Wall clock time and date at job start Mon Mar 30 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46687 * 2 1 4 4 C 1.53001 * 109.46687 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47203 * 55.00078 * 4 3 2 6 6 C 1.53007 * 109.47066 * 294.99681 * 4 3 2 7 7 C 1.50694 * 109.46753 * 175.00000 * 4 3 2 8 8 O 1.21279 * 120.00279 * 7.15467 * 7 4 3 9 9 N 1.34780 * 119.99905 * 187.15564 * 7 4 3 10 10 C 1.46499 * 119.99981 * 185.53471 * 9 7 4 11 11 C 1.46505 * 119.99653 * 5.53288 * 9 7 4 12 12 C 1.53781 * 113.61009 * 212.47748 * 11 9 7 13 13 C 1.53955 * 87.01818 * 220.04946 * 12 11 9 14 14 N 1.46507 * 113.74405 * 139.94383 * 13 12 11 15 15 C 1.36935 * 119.99965 * 107.40178 * 14 13 12 16 16 H 1.08008 * 119.99894 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00188 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47323 * 90.00029 * 19 17 15 21 21 H 1.48501 * 109.47266 * 210.00246 * 19 17 15 22 22 H 1.48499 * 109.47158 * 330.00154 * 19 17 15 23 23 C 1.53778 * 113.61065 * 114.87383 * 11 9 7 24 24 H 1.09000 * 109.47331 * 300.00051 * 1 2 3 25 25 H 1.08999 * 109.47384 * 60.00367 * 1 2 3 26 26 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46875 * 119.99655 * 2 1 3 28 28 H 1.08995 * 109.46961 * 239.99670 * 2 1 3 29 29 H 1.08999 * 109.46908 * 299.99924 * 3 2 1 30 30 H 1.09000 * 109.47277 * 59.99916 * 3 2 1 31 31 H 1.09001 * 109.46749 * 64.15162 * 6 4 3 32 32 H 1.08992 * 109.46938 * 184.14835 * 6 4 3 33 33 H 1.09005 * 109.46931 * 304.15219 * 6 4 3 34 34 H 1.08996 * 109.47249 * 90.65184 * 10 9 7 35 35 H 1.09001 * 109.46939 * 210.64622 * 10 9 7 36 36 H 1.08993 * 109.47346 * 330.64484 * 10 9 7 37 37 H 1.08991 * 112.85383 * 343.67296 * 11 9 7 38 38 H 1.09002 * 113.62009 * 334.56880 * 12 11 9 39 39 H 1.08999 * 113.61619 * 105.47571 * 12 11 9 40 40 H 1.08998 * 113.53896 * 270.81442 * 13 12 11 41 41 H 0.96997 * 119.99997 * 287.40433 * 14 13 12 42 42 H 0.96997 * 120.00359 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.61272 * 254.52651 * 23 11 9 44 44 H 1.09001 * 113.61916 * 25.42618 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0794 0.8332 1.3084 7 6 4.0722 2.8580 -0.1232 8 8 3.2918 3.7850 -0.0734 9 7 5.3888 3.0937 -0.2892 10 6 5.8925 4.4694 -0.2881 11 6 6.3162 1.9742 -0.4709 12 6 7.7136 2.2303 0.1176 13 6 8.2798 1.5329 -1.1327 14 7 9.4834 2.1720 -1.6705 15 6 10.7038 1.5692 -1.5208 16 1 10.7790 0.6224 -1.0066 17 6 11.8443 2.1750 -2.0299 18 7 11.7527 3.3291 -2.6561 19 14 13.5089 1.3524 -1.8264 20 1 13.7659 0.4613 -2.9861 21 1 14.5686 2.3903 -1.7553 22 1 13.5158 0.5516 -0.5758 23 6 6.9870 1.9483 -1.8544 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.7780 -0.2129 1.3634 32 1 5.1668 0.9002 1.3411 33 1 3.6562 1.3782 2.1523 34 1 6.1657 4.7554 0.7276 35 1 6.7691 4.5359 -0.9325 36 1 5.1176 5.1404 -0.6586 37 1 5.8869 1.0168 -0.1757 38 1 7.9729 3.2870 0.1833 39 1 7.9032 1.6886 1.0443 40 1 8.3886 0.4544 -1.0179 41 1 9.4158 3.0222 -2.1326 42 1 12.5496 3.7523 -3.0122 43 1 6.5907 1.1792 -2.5174 44 1 7.0471 2.9277 -2.3289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486458320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:03 Heat of formation + Delta-G solvation = -20.300822 kcal Electronic energy + Delta-G solvation = -21061.834402 eV Core-core repulsion = 18014.657596 eV Total energy + Delta-G solvation = -3047.176806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40301 -38.30393 -36.11711 -34.58389 -32.90815 -32.22412 -29.95105 -27.40361 -26.76615 -25.21194 -24.66228 -23.53273 -22.36470 -20.88002 -19.30305 -18.64168 -17.17711 -17.07166 -16.01285 -15.72422 -15.21056 -14.69401 -14.62656 -14.12734 -14.01725 -13.64965 -13.23752 -13.01505 -12.71559 -12.49266 -12.36037 -12.15818 -12.10300 -11.89443 -11.69382 -11.40410 -11.27402 -11.11150 -10.97560 -10.92471 -10.69754 -10.61117 -10.46455 -10.31986 -10.05503 -9.75959 -9.43240 -8.94769 -8.40619 -7.04156 -5.84424 -3.13932 2.70860 3.13868 3.39116 3.44591 3.46197 4.40785 4.54836 4.59401 4.75177 4.94214 4.97388 5.04161 5.07200 5.11440 5.16252 5.30917 5.39755 5.49321 5.57323 5.62211 5.67134 5.70687 5.71634 5.78530 5.80253 5.86793 5.92287 5.95642 6.01171 6.02666 6.16746 6.22342 6.23862 6.25330 6.40434 6.48321 6.78003 6.93236 7.58083 7.63607 8.28111 8.33690 9.45103 10.01508 10.35680 11.37809 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.003553 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.317412 B = 7878.377065 C = 8316.780130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.111 4.111 5 H 0.095 0.905 6 C -0.151 4.151 7 C 0.516 3.484 8 O -0.551 6.551 9 N -0.597 5.597 10 C 0.083 3.917 11 C 0.101 3.899 12 C -0.175 4.175 13 C 0.170 3.830 14 N -0.710 5.710 15 C -0.246 4.246 16 H 0.072 0.928 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.165 4.165 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.869 -5.792 6.109 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.208 4.208 7 C 0.304 3.696 8 O -0.430 6.430 9 N -0.329 5.329 10 C -0.059 4.059 11 C -0.003 4.003 12 C -0.217 4.217 13 C 0.057 3.943 14 N -0.347 5.347 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.739 3.261 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.205 4.205 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.071 -5.380 6.153 19.833 hybrid contribution 1.075 -0.047 -0.094 1.081 sum -16.995 -5.427 6.059 18.841 Atomic orbital electron populations 1.21760 0.95886 1.01392 1.01901 1.21603 0.95892 0.96751 1.02137 1.21422 0.92416 0.96505 1.03328 1.21320 0.97541 0.93808 1.00585 0.88688 1.21966 1.01971 1.01151 0.95719 1.20685 0.81849 0.91396 0.75678 1.90650 1.55214 1.46118 1.50983 1.47857 1.06700 1.07473 1.70821 1.21594 1.00288 0.82324 1.01735 1.22908 0.89201 0.89645 0.98551 1.24358 0.93379 1.02976 1.00964 1.21383 0.85657 0.96118 0.91185 1.42361 1.01638 1.24546 1.66178 1.19293 0.84662 1.03201 1.30581 0.90985 1.24774 0.98054 0.97188 1.00768 1.69655 1.28497 1.17253 1.42525 0.86183 0.83984 0.78246 0.77722 1.21646 1.21745 1.20682 1.23961 0.98295 1.02274 0.95983 0.92769 0.92755 0.92871 0.91721 0.91967 0.91422 0.91333 0.91247 0.91255 0.92139 0.92919 0.90538 0.90883 0.86837 0.89621 0.92050 0.90274 0.78055 0.93383 0.91720 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.01 5.69 -26.73 -0.15 -1.16 16 3 C -0.10 -1.01 3.99 -26.73 -0.11 -1.12 16 4 C -0.11 -1.20 1.87 -91.77 -0.17 -1.37 16 5 H 0.10 0.93 7.50 -51.93 -0.39 0.55 16 6 C -0.15 -1.39 8.40 37.16 0.31 -1.08 16 7 C 0.52 7.38 6.96 -10.99 -0.08 7.31 16 8 O -0.55 -9.63 15.54 5.56 0.09 -9.55 16 9 N -0.60 -8.35 3.08 -173.01 -0.53 -8.88 16 10 C 0.08 1.16 9.13 59.85 0.55 1.71 16 11 C 0.10 1.34 3.19 -67.12 -0.21 1.13 16 12 C -0.17 -2.75 7.27 -25.83 -0.19 -2.94 16 13 C 0.17 3.08 4.48 -67.02 -0.30 2.78 16 14 N -0.71 -16.93 5.41 -52.54 -0.28 -17.22 16 15 C -0.25 -6.58 9.97 -15.06 -0.15 -6.73 16 16 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 19 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.16 -2.52 7.39 -25.92 -0.19 -2.72 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.47 6.66 -51.93 -0.35 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.51 6.77 -51.93 -0.35 0.16 16 32 H 0.07 0.67 5.68 -51.93 -0.29 0.37 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.08 6.42 -51.93 -0.33 0.75 16 36 H 0.07 1.05 7.33 -51.93 -0.38 0.67 16 37 H 0.11 1.28 4.61 -51.93 -0.24 1.04 16 38 H 0.09 1.47 6.47 -51.93 -0.34 1.13 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.39 9.84 7.92 -40.82 -0.32 9.52 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.37 7.25 -51.93 -0.38 0.99 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -30.57 343.89 -7.83 -38.40 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.56 Total: 7.40 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.42 Total: -5.37 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.09 Total: -52.85 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.57 -7.83 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486458320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.101 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds