Wall clock time and date at job start Mon Mar 30 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47146 * 54.99480 * 4 3 2 6 6 C 1.53005 * 109.46836 * 295.00188 * 4 3 2 7 7 C 1.50697 * 109.47301 * 175.00426 * 4 3 2 8 8 O 1.21280 * 119.99974 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99850 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99634 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.47048 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47304 * 295.00954 * 11 10 9 13 13 N 1.46511 * 109.46698 * 55.00475 * 11 10 9 14 14 C 1.36932 * 119.99509 * 204.99962 * 13 11 10 15 15 H 1.07995 * 120.00673 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99569 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00172 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00190 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47475 * 89.99557 * 18 16 14 20 20 H 1.48496 * 109.47355 * 210.00410 * 18 16 14 21 21 H 1.48506 * 109.46774 * 330.00015 * 18 16 14 22 22 C 1.52993 * 109.47228 * 174.99961 * 11 10 9 23 23 C 1.53001 * 117.50328 * 248.75255 * 22 11 10 24 24 C 1.53000 * 117.50195 * 180.08998 * 22 11 10 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.08996 * 109.46933 * 60.00052 * 6 4 3 33 33 H 1.09002 * 109.47028 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47335 * 299.99923 * 6 4 3 35 35 H 0.96997 * 120.00076 * 0.02562 * 9 7 4 36 36 H 1.08995 * 109.47807 * 299.99895 * 10 9 7 37 37 H 1.09000 * 109.46806 * 60.00339 * 10 9 7 38 38 H 0.96999 * 119.99699 * 24.99604 * 13 11 10 39 39 H 0.96990 * 120.00262 * 180.02562 * 17 16 14 40 40 H 1.09003 * 115.54603 * 34.42654 * 22 11 10 41 41 H 1.08996 * 117.49811 * 359.97438 * 23 22 11 42 42 H 1.08999 * 117.49823 * 145.02288 * 23 22 11 43 43 H 1.08993 * 117.50258 * 214.98637 * 24 22 11 44 44 H 1.09002 * 117.49539 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 4.0723 2.8580 -0.1231 8 8 3.2842 3.7763 -0.2043 9 7 5.3974 3.1033 -0.1445 10 6 5.8857 4.4792 -0.2654 11 6 7.4158 4.4794 -0.2646 12 1 7.7786 4.1282 0.7014 13 7 7.9046 3.5910 -1.3221 14 6 9.1461 3.0226 -1.2191 15 1 9.7648 3.2287 -0.3583 16 6 9.6091 2.1805 -2.2209 17 7 8.8550 1.9288 -3.2699 18 14 11.3024 1.4044 -2.0802 19 1 11.1926 0.1006 -1.3779 20 1 11.8628 1.1894 -3.4385 21 1 12.1980 2.3064 -1.3123 22 6 7.9258 5.8998 -0.5155 23 6 8.6257 6.1740 -1.8482 24 6 9.4408 6.1099 -0.5541 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.7161 -0.1906 1.3978 33 1 5.1694 0.8328 1.3086 34 1 3.7157 1.4227 2.1499 35 1 6.0277 2.3688 -0.0807 36 1 5.5225 4.9133 -1.1969 37 1 5.5223 5.0689 0.5763 38 1 7.3488 3.4056 -2.0951 39 1 9.1783 1.3401 -3.9696 40 1 7.3174 6.6992 -0.0926 41 1 8.7231 5.3424 -2.5460 42 1 8.4780 7.1541 -2.3018 43 1 9.8291 7.0477 -0.1570 44 1 10.0741 5.2363 -0.4002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490644927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:53 Heat of formation + Delta-G solvation = -27.690974 kcal Electronic energy + Delta-G solvation = -21051.250320 eV Core-core repulsion = 18003.753054 eV Total energy + Delta-G solvation = -3047.497267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.62807 -37.68965 -35.89620 -34.42228 -33.26335 -32.07629 -30.66722 -28.10909 -26.59172 -24.41078 -23.41372 -22.35358 -21.50931 -20.78046 -19.69087 -18.90108 -17.34634 -16.61163 -15.76235 -15.51809 -15.11439 -14.74266 -14.57760 -14.03119 -13.84256 -13.66786 -13.16168 -13.07139 -12.82946 -12.52262 -12.23892 -11.97115 -11.86068 -11.30887 -11.18177 -11.16919 -10.96728 -10.90658 -10.85693 -10.74906 -10.52647 -10.51537 -10.13747 -9.70637 -9.55093 -9.33806 -9.13909 -8.99376 -8.55647 -7.08551 -5.85649 -3.15714 3.03674 3.36843 3.43586 3.44788 3.62808 4.48357 4.62940 4.78900 4.86468 4.92405 5.17298 5.24547 5.33343 5.38281 5.45241 5.56365 5.61163 5.65277 5.74119 5.77848 5.84132 5.84876 5.85528 5.97457 5.99494 6.06118 6.08804 6.09286 6.14278 6.33729 6.38318 6.40890 6.48227 6.65469 6.76602 6.94225 7.02279 7.27355 7.63662 8.01385 8.31541 8.65510 9.43906 9.97955 10.34346 11.35837 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.004787 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.581103 B = 5847.179128 C = 6965.376056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.113 4.113 5 H 0.098 0.902 6 C -0.144 4.144 7 C 0.514 3.486 8 O -0.557 6.557 9 N -0.712 5.712 10 C 0.119 3.881 11 C 0.192 3.808 12 H 0.056 0.944 13 N -0.717 5.717 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.928 5.928 18 Si 0.902 3.098 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.178 4.178 23 C -0.163 4.163 24 C -0.176 4.176 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 -1.039 7.635 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.134 4.134 5 H 0.116 0.884 6 C -0.202 4.202 7 C 0.300 3.700 8 O -0.436 6.436 9 N -0.363 5.363 10 C -0.006 4.006 11 C 0.081 3.919 12 H 0.074 0.926 13 N -0.359 5.359 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.734 3.266 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.199 4.199 23 C -0.200 4.200 24 C -0.213 4.213 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.105 -0.451 7.613 12.660 hybrid contribution 1.245 -0.698 -0.313 1.461 sum -8.860 -1.150 7.300 11.538 Atomic orbital electron populations 1.21759 0.95999 1.01268 1.01860 1.21613 0.95764 0.96947 1.02121 1.21399 0.92620 0.96296 1.03273 1.21325 0.97432 0.94010 1.00624 0.88413 1.21812 1.01575 1.01001 0.95768 1.20591 0.82428 0.91073 0.75919 1.90644 1.55642 1.46552 1.50792 1.46007 1.06851 1.10226 1.73248 1.21554 0.95119 0.82652 1.01264 1.19991 0.89500 0.88792 0.93581 0.92590 1.42471 1.18056 1.53169 1.22185 1.19168 0.92788 1.21159 1.03978 0.91078 1.24705 0.98221 1.00541 0.96947 1.69655 1.36881 1.40719 1.10346 0.86269 0.84303 0.79326 0.76746 1.21786 1.21867 1.20778 1.23070 0.94832 0.99309 1.02719 1.22911 1.03629 1.01809 0.91649 1.22848 0.93895 1.01849 1.02665 0.92976 0.92833 0.92743 0.91801 0.91944 0.91233 0.91571 0.91496 0.91838 0.92377 0.75384 0.91836 0.92046 0.77934 0.93453 0.89667 0.86351 0.91305 0.91048 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.24 5.69 -26.73 -0.15 -1.39 16 3 C -0.10 -1.19 4.03 -26.73 -0.11 -1.30 16 4 C -0.11 -1.46 2.72 -91.77 -0.25 -1.71 16 5 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 6 C -0.14 -1.59 8.84 37.16 0.33 -1.26 16 7 C 0.51 8.49 7.15 -10.99 -0.08 8.42 16 8 O -0.56 -10.93 15.92 5.56 0.09 -10.84 16 9 N -0.71 -11.79 5.28 -60.29 -0.32 -12.10 16 10 C 0.12 2.04 5.22 -4.04 -0.02 2.02 16 11 C 0.19 3.53 2.86 -67.92 -0.19 3.33 16 12 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 13 N -0.72 -15.84 3.08 -53.42 -0.16 -16.00 16 14 C -0.24 -5.93 8.15 -15.06 -0.12 -6.05 16 15 H 0.07 1.74 6.91 -52.49 -0.36 1.38 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 18 Si 0.90 21.17 29.55 -169.99 -5.02 16.14 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.18 -3.11 5.70 -90.62 -0.52 -3.63 16 23 C -0.16 -3.06 9.74 -26.69 -0.26 -3.32 16 24 C -0.18 -3.14 9.87 -26.69 -0.26 -3.41 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.94 7.95 -51.93 -0.41 0.53 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 33 H 0.06 0.72 7.57 -51.93 -0.39 0.32 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.41 6.81 7.56 -40.82 -0.31 6.50 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.39 9.42 7.80 -40.82 -0.32 9.10 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 41 H 0.12 2.66 6.68 -51.93 -0.35 2.31 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.10 2.05 6.22 -51.93 -0.32 1.72 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -27.90 351.49 -8.54 -36.44 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -7.77 Total: 15.99 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.37 Total: -9.57 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.24 Total: -53.46 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.90 -8.54 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490644927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.750 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds