Wall clock time and date at job start Mon Mar 30 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47076 * 2 1 4 4 C 1.52993 * 109.47244 * 120.00095 * 2 1 3 5 5 C 1.50705 * 109.47157 * 175.00228 * 4 2 1 6 6 O 1.21276 * 119.99888 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99979 * 180.02562 * 5 4 2 8 8 C 1.46924 * 120.63019 * 354.41880 * 7 5 4 9 9 C 1.53195 * 108.77341 * 126.39124 * 8 7 5 10 10 C 1.53036 * 109.31175 * 54.63604 * 9 8 7 11 11 C 1.53038 * 109.53982 * 298.63455 * 10 9 8 12 12 C 1.46926 * 120.60138 * 174.40151 * 7 5 4 13 13 H 1.09001 * 109.56507 * 113.80593 * 12 7 5 14 14 C 1.52998 * 109.61842 * 353.37381 * 12 7 5 15 15 N 1.46500 * 109.47142 * 181.81817 * 14 12 7 16 16 C 1.36936 * 120.00213 * 184.95240 * 15 14 12 17 17 H 1.08000 * 120.00114 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00273 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99766 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47081 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47197 * 119.99968 * 20 18 16 23 23 H 1.48495 * 109.47101 * 239.99766 * 20 18 16 24 24 H 1.09000 * 109.47083 * 299.99763 * 1 2 3 25 25 H 1.09003 * 109.47308 * 59.99444 * 1 2 3 26 26 H 1.08995 * 109.46911 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47083 * 240.00237 * 2 1 3 28 28 H 1.09009 * 109.47140 * 60.00301 * 3 2 1 29 29 H 1.09000 * 109.47307 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47506 * 300.00434 * 3 2 1 31 31 H 1.08995 * 109.47427 * 55.00039 * 4 2 1 32 32 H 1.08998 * 109.47662 * 294.99928 * 4 2 1 33 33 H 1.09006 * 109.58564 * 6.60817 * 8 7 5 34 34 H 1.08994 * 109.58669 * 246.18192 * 8 7 5 35 35 H 1.08998 * 109.49830 * 294.68444 * 9 8 7 36 36 H 1.09006 * 109.52240 * 174.59857 * 9 8 7 37 37 H 1.08998 * 109.46293 * 178.61321 * 10 9 8 38 38 H 1.09005 * 109.45200 * 58.64746 * 10 9 8 39 39 H 1.08996 * 109.50089 * 181.31657 * 11 10 9 40 40 H 1.09003 * 109.49583 * 301.37915 * 11 10 9 41 41 H 1.09000 * 109.47250 * 301.82066 * 14 12 7 42 42 H 1.08999 * 109.46697 * 61.82276 * 14 12 7 43 43 H 0.97006 * 120.00022 * 4.95848 * 15 14 12 44 44 H 0.97004 * 119.99763 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8293 1.1888 6 8 4.1450 -0.3747 0.2399 7 7 4.2150 -1.4322 2.1890 8 6 3.5136 -1.8798 3.3999 9 6 3.8274 -3.3612 3.6322 10 6 5.3447 -3.5562 3.6763 11 6 5.9537 -3.1379 2.3361 12 6 5.6639 -1.6541 2.0882 13 1 6.1784 -1.0513 2.8365 14 6 6.1473 -1.2637 0.6900 15 7 7.5842 -1.5270 0.5790 16 6 8.2620 -1.1605 -0.5530 17 1 7.7374 -0.6770 -1.3638 18 6 9.6233 -1.4105 -0.6585 19 7 10.2626 -2.0002 0.3294 20 14 10.5480 -0.9099 -2.2024 21 1 9.6078 -0.2690 -3.1566 22 1 11.6226 0.0512 -1.8462 23 1 11.1489 -2.1133 -2.8316 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9564 0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6054 -1.7197 1.2951 32 1 1.7517 -0.1584 2.1369 33 1 2.4392 -1.7501 3.2689 34 1 3.8526 -1.2959 4.2555 35 1 3.4079 -3.9538 2.8193 36 1 3.3918 -3.6818 4.5786 37 1 5.5706 -4.6055 3.8661 38 1 5.7663 -2.9440 4.4736 39 1 7.0314 -3.2990 2.3600 40 1 5.5146 -3.7330 1.5354 41 1 5.6117 -1.8501 -0.0565 42 1 5.9583 -0.2033 0.5233 43 1 8.0555 -1.9610 1.3074 44 1 11.2140 -2.1745 0.2559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485034639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:02 Heat of formation + Delta-G solvation = -51.599680 kcal Electronic energy + Delta-G solvation = -21768.824831 eV Core-core repulsion = 18720.290805 eV Total energy + Delta-G solvation = -3048.534026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60271 -38.73342 -36.77259 -36.27698 -33.97973 -33.69358 -31.48262 -29.26301 -27.92083 -27.53609 -25.53950 -24.94269 -22.78821 -22.02763 -20.97285 -19.88636 -19.12068 -17.91678 -17.09020 -16.79307 -16.40371 -15.67164 -15.56158 -15.31640 -15.12745 -14.84845 -14.73387 -14.49369 -14.29060 -14.15016 -13.54629 -13.15245 -13.07616 -12.96209 -12.86683 -12.69036 -12.64026 -12.20173 -12.08798 -12.03591 -11.89201 -11.83812 -11.69523 -11.59291 -11.49109 -11.35362 -11.00877 -10.00180 -9.52099 -8.97234 -7.98381 -5.26336 1.42253 1.43996 1.55006 1.75265 2.03305 2.54575 3.34340 3.57380 3.81480 3.87597 3.94730 3.99687 4.06844 4.13038 4.15926 4.29476 4.38253 4.45291 4.62437 4.67651 4.72204 4.74391 4.76749 4.85086 4.87953 4.97944 5.05398 5.09250 5.11277 5.15712 5.20696 5.26937 5.32557 5.34386 5.44307 5.47844 5.49707 5.57094 5.72892 6.25050 6.57988 7.30547 7.36031 8.05832 8.33188 9.25556 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.005552 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.840834 B = 5041.860367 C = 6477.819689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.123 4.123 5 C 0.493 3.507 6 O -0.568 6.568 7 N -0.609 5.609 8 C 0.101 3.899 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.120 4.120 12 C 0.149 3.851 13 H 0.063 0.937 14 C 0.175 3.825 15 N -0.746 5.746 16 C -0.243 4.243 17 H 0.061 0.939 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.974 3.026 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.287 1.287 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.047 0.953 41 H -0.001 1.001 42 H 0.032 0.968 43 H 0.373 0.627 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 -0.713 10.138 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.208 4.208 4 C -0.163 4.163 5 C 0.283 3.717 6 O -0.447 6.447 7 N -0.343 5.343 8 C -0.020 4.020 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.158 4.158 12 C 0.045 3.955 13 H 0.081 0.919 14 C 0.050 3.950 15 N -0.392 5.392 16 C -0.375 4.375 17 H 0.079 0.921 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.213 1.213 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.050 0.950 43 H 0.206 0.794 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.832 -0.388 9.482 24.725 hybrid contribution 1.511 0.057 -0.900 1.759 sum -21.321 -0.331 8.582 22.986 Atomic orbital electron populations 1.21786 0.92471 1.02627 1.02641 1.20862 0.96836 0.95840 0.96679 1.21910 1.01000 0.96216 1.01693 1.21854 0.88683 1.04352 1.01367 1.21674 0.91846 0.76720 0.81441 1.90774 1.70046 1.48396 1.35458 1.48351 1.07142 1.59182 1.19654 1.22119 0.98631 0.95471 0.85777 1.21920 0.95154 0.95746 1.03768 1.21531 0.96560 1.02025 0.95169 1.21811 1.00593 0.94339 0.99074 1.21164 0.81178 0.96574 0.96622 0.91928 1.21104 0.82593 0.97884 0.93461 1.42777 1.04992 1.72462 1.18950 1.19540 0.91643 1.30956 0.95390 0.92145 1.25527 0.97233 1.02272 1.01381 1.69811 1.08872 1.49576 1.33574 0.85063 0.78288 0.77329 0.79033 1.19900 1.21346 1.21345 0.91026 0.92619 0.91547 0.93388 0.91690 0.94303 0.92974 0.86592 0.86236 0.86351 0.90131 0.91886 0.87374 0.90759 0.91223 0.92857 0.93372 0.98359 0.95006 0.79395 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.08 -1.75 2.57 -10.80 -0.03 -1.78 16 3 C -0.15 -3.64 8.93 71.98 0.64 -2.99 16 4 C -0.12 -2.26 3.53 29.85 0.11 -2.16 16 5 C 0.49 14.88 7.25 87.66 0.64 15.52 16 6 O -0.57 -23.52 9.52 -3.02 -0.03 -23.55 16 7 N -0.61 -16.97 2.97 -795.01 -2.36 -19.33 16 8 C 0.10 1.63 6.35 86.36 0.55 2.18 16 9 C -0.13 -1.97 6.08 30.67 0.19 -1.79 16 10 C -0.12 -2.55 5.88 30.62 0.18 -2.37 16 11 C -0.12 -4.00 5.09 30.67 0.16 -3.84 16 12 C 0.15 5.47 3.10 44.98 0.14 5.61 16 13 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.18 8.63 4.14 86.38 0.36 8.99 16 15 N -0.75 -42.87 5.38 -343.45 -1.85 -44.71 16 16 C -0.24 -15.25 9.99 84.03 0.84 -14.41 16 17 H 0.06 3.82 7.83 -2.91 -0.02 3.80 16 18 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 19 N -0.97 -61.94 13.06 21.65 0.28 -61.66 16 20 Si 0.97 49.51 29.55 68.60 2.03 51.54 16 21 H -0.27 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.04 1.25 5.95 -2.39 -0.01 1.24 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 1.54 7.92 -2.39 -0.02 1.52 16 32 H 0.12 1.48 7.72 -2.39 -0.02 1.46 16 33 H 0.12 1.09 5.93 -2.38 -0.01 1.08 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.05 2.09 6.89 -2.39 -0.02 2.07 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.00 -0.08 7.24 -2.39 -0.02 -0.10 16 42 H 0.03 1.74 6.24 -2.39 -0.01 1.72 16 43 H 0.37 21.78 6.36 -92.70 -0.59 21.19 16 44 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -78.43 335.45 3.33 -75.10 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.37 Total: 24.85 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 4.89 Total: -2.24 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -3.93 Total: -125.70 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.03 Total: -23.55 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.03 Total: 51.54 kcal Total: -78.43 3.33 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485034639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.500 kcal (2) G-P(sol) polarization free energy of solvation -78.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds