Wall clock time and date at job start Mon Mar 30 2020 00:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 C 1.53008 * 109.47453 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46939 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47362 * 300.00150 * 1 2 3 25 25 H 1.09000 * 109.47266 * 60.00104 * 1 2 3 26 26 H 1.09000 * 109.47362 * 239.99850 * 2 1 3 27 27 H 1.09000 * 109.47266 * 119.99896 * 2 1 3 28 28 H 1.09005 * 109.47229 * 60.00092 * 3 2 1 29 29 H 1.09000 * 109.47597 * 300.00382 * 3 2 1 30 30 H 1.08994 * 109.46434 * 60.00053 * 4 3 2 31 31 H 1.08998 * 109.46500 * 300.00225 * 4 3 2 32 32 H 0.96996 * 120.00286 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 34 34 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 35 35 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 36 36 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 37 37 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 38 38 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 39 39 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 40 40 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 41 41 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 42 42 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 43 43 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 44 44 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2842 3.7852 0.0008 7 7 5.3974 3.1096 0.0014 8 6 5.8857 4.4907 0.0026 9 6 7.4158 4.4908 0.0031 10 6 7.9258 5.9333 0.0037 11 7 9.3907 5.9333 0.0048 12 6 10.0745 5.9331 1.1912 13 1 11.0073 5.3956 1.2767 14 6 9.5688 6.6237 2.2839 15 7 8.7107 7.6051 2.1024 16 14 10.1061 6.1605 4.0119 17 1 11.5770 6.3240 4.1336 18 1 9.4265 7.0422 4.9947 19 1 9.7413 4.7463 4.2812 20 6 10.1241 5.9335 -1.2634 21 6 11.6508 5.8569 -1.1966 22 6 10.9664 7.1677 -1.5922 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9336 0.9286 -0.8891 31 1 3.9329 0.9288 0.8909 32 1 6.0277 2.3723 0.0014 33 1 5.5224 5.0039 0.8930 34 1 5.5223 5.0054 -0.8869 35 1 7.7794 3.9776 -0.8872 36 1 7.7788 3.9763 0.8928 37 1 7.5621 6.4468 0.8937 38 1 7.5627 6.4474 -0.8863 39 1 8.3105 8.0471 2.8675 40 1 9.6305 5.4258 -2.0921 41 1 12.1094 5.8059 -0.2091 42 1 12.1615 5.2990 -1.9816 43 1 11.0273 7.4718 -2.6371 44 1 10.9746 7.9797 -0.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490367220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:30 Heat of formation + Delta-G solvation = -20.597947 kcal Electronic energy + Delta-G solvation = -20231.879455 eV Core-core repulsion = 17184.689765 eV Total energy + Delta-G solvation = -3047.189690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.56154 -37.15390 -35.73458 -35.03744 -33.55570 -31.70080 -30.66325 -29.24024 -25.77320 -24.52401 -23.14387 -21.45639 -21.25868 -20.97090 -20.09439 -19.55955 -16.74397 -16.43560 -16.15115 -15.65794 -15.33347 -15.00673 -14.59164 -14.15037 -13.90350 -13.68443 -13.62864 -12.82668 -12.64674 -12.47185 -12.19117 -11.93375 -11.57387 -11.41450 -11.36586 -11.18507 -11.00190 -10.80622 -10.76084 -10.75909 -10.67075 -10.21472 -10.08226 -9.72099 -9.59586 -9.56313 -9.26729 -8.80187 -8.48164 -6.59696 -5.80663 -3.41831 2.80046 3.33023 3.39522 3.40911 3.41755 4.42461 4.66631 4.71478 4.75481 4.91869 5.08083 5.12437 5.17448 5.31206 5.31305 5.49198 5.61635 5.63029 5.67678 5.72481 5.79473 5.90203 5.93098 6.02619 6.07481 6.11966 6.20378 6.26595 6.39970 6.42542 6.48648 6.65079 6.69225 6.80321 7.02624 7.10592 7.21658 7.66100 7.70585 7.77633 8.40193 8.45100 9.12744 9.76008 10.31708 11.14888 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.003458 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.299558 B = 8095.017087 C = 8871.855868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.142 4.142 5 C 0.505 3.495 6 O -0.546 6.546 7 N -0.728 5.728 8 C 0.120 3.880 9 C -0.144 4.144 10 C 0.149 3.851 11 N -0.552 5.552 12 C -0.259 4.259 13 H 0.065 0.935 14 C 0.011 3.989 15 N -0.883 5.883 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.121 3.879 21 C -0.197 4.197 22 C -0.222 4.222 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.028 0.972 39 H 0.256 0.744 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -13.522 -5.226 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.182 4.182 5 C 0.291 3.709 6 O -0.424 6.424 7 N -0.379 5.379 8 C -0.003 4.003 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.268 5.268 12 C -0.388 4.388 13 H 0.083 0.917 14 C -0.190 4.190 15 N -0.524 5.524 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.209 1.209 20 C 0.012 3.988 21 C -0.235 4.235 22 C -0.263 4.263 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.480 -12.672 -5.078 16.620 hybrid contribution 0.753 -0.510 0.904 1.282 sum -8.727 -13.182 -4.174 16.351 Atomic orbital electron populations 1.21762 0.95801 1.01400 1.02049 1.21552 0.96064 0.96750 1.01906 1.21371 0.92910 0.96382 1.03640 1.21705 0.98027 0.94258 1.04173 1.20734 0.82440 0.91578 0.76107 1.90695 1.55375 1.46633 1.49707 1.46220 1.06851 1.09864 1.74963 1.21439 0.95549 0.81449 1.01905 1.22432 0.91390 1.03168 1.01491 1.20860 0.83210 0.91284 1.02431 1.43406 1.00601 1.83129 0.99691 1.19021 1.07263 1.24911 0.87653 0.91699 1.25130 1.00097 0.94625 0.99129 1.70032 1.32188 1.20291 1.29938 0.86477 0.78415 0.78040 0.84528 1.20708 1.21549 1.20904 1.21219 0.89098 0.98020 0.90495 1.23033 0.97066 1.01411 1.02010 1.23365 1.09762 0.93635 0.99583 0.92887 0.92650 0.92680 0.92056 0.92025 0.91222 0.91255 0.89137 0.89084 0.76785 0.91575 0.92064 0.93251 0.91595 0.88012 0.95390 0.93418 0.89644 0.88513 0.90819 0.91255 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -0.96 5.93 -26.74 -0.16 -1.12 16 3 C -0.11 -1.05 4.50 -26.73 -0.12 -1.17 16 4 C -0.14 -1.37 5.70 -27.88 -0.16 -1.53 16 5 C 0.51 7.19 7.83 -10.99 -0.09 7.10 16 6 O -0.55 -10.09 15.98 5.56 0.09 -10.00 16 7 N -0.73 -10.01 5.56 -60.29 -0.33 -10.35 16 8 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 9 C -0.14 -2.62 5.65 -26.73 -0.15 -2.77 16 10 C 0.15 3.32 5.34 -4.04 -0.02 3.30 16 11 N -0.55 -13.23 2.78 -165.67 -0.46 -13.69 16 12 C -0.26 -6.78 8.63 -15.06 -0.13 -6.91 16 13 H 0.07 1.70 6.55 -52.49 -0.34 1.36 16 14 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 15 N -0.88 -24.78 11.33 55.49 0.63 -24.15 16 16 Si 0.90 21.09 29.61 -169.99 -5.03 16.06 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.12 2.54 6.56 -67.93 -0.45 2.10 16 21 C -0.20 -3.85 9.80 -26.69 -0.26 -4.11 16 22 C -0.22 -4.53 10.36 -26.70 -0.28 -4.81 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 29 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.40 4.39 8.47 -40.82 -0.35 4.04 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 2.60 5.35 -51.93 -0.28 2.32 16 38 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -30.07 358.89 -9.29 -39.36 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.04 Total: 5.85 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.55 Total: -8.49 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.17 Total: -48.19 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.07 -9.29 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490367220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.763 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds