Wall clock time and date at job start Mon Mar 30 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47076 * 2 1 4 4 C 1.52993 * 109.47244 * 120.00095 * 2 1 3 5 5 C 1.50705 * 109.47157 * 175.00228 * 4 2 1 6 6 O 1.21276 * 119.99888 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99979 * 180.02562 * 5 4 2 8 8 C 1.46924 * 120.63019 * 354.41880 * 7 5 4 9 9 C 1.53195 * 108.77341 * 126.39124 * 8 7 5 10 10 C 1.53036 * 109.31175 * 54.63604 * 9 8 7 11 11 C 1.53038 * 109.53982 * 298.63455 * 10 9 8 12 12 C 1.46926 * 120.60138 * 174.40151 * 7 5 4 13 13 H 1.09001 * 109.56507 * 113.80593 * 12 7 5 14 14 C 1.52998 * 109.61842 * 353.37381 * 12 7 5 15 15 N 1.46500 * 109.47142 * 181.81817 * 14 12 7 16 16 C 1.36936 * 120.00213 * 184.95240 * 15 14 12 17 17 H 1.08000 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00273 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99766 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47197 * 119.99968 * 20 18 16 23 23 H 1.48495 * 109.47101 * 239.99766 * 20 18 16 24 24 H 1.09000 * 109.47083 * 299.99763 * 1 2 3 25 25 H 1.09003 * 109.47308 * 59.99444 * 1 2 3 26 26 H 1.08995 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47083 * 240.00237 * 2 1 3 28 28 H 1.09009 * 109.47140 * 60.00301 * 3 2 1 29 29 H 1.09000 * 109.47307 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47506 * 300.00434 * 3 2 1 31 31 H 1.08995 * 109.47427 * 55.00039 * 4 2 1 32 32 H 1.08998 * 109.47662 * 294.99928 * 4 2 1 33 33 H 1.09006 * 109.58564 * 6.60817 * 8 7 5 34 34 H 1.08994 * 109.58669 * 246.18192 * 8 7 5 35 35 H 1.08998 * 109.49830 * 294.68444 * 9 8 7 36 36 H 1.09006 * 109.52240 * 174.59857 * 9 8 7 37 37 H 1.08998 * 109.46293 * 178.61321 * 10 9 8 38 38 H 1.09005 * 109.45200 * 58.64746 * 10 9 8 39 39 H 1.08996 * 109.50089 * 181.31657 * 11 10 9 40 40 H 1.09003 * 109.49583 * 301.37915 * 11 10 9 41 41 H 1.09000 * 109.47250 * 301.82066 * 14 12 7 42 42 H 1.08999 * 109.46697 * 61.82276 * 14 12 7 43 43 H 0.97006 * 120.00022 * 4.95848 * 15 14 12 44 44 H 0.97004 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1888 6 8 4.1450 -0.3747 0.2399 7 7 4.2150 -1.4322 2.1890 8 6 3.5136 -1.8798 3.3999 9 6 3.8274 -3.3612 3.6322 10 6 5.3447 -3.5562 3.6763 11 6 5.9537 -3.1379 2.3361 12 6 5.6639 -1.6541 2.0882 13 1 6.1784 -1.0513 2.8365 14 6 6.1473 -1.2637 0.6900 15 7 7.5842 -1.5270 0.5790 16 6 8.2620 -1.1605 -0.5530 17 1 7.7374 -0.6770 -1.3638 18 6 9.6233 -1.4105 -0.6585 19 7 10.2626 -2.0002 0.3294 20 14 10.5480 -0.9099 -2.2024 21 1 9.6078 -0.2690 -3.1566 22 1 11.6226 0.0512 -1.8462 23 1 11.1489 -2.1133 -2.8316 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6054 -1.7197 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 2.4392 -1.7501 3.2689 34 1 3.8526 -1.2959 4.2555 35 1 3.4079 -3.9538 2.8193 36 1 3.3918 -3.6818 4.5786 37 1 5.5706 -4.6055 3.8661 38 1 5.7663 -2.9440 4.4736 39 1 7.0314 -3.2990 2.3600 40 1 5.5146 -3.7330 1.5354 41 1 5.6117 -1.8501 -0.0565 42 1 5.9583 -0.2033 0.5233 43 1 8.0555 -1.9610 1.3074 44 1 11.2140 -2.1745 0.2559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485034639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:03 Heat of formation + Delta-G solvation = -29.734869 kcal Electronic energy + Delta-G solvation = -21767.876702 eV Core-core repulsion = 18720.290805 eV Total energy + Delta-G solvation = -3047.585897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39701 -37.57839 -35.57954 -34.56447 -32.73856 -31.94595 -29.70215 -28.31255 -27.09876 -25.87924 -24.29926 -23.11999 -21.34483 -20.91051 -19.94145 -18.68794 -17.04859 -16.67591 -15.72619 -15.68345 -14.65298 -14.43623 -14.32078 -14.03974 -13.94848 -13.57435 -13.37684 -13.13586 -12.96574 -12.66734 -12.30165 -12.13049 -11.95966 -11.83226 -11.49326 -11.04806 -10.98981 -10.88203 -10.85326 -10.77261 -10.70542 -10.62986 -10.46233 -10.28389 -9.90020 -9.59718 -8.83022 -8.55204 -8.26678 -6.72084 -5.63278 -2.89133 2.89938 3.16291 3.52433 3.58145 3.61402 4.56949 4.69034 4.75221 4.80478 4.86753 4.91639 5.01860 5.21849 5.28913 5.39339 5.43460 5.44735 5.51295 5.59486 5.65339 5.68525 5.72026 5.84339 5.85623 5.87027 5.93867 6.02698 6.04997 6.12714 6.27053 6.32019 6.33527 6.37034 6.52356 6.60091 6.83806 7.16728 7.35955 7.69366 7.88379 8.49659 8.60455 9.67573 10.27451 10.62270 11.60587 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.005552 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.840834 B = 5041.860367 C = 6477.819689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.153 4.153 4 C -0.136 4.136 5 C 0.506 3.494 6 O -0.513 6.513 7 N -0.610 5.610 8 C 0.109 3.891 9 C -0.134 4.134 10 C -0.120 4.120 11 C -0.127 4.127 12 C 0.139 3.861 13 H 0.068 0.932 14 C 0.162 3.838 15 N -0.739 5.739 16 C -0.222 4.222 17 H 0.070 0.930 18 C -0.020 4.020 19 N -0.939 5.939 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.378 0.622 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.540 -0.333 8.463 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.210 4.210 4 C -0.176 4.176 5 C 0.294 3.706 6 O -0.388 6.388 7 N -0.345 5.345 8 C -0.015 4.015 9 C -0.173 4.173 10 C -0.158 4.158 11 C -0.165 4.165 12 C 0.037 3.963 13 H 0.086 0.914 14 C 0.035 3.965 15 N -0.385 5.385 16 C -0.354 4.354 17 H 0.088 0.912 18 C -0.215 4.215 19 N -0.590 5.590 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.221 1.221 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.212 0.788 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.211 0.003 7.770 21.653 hybrid contribution 0.718 -0.081 -0.369 0.811 sum -19.493 -0.078 7.401 20.851 Atomic orbital electron populations 1.21858 0.95316 1.01454 1.01747 1.20868 0.94661 0.97071 0.97460 1.21959 1.03629 0.94813 1.00627 1.21823 0.92951 1.02335 1.00472 1.20679 0.89731 0.77880 0.82325 1.90788 1.68549 1.46134 1.33295 1.48223 1.08811 1.59459 1.18006 1.21695 0.97007 0.95171 0.87589 1.21921 0.97430 0.96049 1.01865 1.21545 0.94614 1.01368 0.98280 1.21936 1.02317 0.95731 0.96538 1.21568 0.78436 0.95721 1.00608 0.91350 1.21273 0.84936 0.99873 0.90402 1.42613 1.03380 1.72680 1.19795 1.19299 0.90860 1.30616 0.94610 0.91157 1.24694 0.96600 1.02170 0.98043 1.69668 1.08657 1.48856 1.31778 0.86122 0.79818 0.77583 0.82828 1.20595 1.22039 1.22058 0.92857 0.92522 0.92872 0.90319 0.93668 0.90302 0.93137 0.89413 0.89489 0.90036 0.91527 0.91611 0.91145 0.91874 0.91930 0.89686 0.91784 0.95959 0.92561 0.78812 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.08 -0.91 2.57 -90.62 -0.23 -1.14 16 3 C -0.15 -1.85 8.93 37.16 0.33 -1.52 16 4 C -0.14 -1.43 3.53 -27.88 -0.10 -1.53 16 5 C 0.51 7.66 7.25 -10.98 -0.08 7.58 16 6 O -0.51 -9.95 9.52 5.56 0.05 -9.90 16 7 N -0.61 -8.76 2.97 -165.21 -0.49 -9.25 16 8 C 0.11 1.09 6.35 -3.71 -0.02 1.06 16 9 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 10 C -0.12 -1.45 5.88 -26.69 -0.16 -1.61 16 11 C -0.13 -2.06 5.09 -26.61 -0.14 -2.20 16 12 C 0.14 2.48 3.10 -67.60 -0.21 2.27 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 14 C 0.16 3.71 4.14 -4.04 -0.02 3.69 16 15 N -0.74 -20.02 5.38 -59.91 -0.32 -20.34 16 16 C -0.22 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 19 N -0.94 -29.41 13.06 55.49 0.72 -28.68 16 20 Si 0.90 23.60 29.55 -169.99 -5.02 18.58 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 1.03 7.95 -51.93 -0.41 0.61 16 28 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.08 1.21 5.95 -51.93 -0.31 0.90 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.09 0.75 7.72 -51.93 -0.40 0.35 16 33 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.57 6.89 -51.93 -0.36 1.22 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.56 7.24 -51.93 -0.38 0.18 16 42 H 0.06 1.41 6.24 -51.93 -0.32 1.09 16 43 H 0.38 10.43 6.36 -40.82 -0.26 10.17 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -33.56 335.45 -8.47 -42.03 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -7.78 Total: 5.77 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.69 Total: -3.27 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.09 Total: -58.27 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.05 Total: -9.90 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.56 -8.47 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485034639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.291 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds