Wall clock time and date at job start Mon Mar 30 2020 00:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.50700 * 109.47798 * 185.00026 * 4 3 2 8 8 O 1.21284 * 119.99429 * 359.97438 * 7 4 3 9 9 N 1.34767 * 120.00754 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00614 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47246 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47002 * 65.00618 * 11 10 9 13 13 N 1.46493 * 109.47421 * 305.00218 * 11 10 9 14 14 C 1.36935 * 120.00093 * 154.99899 * 13 11 10 15 15 H 1.07994 * 119.99879 * 0.02562 * 14 13 11 16 16 C 1.38819 * 119.99909 * 179.97438 * 14 13 11 17 17 N 1.31610 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47061 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46945 * 119.99941 * 18 16 14 21 21 H 1.48495 * 109.47048 * 240.00377 * 18 16 14 22 22 C 1.53004 * 109.46780 * 185.00147 * 11 10 9 23 23 C 1.53002 * 117.49491 * 248.74641 * 22 11 10 24 24 C 1.53002 * 117.49721 * 180.08927 * 22 11 10 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08993 * 109.47832 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 34 34 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 35 35 H 0.97003 * 120.00036 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.46682 * 300.00055 * 10 9 7 37 37 H 1.09004 * 109.46722 * 59.99451 * 10 9 7 38 38 H 0.97007 * 120.00091 * 334.99709 * 13 11 10 39 39 H 0.97000 * 120.00314 * 180.02562 * 17 16 14 40 40 H 1.08999 * 115.55272 * 34.42031 * 22 11 10 41 41 H 1.08995 * 117.50533 * 0.02562 * 23 22 11 42 42 H 1.09004 * 117.49416 * 145.02015 * 23 22 11 43 43 H 1.08998 * 117.49860 * 214.97673 * 24 22 11 44 44 H 1.09001 * 117.49919 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0724 2.8580 0.1232 8 8 3.2842 3.7763 0.2035 9 7 5.3973 3.1034 0.1436 10 6 5.8857 4.4794 0.2634 11 6 7.4157 4.4794 0.2629 12 1 7.7787 4.1277 -0.7029 13 7 7.9045 3.5919 1.3209 14 6 9.1460 3.0233 1.2185 15 1 9.7650 3.2295 0.3579 16 6 9.6093 2.1827 2.2214 17 7 8.8551 1.9319 3.2704 18 14 11.3032 1.4076 2.0820 19 1 11.9457 1.8463 0.8171 20 1 12.1383 1.8326 3.2341 21 1 11.1724 -0.0715 2.0843 22 6 7.9258 5.9001 0.5128 23 6 8.6246 6.6138 -0.6461 24 6 9.4408 6.1110 0.5473 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 5.1694 0.8328 -1.3087 33 1 3.7161 -0.1906 -1.3979 34 1 3.7157 1.4227 -2.1499 35 1 6.0277 2.3690 0.0790 36 1 5.5217 5.0687 -0.5782 37 1 5.5230 4.9138 1.1950 38 1 7.3486 3.4070 2.0942 39 1 9.1790 1.3448 3.9714 40 1 7.3179 6.5066 1.1842 41 1 8.7207 6.0716 -1.5867 42 1 8.4767 7.6900 -0.7369 43 1 9.8295 6.8564 1.2410 44 1 10.0741 5.2376 0.3915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490644929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:58 Heat of formation + Delta-G solvation = -30.966759 kcal Electronic energy + Delta-G solvation = -20933.976794 eV Core-core repulsion = 17886.337479 eV Total energy + Delta-G solvation = -3047.639316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.62820 -37.62085 -35.90237 -34.59612 -33.39962 -32.07084 -30.75665 -28.01166 -26.59086 -24.42071 -23.33456 -22.17947 -21.70208 -20.79212 -19.90367 -19.20496 -17.38440 -16.56725 -15.76266 -15.52450 -15.11541 -14.72936 -14.50938 -14.11301 -13.82579 -13.71347 -13.22005 -13.07144 -12.91754 -12.55029 -12.24127 -11.98822 -11.85314 -11.38679 -11.23710 -11.14168 -10.96567 -10.90214 -10.87333 -10.77064 -10.70014 -10.51541 -10.11500 -9.95261 -9.63776 -9.37467 -9.25037 -9.00445 -8.56352 -7.06872 -5.84149 -3.13577 3.03415 3.37190 3.43553 3.45762 3.62155 4.40055 4.57648 4.78933 4.85966 4.92371 5.17196 5.23232 5.24490 5.33629 5.45003 5.50901 5.58299 5.60727 5.65269 5.75601 5.78018 5.84236 5.85451 5.90089 5.96818 6.03301 6.07466 6.08878 6.12536 6.17438 6.33707 6.40836 6.41961 6.53961 6.60712 6.76981 6.94603 6.98677 7.63242 8.00921 8.32752 8.65089 9.45088 9.99569 10.35773 11.37783 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.004842 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.810231 B = 5781.472677 C = 7061.425302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.113 4.113 5 H 0.098 0.902 6 C -0.144 4.144 7 C 0.514 3.486 8 O -0.557 6.557 9 N -0.712 5.712 10 C 0.118 3.882 11 C 0.193 3.807 12 H 0.054 0.946 13 N -0.717 5.717 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.156 4.156 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 -0.806 -8.412 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.134 4.134 5 H 0.116 0.884 6 C -0.202 4.202 7 C 0.300 3.700 8 O -0.436 6.436 9 N -0.363 5.363 10 C -0.006 4.006 11 C 0.083 3.917 12 H 0.072 0.928 13 N -0.358 5.358 14 C -0.368 4.368 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.734 3.266 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.193 4.193 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.115 -0.231 -8.395 13.147 hybrid contribution 1.260 -0.690 0.436 1.501 sum -8.855 -0.921 -7.959 11.942 Atomic orbital electron populations 1.21758 0.95998 1.01269 1.01860 1.21612 0.95764 0.96945 1.02126 1.21396 0.92611 0.96302 1.03280 1.21323 0.97438 0.93995 1.00637 0.88397 1.21812 1.01575 1.01011 0.95767 1.20593 0.82409 0.91089 0.75910 1.90645 1.55634 1.46547 1.50794 1.45998 1.06870 1.10208 1.73266 1.21572 0.95024 0.82707 1.01316 1.20050 0.89658 0.88396 0.93619 0.92778 1.42458 1.18105 1.52851 1.22346 1.19208 0.92870 1.20884 1.03846 0.91090 1.24715 0.98243 1.00684 0.96912 1.69665 1.36778 1.40887 1.10324 0.86197 0.84295 0.78920 0.77233 1.20579 1.21919 1.21916 1.23037 0.95974 0.98684 1.00391 1.22959 1.07487 0.99246 0.93722 1.22781 0.94643 1.02659 0.99235 0.92745 0.92831 0.92976 0.91939 0.91798 0.91563 0.91232 0.91837 0.91484 0.92370 0.75370 0.91827 0.91959 0.78056 0.93524 0.89168 0.89564 0.90102 0.90226 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.24 5.69 -26.73 -0.15 -1.39 16 3 C -0.10 -1.19 4.03 -26.74 -0.11 -1.30 16 4 C -0.11 -1.46 2.72 -91.77 -0.25 -1.71 16 5 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 6 C -0.14 -1.59 8.84 37.16 0.33 -1.26 16 7 C 0.51 8.51 7.15 -10.99 -0.08 8.43 16 8 O -0.56 -10.93 15.92 5.55 0.09 -10.84 16 9 N -0.71 -11.85 5.28 -60.29 -0.32 -12.16 16 10 C 0.12 2.04 5.22 -4.04 -0.02 2.02 16 11 C 0.19 3.58 2.70 -67.93 -0.18 3.39 16 12 H 0.05 1.01 7.84 -51.93 -0.41 0.61 16 13 N -0.72 -16.26 4.54 -53.43 -0.24 -16.50 16 14 C -0.24 -5.97 8.63 -15.06 -0.13 -6.10 16 15 H 0.07 1.76 6.91 -52.49 -0.36 1.39 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 18 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.16 -2.78 5.36 -90.62 -0.49 -3.26 16 23 C -0.20 -2.98 10.18 -26.69 -0.27 -3.25 16 24 C -0.16 -2.76 9.78 -26.69 -0.26 -3.02 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 32 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 33 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.41 6.85 7.56 -40.82 -0.31 6.55 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 41 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -28.76 354.40 -8.60 -37.37 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -7.83 Total: 15.11 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.34 Total: -8.77 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.16 Total: -54.50 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.76 -8.60 -37.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490644929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.399 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds