Wall clock time and date at job start Mon Mar 30 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46687 * 2 1 4 4 C 1.53001 * 109.46687 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47203 * 55.00078 * 4 3 2 6 6 C 1.53007 * 109.47066 * 294.99681 * 4 3 2 7 7 C 1.50694 * 109.46753 * 175.00000 * 4 3 2 8 8 O 1.21279 * 120.00279 * 7.15467 * 7 4 3 9 9 N 1.34780 * 119.99905 * 187.15564 * 7 4 3 10 10 C 1.46499 * 119.99981 * 185.53471 * 9 7 4 11 11 C 1.46505 * 119.99653 * 5.53288 * 9 7 4 12 12 C 1.53781 * 113.61009 * 212.47748 * 11 9 7 13 13 C 1.53955 * 87.01818 * 220.04946 * 12 11 9 14 14 N 1.46507 * 113.74405 * 139.94383 * 13 12 11 15 15 C 1.36935 * 119.99965 * 107.40178 * 14 13 12 16 16 H 1.08008 * 119.99894 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00188 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00076 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00190 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47323 * 90.00029 * 19 17 15 21 21 H 1.48501 * 109.47266 * 210.00246 * 19 17 15 22 22 H 1.48499 * 109.47158 * 330.00154 * 19 17 15 23 23 C 1.53778 * 113.61065 * 114.87383 * 11 9 7 24 24 H 1.09000 * 109.47331 * 300.00051 * 1 2 3 25 25 H 1.08999 * 109.47384 * 60.00367 * 1 2 3 26 26 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46875 * 119.99655 * 2 1 3 28 28 H 1.08995 * 109.46961 * 239.99670 * 2 1 3 29 29 H 1.08999 * 109.46908 * 299.99924 * 3 2 1 30 30 H 1.09000 * 109.47277 * 59.99916 * 3 2 1 31 31 H 1.09001 * 109.46749 * 64.15162 * 6 4 3 32 32 H 1.08992 * 109.46938 * 184.14835 * 6 4 3 33 33 H 1.09005 * 109.46931 * 304.15219 * 6 4 3 34 34 H 1.08996 * 109.47249 * 90.65184 * 10 9 7 35 35 H 1.09001 * 109.46939 * 210.64622 * 10 9 7 36 36 H 1.08993 * 109.47346 * 330.64484 * 10 9 7 37 37 H 1.08991 * 112.85383 * 343.67296 * 11 9 7 38 38 H 1.09002 * 113.62009 * 334.56880 * 12 11 9 39 39 H 1.08999 * 113.61619 * 105.47571 * 12 11 9 40 40 H 1.08998 * 113.53896 * 270.81442 * 13 12 11 41 41 H 0.96997 * 119.99997 * 287.40433 * 14 13 12 42 42 H 0.96997 * 120.00359 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.61272 * 254.52651 * 23 11 9 44 44 H 1.09001 * 113.61916 * 25.42618 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0794 0.8332 1.3084 7 6 4.0722 2.8580 -0.1232 8 8 3.2918 3.7850 -0.0734 9 7 5.3888 3.0937 -0.2892 10 6 5.8925 4.4694 -0.2881 11 6 6.3162 1.9742 -0.4709 12 6 7.7136 2.2303 0.1176 13 6 8.2798 1.5329 -1.1327 14 7 9.4834 2.1720 -1.6705 15 6 10.7038 1.5692 -1.5208 16 1 10.7790 0.6224 -1.0066 17 6 11.8443 2.1750 -2.0299 18 7 11.7527 3.3291 -2.6561 19 14 13.5089 1.3524 -1.8264 20 1 13.7659 0.4613 -2.9861 21 1 14.5686 2.3903 -1.7553 22 1 13.5158 0.5516 -0.5758 23 6 6.9870 1.9483 -1.8544 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.7780 -0.2129 1.3634 32 1 5.1668 0.9002 1.3411 33 1 3.6562 1.3782 2.1523 34 1 6.1657 4.7554 0.7276 35 1 6.7691 4.5359 -0.9325 36 1 5.1176 5.1404 -0.6586 37 1 5.8869 1.0168 -0.1757 38 1 7.9729 3.2870 0.1833 39 1 7.9032 1.6886 1.0443 40 1 8.3886 0.4544 -1.0179 41 1 9.4158 3.0222 -2.1326 42 1 12.5496 3.7523 -3.0122 43 1 6.5907 1.1792 -2.5174 44 1 7.0471 2.9277 -2.3289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486458320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:03 Heat of formation + Delta-G solvation = -38.503960 kcal Electronic energy + Delta-G solvation = -21062.623749 eV Core-core repulsion = 18014.657596 eV Total energy + Delta-G solvation = -3047.966153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55564 -39.58554 -36.95172 -36.12292 -34.57960 -32.95736 -31.81852 -28.48291 -27.53194 -26.61160 -26.24804 -24.66681 -23.64828 -21.67561 -20.66949 -19.81110 -19.00174 -18.22010 -17.21989 -16.76145 -16.39800 -16.15151 -15.89066 -15.43632 -15.04409 -14.79675 -14.52921 -14.35165 -13.78809 -13.53465 -13.42858 -13.25753 -13.13595 -13.05721 -12.98090 -12.77928 -12.69200 -12.20245 -12.15702 -12.07770 -11.92983 -11.80117 -11.70454 -11.59154 -11.45205 -11.33916 -10.85144 -10.61814 -9.60913 -8.97214 -7.93192 -5.21404 1.49910 1.50693 1.58851 1.59194 2.02618 2.58632 3.39014 3.44433 3.72530 3.78926 3.82811 3.95579 3.99648 4.20291 4.31524 4.32831 4.35774 4.40632 4.46107 4.55543 4.67267 4.68147 4.80310 4.83072 4.91902 4.93290 4.93727 4.97118 5.05148 5.11055 5.15851 5.19380 5.26703 5.33870 5.46319 5.48881 5.53230 5.57707 5.61727 6.28793 6.45330 7.14992 7.35138 8.12107 8.33585 9.30254 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.003553 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.317412 B = 7878.377065 C = 8316.780130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.095 4.095 4 C -0.107 4.107 5 H 0.113 0.887 6 C -0.148 4.148 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.599 5.599 10 C 0.084 3.916 11 C 0.123 3.877 12 C -0.168 4.168 13 C 0.152 3.848 14 N -0.726 5.726 15 C -0.239 4.239 16 H 0.082 0.918 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.300 1.300 22 H -0.267 1.267 23 C -0.158 4.158 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.741 -8.396 7.134 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.133 4.133 4 C -0.128 4.128 5 H 0.131 0.869 6 C -0.205 4.205 7 C 0.300 3.700 8 O -0.469 6.469 9 N -0.329 5.329 10 C -0.059 4.059 11 C 0.020 3.980 12 C -0.209 4.209 13 C 0.042 3.958 14 N -0.363 5.363 15 C -0.371 4.371 16 H 0.100 0.900 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.800 3.200 20 H -0.215 1.215 21 H -0.227 1.227 22 H -0.191 1.191 23 C -0.198 4.198 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.983 -8.033 7.213 21.839 hybrid contribution 1.245 0.775 -0.390 1.518 sum -17.738 -7.258 6.822 20.344 Atomic orbital electron populations 1.21777 0.95703 1.02091 1.01562 1.21581 0.96068 0.95018 1.03160 1.21382 0.92180 0.97916 1.01852 1.21404 0.97743 0.91403 1.02259 0.86900 1.21975 1.01758 1.02448 0.94281 1.21420 0.81358 0.92691 0.74516 1.90636 1.56001 1.47694 1.52550 1.47931 1.06982 1.07439 1.70545 1.21545 0.99745 0.82750 1.01868 1.22850 0.88125 0.90612 0.96416 1.24151 0.94615 1.01766 1.00410 1.21764 0.84680 0.96594 0.92778 1.42570 1.02714 1.24327 1.66714 1.19734 0.85754 1.03023 1.28614 0.89984 1.25561 1.01564 0.98100 1.01809 1.69814 1.28781 1.19029 1.44661 0.85174 0.79713 0.77051 0.78047 1.21540 1.22732 1.19143 1.23838 0.96908 1.01862 0.97217 0.93014 0.93307 0.91621 0.90395 0.91108 0.93190 0.92660 0.88627 0.91279 0.92791 0.92382 0.91157 0.91608 0.83548 0.91379 0.90636 0.89135 0.79634 0.94176 0.89826 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.58 5.69 30.60 0.17 -1.41 16 3 C -0.10 -1.79 3.99 30.60 0.12 -1.67 16 4 C -0.11 -2.01 1.87 -11.54 -0.02 -2.03 16 5 H 0.11 1.76 7.50 -2.39 -0.02 1.74 16 6 C -0.15 -2.18 8.40 71.98 0.60 -1.58 16 7 C 0.51 13.90 6.96 87.65 0.61 14.51 16 8 O -0.59 -20.47 15.54 -3.03 -0.05 -20.52 16 9 N -0.60 -15.88 3.08 -819.67 -2.52 -18.40 16 10 C 0.08 2.34 9.13 127.77 1.17 3.51 16 11 C 0.12 2.96 3.19 45.52 0.15 3.11 16 12 C -0.17 -4.97 7.27 31.18 0.23 -4.74 16 13 C 0.15 5.27 4.48 45.58 0.20 5.48 16 14 N -0.73 -34.56 5.41 -320.15 -1.73 -36.29 16 15 C -0.24 -12.65 9.97 84.03 0.84 -11.82 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -58.60 13.06 21.65 0.28 -58.32 16 19 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C -0.16 -4.56 7.39 31.12 0.23 -4.33 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.84 6.66 -2.39 -0.02 0.82 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 1.11 8.06 -2.39 -0.02 1.09 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 0.96 6.77 -2.39 -0.02 0.94 16 32 H 0.07 1.04 5.68 -2.39 -0.01 1.02 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 2.04 6.42 -2.39 -0.02 2.02 16 36 H 0.07 1.93 7.33 -2.39 -0.02 1.91 16 37 H 0.15 2.63 4.61 -2.39 -0.01 2.62 16 38 H 0.07 2.29 6.47 -2.39 -0.02 2.28 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.94 8.10 -2.39 -0.02 2.92 16 41 H 0.37 19.41 7.92 -92.71 -0.73 18.68 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 2.14 7.25 -2.39 -0.02 2.12 16 Total: -1.00 -66.65 343.89 3.73 -62.92 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.24 Total: 29.80 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.48 Total: -6.15 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -3.97 Total: -113.01 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.65 3.73 -62.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486458320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.418 kcal (2) G-P(sol) polarization free energy of solvation -66.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds