99785 0.94449 0.94229 0.90389 0.92503 0.89231 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.91 71.98 0.71 -1.43 16 2 C -0.12 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.11 -2.03 4.50 30.59 0.14 -1.89 16 4 C -0.13 -2.13 5.70 29.85 0.17 -1.96 16 5 C 0.50 13.84 7.79 87.66 0.68 14.52 16 6 O -0.60 -23.18 15.64 -3.02 -0.05 -23.22 16 7 N -0.71 -18.13 5.08 -442.40 -2.25 -20.38 16 8 C 0.16 5.49 2.42 45.02 0.11 5.60 16 9 H 0.05 2.05 7.58 -2.39 -0.02 2.04 16 10 C -0.13 -5.30 5.65 30.67 0.17 -5.13 16 11 C 0.18 9.43 5.28 86.36 0.46 9.89 16 12 N -0.60 -30.16 2.99 -675.21 -2.02 -32.18 16 13 C -0.25 -13.33 8.58 84.03 0.72 -12.61 16 14 H 0.08 4.11 6.23 -2.91 -0.02 4.09 16 15 C -0.06 -3.30 4.94 84.86 0.42 -2.88 16 16 N -0.94 -57.57 11.21 21.65 0.24 -57.33 16 17 Si 0.97 45.14 29.58 68.60 2.03 47.17 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 C 0.16 6.31 3.50 44.98 0.16 6.47 16 22 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 23 C -0.13 -4.35 7.95 71.98 0.57 -3.78 16 24 C -0.12 -3.57 4.84 30.67 0.15 -3.42 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 31 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.42 7.16 8.60 -92.71 -0.80 6.37 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.05 3.10 6.13 -2.39 -0.01 3.09 16 38 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 39 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 41 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.06 1.92 7.44 -2.39 -0.02 1.90 16 43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -72.25 344.92 2.76 -69.49 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.15 Total: 14.42 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.64 Total: 2.01 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -4.02 Total: -109.88 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.25 2.76 -69.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484967538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.287 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds