Wall clock time and date at job start Mon Mar 30 2020 00:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47146 * 54.99480 * 4 3 2 6 6 C 1.53005 * 109.46836 * 295.00188 * 4 3 2 7 7 C 1.50697 * 109.47301 * 175.00426 * 4 3 2 8 8 O 1.21280 * 119.99974 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99850 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99634 * 179.97438 * 9 7 4 11 11 C 1.53006 * 109.47048 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47304 * 295.00954 * 11 10 9 13 13 N 1.46511 * 109.46698 * 55.00475 * 11 10 9 14 14 C 1.36932 * 119.99509 * 204.99962 * 13 11 10 15 15 H 1.07995 * 120.00673 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99569 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00172 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00190 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47475 * 89.99557 * 18 16 14 20 20 H 1.48496 * 109.47355 * 210.00410 * 18 16 14 21 21 H 1.48506 * 109.46774 * 330.00015 * 18 16 14 22 22 C 1.52993 * 109.47228 * 174.99961 * 11 10 9 23 23 C 1.53001 * 117.50328 * 248.75255 * 22 11 10 24 24 C 1.53000 * 117.50195 * 180.08998 * 22 11 10 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.08996 * 109.46933 * 60.00052 * 6 4 3 33 33 H 1.09002 * 109.47028 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47335 * 299.99923 * 6 4 3 35 35 H 0.96997 * 120.00076 * 0.02562 * 9 7 4 36 36 H 1.08995 * 109.47807 * 299.99895 * 10 9 7 37 37 H 1.09000 * 109.46806 * 60.00339 * 10 9 7 38 38 H 0.96999 * 119.99699 * 24.99604 * 13 11 10 39 39 H 0.96990 * 120.00262 * 180.02562 * 17 16 14 40 40 H 1.09003 * 115.54603 * 34.42654 * 22 11 10 41 41 H 1.08996 * 117.49811 * 359.97438 * 23 22 11 42 42 H 1.08999 * 117.49823 * 145.02288 * 23 22 11 43 43 H 1.08993 * 117.50258 * 214.98637 * 24 22 11 44 44 H 1.09002 * 117.49539 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 4.0723 2.8580 -0.1231 8 8 3.2842 3.7763 -0.2043 9 7 5.3974 3.1033 -0.1445 10 6 5.8857 4.4792 -0.2654 11 6 7.4158 4.4794 -0.2646 12 1 7.7786 4.1282 0.7014 13 7 7.9046 3.5910 -1.3221 14 6 9.1461 3.0226 -1.2191 15 1 9.7648 3.2287 -0.3583 16 6 9.6091 2.1805 -2.2209 17 7 8.8550 1.9288 -3.2699 18 14 11.3024 1.4044 -2.0802 19 1 11.1926 0.1006 -1.3779 20 1 11.8628 1.1894 -3.4385 21 1 12.1980 2.3064 -1.3123 22 6 7.9258 5.8998 -0.5155 23 6 8.6257 6.1740 -1.8482 24 6 9.4408 6.1099 -0.5541 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.7161 -0.1906 1.3978 33 1 5.1694 0.8328 1.3086 34 1 3.7157 1.4227 2.1499 35 1 6.0277 2.3688 -0.0807 36 1 5.5225 4.9133 -1.1969 37 1 5.5223 5.0689 0.5763 38 1 7.3488 3.4056 -2.0951 39 1 9.1783 1.3401 -3.9696 40 1 7.3174 6.6992 -0.0926 41 1 8.7231 5.3424 -2.5460 42 1 8.4780 7.1541 -2.3018 43 1 9.8291 7.0477 -0.1570 44 1 10.0741 5.2363 -0.4002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490644927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:53 Heat of formation + Delta-G solvation = -43.294429 kcal Electronic energy + Delta-G solvation = -21051.926937 eV Core-core repulsion = 18003.753054 eV Total energy + Delta-G solvation = -3048.173883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95831 -39.20626 -36.91733 -35.87527 -35.05402 -33.14420 -32.26886 -29.72383 -27.48023 -25.87766 -25.01009 -23.63590 -22.94700 -21.84028 -21.01507 -20.32891 -19.18949 -17.94731 -17.10502 -16.76077 -16.51732 -16.32766 -15.90724 -15.45939 -15.25421 -14.88227 -14.53970 -14.45498 -14.11172 -13.64303 -13.38331 -13.11650 -12.91308 -12.85482 -12.71950 -12.65059 -12.57493 -12.12498 -12.12282 -11.95083 -11.82114 -11.70591 -11.58366 -11.38738 -11.03389 -10.95458 -10.66316 -10.56618 -9.96605 -8.98594 -7.87506 -5.15143 1.49913 1.52114 1.58212 1.71137 2.33409 2.59440 3.13620 3.47358 3.75605 3.84860 3.88762 3.98230 4.01743 4.27023 4.32825 4.33538 4.39840 4.43065 4.50750 4.58790 4.63713 4.71863 4.82870 4.91863 4.93465 4.96580 4.98156 5.04389 5.15270 5.18554 5.22690 5.27166 5.32779 5.43108 5.45641 5.52575 5.60220 5.67209 5.68336 6.32386 6.65499 7.30990 7.40967 8.11339 8.37247 9.34916 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.004787 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.581103 B = 5847.179128 C = 6965.376056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.108 4.108 5 H 0.101 0.899 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.591 6.591 9 N -0.711 5.711 10 C 0.127 3.873 11 C 0.194 3.806 12 H 0.061 0.939 13 N -0.720 5.720 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.065 4.065 17 N -0.964 5.964 18 Si 0.957 3.043 19 H -0.289 1.289 20 H -0.305 1.305 21 H -0.274 1.274 22 C -0.169 4.169 23 C -0.174 4.174 24 C -0.169 4.169 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.374 0.626 39 H 0.247 0.753 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -1.006 9.421 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.130 4.130 5 H 0.119 0.881 6 C -0.196 4.196 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.361 5.361 10 C 0.002 3.998 11 C 0.085 3.915 12 H 0.079 0.921 13 N -0.360 5.360 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.615 5.615 18 Si 0.788 3.212 19 H -0.216 1.216 20 H -0.233 1.233 21 H -0.199 1.199 22 C -0.191 4.191 23 C -0.211 4.211 24 C -0.206 4.206 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.247 0.753 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.206 0.794 39 H 0.056 0.944 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.198 -0.401 9.449 13.909 hybrid contribution 1.245 -0.624 -0.826 1.620 sum -8.953 -1.026 8.622 12.472 Atomic orbital electron populations 1.21765 0.95303 1.02138 1.01714 1.21591 0.96375 0.95136 1.02869 1.21359 0.91937 0.97813 1.02018 1.21371 0.97972 0.91632 1.01978 0.88124 1.21800 1.01348 1.02101 0.94352 1.21253 0.81937 0.92290 0.74791 1.90624 1.56294 1.47954 1.52322 1.46023 1.07086 1.09987 1.73045 1.21433 0.94033 0.83265 1.01044 1.20112 0.90245 0.88787 0.92398 0.92148 1.42517 1.17171 1.53705 1.22562 1.19419 0.93277 1.19244 1.03121 0.90592 1.25294 1.01016 1.02181 0.97260 1.69795 1.38322 1.42180 1.11236 0.85387 0.81318 0.78663 0.75861 1.21647 1.23262 1.19881 1.23064 0.95113 0.99179 1.01703 1.22772 1.05290 1.01445 0.91586 1.22836 0.93681 1.02306 1.01753 0.91582 0.92630 0.93323 0.90382 0.91789 0.93234 0.92122 0.89243 0.92135 0.92253 0.75329 0.93440 0.90533 0.79410 0.94409 0.86835 0.90417 0.89174 0.88061 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.12 -2.17 5.69 30.60 0.17 -2.00 16 3 C -0.09 -2.19 4.03 30.60 0.12 -2.07 16 4 C -0.11 -2.72 2.72 -11.54 -0.03 -2.75 16 5 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 6 C -0.14 -2.78 8.84 71.98 0.64 -2.15 16 7 C 0.51 16.69 7.15 87.66 0.63 17.32 16 8 O -0.59 -23.21 15.92 -3.03 -0.05 -23.26 16 9 N -0.71 -23.19 5.28 -463.06 -2.45 -25.63 16 10 C 0.13 4.24 5.22 86.38 0.45 4.69 16 11 C 0.19 6.89 2.86 44.99 0.13 7.02 16 12 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 13 N -0.72 -31.80 3.08 -322.93 -0.99 -32.79 16 14 C -0.22 -10.77 8.15 84.04 0.69 -10.08 16 15 H 0.08 3.64 6.91 -2.91 -0.02 3.62 16 16 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 17 N -0.96 -55.38 13.06 21.65 0.28 -55.09 16 18 Si 0.96 43.80 29.55 68.60 2.03 45.83 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C -0.17 -5.57 5.70 -10.80 -0.06 -5.63 16 23 C -0.17 -6.34 9.74 30.62 0.30 -6.04 16 24 C -0.17 -5.67 9.87 30.62 0.30 -5.37 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.18 6.56 -2.39 -0.02 1.16 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.35 7.95 -2.39 -0.02 1.33 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.41 6.56 -2.39 -0.02 1.39 16 33 H 0.06 1.26 7.57 -2.39 -0.02 1.24 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.41 13.42 7.56 -92.71 -0.70 12.72 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.37 18.57 7.80 -92.71 -0.72 17.84 16 39 H 0.25 14.08 8.31 -92.72 -0.77 13.31 16 40 H 0.11 3.17 8.11 -2.39 -0.02 3.15 16 41 H 0.08 3.54 6.68 -2.39 -0.02 3.52 16 42 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.08 3.05 6.22 -2.39 -0.01 3.03 16 Total: -1.00 -60.15 351.49 2.89 -57.26 By element: Atomic # 1 Polarization: 45.90 SS G_CDS: -0.45 Total: 45.45 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.51 Total: -11.78 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.16 Total: -113.51 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.15 2.89 -57.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490644927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.969 kcal (2) G-P(sol) polarization free energy of solvation -60.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds