Wall clock time and date at job start Mon Mar 30 2020 00:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 C 1.53008 * 109.47453 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46939 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47362 * 300.00150 * 1 2 3 25 25 H 1.09000 * 109.47266 * 60.00104 * 1 2 3 26 26 H 1.09000 * 109.47362 * 239.99850 * 2 1 3 27 27 H 1.09000 * 109.47266 * 119.99896 * 2 1 3 28 28 H 1.09005 * 109.47229 * 60.00092 * 3 2 1 29 29 H 1.09000 * 109.47597 * 300.00382 * 3 2 1 30 30 H 1.08994 * 109.46434 * 60.00053 * 4 3 2 31 31 H 1.08998 * 109.46500 * 300.00225 * 4 3 2 32 32 H 0.96996 * 120.00286 * 359.97438 * 7 5 4 33 33 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 34 34 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 35 35 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 36 36 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 37 37 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 38 38 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 39 39 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 40 40 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 41 41 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 42 42 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 43 43 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 44 44 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2842 3.7852 0.0008 7 7 5.3974 3.1096 0.0014 8 6 5.8857 4.4907 0.0026 9 6 7.4158 4.4908 0.0031 10 6 7.9258 5.9333 0.0037 11 7 9.3907 5.9333 0.0048 12 6 10.0745 5.9331 1.1912 13 1 11.0073 5.3956 1.2767 14 6 9.5688 6.6237 2.2839 15 7 8.7107 7.6051 2.1024 16 14 10.1061 6.1605 4.0119 17 1 11.5770 6.3240 4.1336 18 1 9.4265 7.0422 4.9947 19 1 9.7413 4.7463 4.2812 20 6 10.1241 5.9335 -1.2634 21 6 11.6508 5.8569 -1.1966 22 6 10.9664 7.1677 -1.5922 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9336 0.9286 -0.8891 31 1 3.9329 0.9288 0.8909 32 1 6.0277 2.3723 0.0014 33 1 5.5224 5.0039 0.8930 34 1 5.5223 5.0054 -0.8869 35 1 7.7794 3.9776 -0.8872 36 1 7.7788 3.9763 0.8928 37 1 7.5621 6.4468 0.8937 38 1 7.5627 6.4474 -0.8863 39 1 8.3105 8.0471 2.8675 40 1 9.6305 5.4258 -2.0921 41 1 12.1094 5.8059 -0.2091 42 1 12.1615 5.2990 -1.9816 43 1 11.0273 7.4718 -2.6371 44 1 10.9746 7.9797 -0.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490367220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:30 Heat of formation + Delta-G solvation = -37.941761 kcal Electronic energy + Delta-G solvation = -20232.631539 eV Core-core repulsion = 17184.689765 eV Total energy + Delta-G solvation = -3047.941774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74006 -38.86630 -36.82501 -36.10919 -35.24686 -33.36223 -31.76485 -30.68739 -27.33342 -25.86619 -24.51127 -23.04435 -22.48505 -22.00513 -21.54436 -21.03512 -18.27393 -17.84533 -17.34679 -17.04253 -16.81224 -16.31657 -16.19371 -15.65426 -15.05705 -14.85369 -14.55538 -14.33766 -13.91439 -13.80055 -13.60005 -13.22446 -13.17802 -12.73231 -12.61632 -12.47399 -12.30001 -12.17808 -12.06078 -12.03759 -11.85327 -11.81799 -11.44772 -11.43167 -11.29642 -10.94140 -10.80044 -10.45852 -10.06933 -8.53835 -7.79201 -5.44878 1.45132 1.47528 1.53833 1.68238 2.26359 2.50215 3.15075 3.41442 3.51271 3.80928 3.95890 4.07636 4.17972 4.26345 4.32223 4.40952 4.46950 4.49031 4.55463 4.60351 4.66245 4.76217 4.79229 4.94471 4.95672 4.96407 5.03696 5.07997 5.12737 5.13699 5.29759 5.36601 5.40534 5.46731 5.48371 5.53829 5.55038 5.68790 5.85807 6.45058 6.61973 7.15249 7.30875 7.86374 8.35726 9.11218 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.003458 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.299558 B = 8095.017087 C = 8871.855868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.131 4.131 5 C 0.500 3.500 6 O -0.596 6.596 7 N -0.718 5.718 8 C 0.132 3.868 9 C -0.120 4.120 10 C 0.147 3.853 11 N -0.569 5.569 12 C -0.257 4.257 13 H 0.063 0.937 14 C -0.039 4.039 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.297 1.297 19 H -0.275 1.275 20 C 0.102 3.898 21 C -0.180 4.180 22 C -0.223 4.223 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.415 0.585 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.250 0.750 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -16.378 -6.376 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.170 4.170 5 C 0.288 3.712 6 O -0.477 6.477 7 N -0.370 5.370 8 C 0.007 3.993 9 C -0.160 4.160 10 C 0.021 3.979 11 N -0.286 5.286 12 C -0.387 4.387 13 H 0.081 0.919 14 C -0.236 4.236 15 N -0.560 5.560 16 Si 0.780 3.220 17 H -0.203 1.203 18 H -0.223 1.223 19 H -0.201 1.201 20 C -0.006 4.006 21 C -0.218 4.218 22 C -0.264 4.264 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.252 0.748 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.786 -15.578 -6.244 18.943 hybrid contribution 0.563 0.411 1.185 1.375 sum -8.223 -15.167 -5.059 17.979 Atomic orbital electron populations 1.21792 0.95873 1.02097 1.01561 1.21518 0.96017 0.95003 1.03103 1.21353 0.93319 0.97744 1.01875 1.21748 0.97495 0.91044 1.06722 1.21623 0.81852 0.93126 0.74566 1.90679 1.56517 1.48602 1.51861 1.46064 1.07384 1.09010 1.74563 1.21078 0.94551 0.83152 1.00493 1.22066 0.91928 1.00178 1.01830 1.20762 0.82818 0.93572 1.00746 1.43619 1.01215 1.83512 1.00282 1.19210 1.06979 1.23749 0.88764 0.91940 1.25784 1.00764 0.94894 1.02200 1.70174 1.33856 1.21695 1.30227 0.85582 0.77959 0.77738 0.80676 1.20277 1.22323 1.20115 1.21560 0.90067 0.98866 0.90113 1.23042 0.95974 1.00731 1.02062 1.23286 1.10125 0.92686 1.00329 0.91558 0.93322 0.93106 0.90625 0.90936 0.93314 0.92906 0.86106 0.86632 0.74782 0.94221 0.92478 0.91066 0.92781 0.91525 0.95341 0.94123 0.86780 0.90755 0.86918 0.88084 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -1.53 5.93 30.59 0.18 -1.35 16 3 C -0.10 -1.96 4.50 30.60 0.14 -1.82 16 4 C -0.13 -2.18 5.70 29.85 0.17 -2.01 16 5 C 0.50 13.69 7.83 87.66 0.69 14.37 16 6 O -0.60 -22.33 15.98 -3.04 -0.05 -22.37 16 7 N -0.72 -18.67 5.56 -463.05 -2.57 -21.24 16 8 C 0.13 4.40 5.67 86.38 0.49 4.89 16 9 C -0.12 -4.25 5.65 30.60 0.17 -4.08 16 10 C 0.15 6.65 5.34 86.38 0.46 7.11 16 11 N -0.57 -27.19 2.78 -678.05 -1.88 -29.07 16 12 C -0.26 -13.52 8.63 84.03 0.73 -12.80 16 13 H 0.06 3.27 6.55 -2.91 -0.02 3.25 16 14 C -0.04 -2.14 4.96 84.86 0.42 -1.71 16 15 N -0.92 -53.21 11.33 21.65 0.25 -52.96 16 16 Si 0.95 43.99 29.61 68.60 2.03 46.02 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 20 C 0.10 4.11 6.56 44.99 0.30 4.40 16 21 C -0.18 -6.61 9.80 30.62 0.30 -6.31 16 22 C -0.22 -8.81 10.36 30.62 0.32 -8.49 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 29 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.42 7.99 8.47 -92.71 -0.79 7.20 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.07 3.55 5.35 -2.39 -0.01 3.53 16 38 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 39 H 0.25 14.20 8.32 -92.71 -0.77 13.42 16 40 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 41 H 0.07 3.08 6.37 -2.39 -0.02 3.06 16 42 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -67.52 358.89 3.01 -64.51 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.17 Total: 24.27 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.07 Total: -9.14 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -4.21 Total: -103.28 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.52 3.01 -64.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490367220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.565 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds