Wall clock time and date at job start Mon Mar 30 2020 00:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.50700 * 109.47798 * 185.00026 * 4 3 2 8 8 O 1.21284 * 119.99429 * 359.97438 * 7 4 3 9 9 N 1.34767 * 120.00754 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00614 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47246 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47002 * 65.00618 * 11 10 9 13 13 N 1.46493 * 109.47421 * 305.00218 * 11 10 9 14 14 C 1.36935 * 120.00093 * 154.99899 * 13 11 10 15 15 H 1.07994 * 119.99879 * 0.02562 * 14 13 11 16 16 C 1.38819 * 119.99909 * 179.97438 * 14 13 11 17 17 N 1.31610 * 119.99956 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47061 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46945 * 119.99941 * 18 16 14 21 21 H 1.48495 * 109.47048 * 240.00377 * 18 16 14 22 22 C 1.53004 * 109.46780 * 185.00147 * 11 10 9 23 23 C 1.53002 * 117.49491 * 248.74641 * 22 11 10 24 24 C 1.53002 * 117.49721 * 180.08927 * 22 11 10 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08993 * 109.47832 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 34 34 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 35 35 H 0.97003 * 120.00036 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.46682 * 300.00055 * 10 9 7 37 37 H 1.09004 * 109.46722 * 59.99451 * 10 9 7 38 38 H 0.97007 * 120.00091 * 334.99709 * 13 11 10 39 39 H 0.97000 * 120.00314 * 180.02562 * 17 16 14 40 40 H 1.08999 * 115.55272 * 34.42031 * 22 11 10 41 41 H 1.08995 * 117.50533 * 0.02562 * 23 22 11 42 42 H 1.09004 * 117.49416 * 145.02015 * 23 22 11 43 43 H 1.08998 * 117.49860 * 214.97673 * 24 22 11 44 44 H 1.09001 * 117.49919 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0724 2.8580 0.1232 8 8 3.2842 3.7763 0.2035 9 7 5.3973 3.1034 0.1436 10 6 5.8857 4.4794 0.2634 11 6 7.4157 4.4794 0.2629 12 1 7.7787 4.1277 -0.7029 13 7 7.9045 3.5919 1.3209 14 6 9.1460 3.0233 1.2185 15 1 9.7650 3.2295 0.3579 16 6 9.6093 2.1827 2.2214 17 7 8.8551 1.9319 3.2704 18 14 11.3032 1.4076 2.0820 19 1 11.9457 1.8463 0.8171 20 1 12.1383 1.8326 3.2341 21 1 11.1724 -0.0715 2.0843 22 6 7.9258 5.9001 0.5128 23 6 8.6246 6.6138 -0.6461 24 6 9.4408 6.1110 0.5473 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 5.1694 0.8328 -1.3087 33 1 3.7161 -0.1906 -1.3979 34 1 3.7157 1.4227 -2.1499 35 1 6.0277 2.3690 0.0790 36 1 5.5217 5.0687 -0.5782 37 1 5.5230 4.9138 1.1950 38 1 7.3486 3.4070 2.0942 39 1 9.1790 1.3448 3.9714 40 1 7.3179 6.5066 1.1842 41 1 8.7207 6.0716 -1.5867 42 1 8.4767 7.6900 -0.7369 43 1 9.8295 6.8564 1.2410 44 1 10.0741 5.2376 0.3915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490644929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:58 Heat of formation + Delta-G solvation = -47.675331 kcal Electronic energy + Delta-G solvation = -20934.701332 eV Core-core repulsion = 17886.337479 eV Total energy + Delta-G solvation = -3048.363854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96007 -39.07814 -36.92349 -36.06095 -35.14753 -33.17295 -32.35273 -29.62996 -27.48117 -25.90958 -24.87942 -23.45442 -23.01953 -21.86544 -21.28281 -20.53759 -19.21614 -17.90699 -17.09960 -16.86625 -16.52848 -16.03628 -15.98210 -15.36215 -15.32650 -14.96266 -14.71107 -14.36855 -14.16532 -13.63631 -13.36637 -13.11811 -12.98229 -12.89837 -12.71859 -12.69511 -12.38783 -12.25763 -12.12194 -11.95050 -11.82193 -11.72516 -11.70692 -11.38750 -11.02001 -11.00002 -10.80117 -10.60079 -9.98007 -8.99293 -7.88086 -5.15696 1.49304 1.51838 1.59285 1.70393 2.32133 2.58722 3.07956 3.48817 3.75318 3.79963 3.84966 3.98193 4.01228 4.17407 4.32217 4.35019 4.39329 4.40056 4.43170 4.56760 4.65387 4.70648 4.82611 4.86592 4.89983 4.91986 4.97506 5.04324 5.15068 5.15841 5.16978 5.24123 5.32775 5.40199 5.45570 5.47386 5.52326 5.58467 5.62784 6.31623 6.64523 7.30055 7.39979 8.10609 8.36460 9.35013 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.004842 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.810231 B = 5781.472677 C = 7061.425302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.108 4.108 5 H 0.101 0.899 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.591 6.591 9 N -0.711 5.711 10 C 0.127 3.873 11 C 0.199 3.801 12 H 0.058 0.942 13 N -0.723 5.723 14 C -0.218 4.218 15 H 0.078 0.922 16 C -0.069 4.069 17 N -0.967 5.967 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.303 1.303 21 H -0.297 1.297 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.173 4.173 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.372 0.628 39 H 0.247 0.753 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 -0.926 -10.268 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.130 4.130 5 H 0.119 0.881 6 C -0.196 4.196 7 C 0.297 3.703 8 O -0.472 6.472 9 N -0.362 5.362 10 C 0.002 3.998 11 C 0.090 3.910 12 H 0.076 0.924 13 N -0.362 5.362 14 C -0.349 4.349 15 H 0.095 0.905 16 C -0.261 4.261 17 N -0.618 5.618 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.231 1.231 21 H -0.224 1.224 22 C -0.196 4.196 23 C -0.199 4.199 24 C -0.210 4.210 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.204 0.796 39 H 0.056 0.944 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.103 -0.329 -10.306 14.436 hybrid contribution 1.221 -0.558 0.959 1.650 sum -8.882 -0.886 -9.348 12.925 Atomic orbital electron populations 1.21764 0.95299 1.02141 1.01713 1.21590 0.96376 0.95119 1.02882 1.21357 0.91915 0.97834 1.02027 1.21372 0.97989 0.91582 1.02010 0.88097 1.21801 1.01353 1.02125 0.94338 1.21267 0.81906 0.92327 0.74774 1.90625 1.56282 1.47960 1.52319 1.46020 1.07118 1.09947 1.73076 1.21447 0.94035 0.83291 1.01041 1.20129 0.90288 0.88365 0.92247 0.92415 1.42564 1.17277 1.53624 1.22779 1.19495 0.93300 1.19032 1.03107 0.90466 1.25348 1.01237 1.02317 0.97220 1.69807 1.38337 1.42404 1.11268 0.85276 0.80899 0.77676 0.77139 1.19094 1.23073 1.22414 1.22934 0.95868 0.98225 1.02594 1.23032 1.03536 1.00578 0.92782 1.22736 0.94240 1.02479 1.01577 0.93329 0.92627 0.91575 0.91781 0.90366 0.92113 0.93235 0.92133 0.89199 0.92244 0.75321 0.90534 0.93502 0.79587 0.94381 0.89028 0.88538 0.87576 0.89607 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.12 -2.18 5.69 30.59 0.17 -2.00 16 3 C -0.09 -2.20 4.03 30.59 0.12 -2.08 16 4 C -0.11 -2.73 2.72 -11.54 -0.03 -2.76 16 5 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 6 C -0.14 -2.79 8.84 71.98 0.64 -2.16 16 7 C 0.51 16.80 7.15 87.66 0.63 17.42 16 8 O -0.59 -23.32 15.92 -3.04 -0.05 -23.37 16 9 N -0.71 -23.45 5.28 -463.07 -2.44 -25.89 16 10 C 0.13 4.30 5.22 86.38 0.45 4.75 16 11 C 0.20 7.16 2.70 44.99 0.12 7.28 16 12 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 13 N -0.72 -32.77 4.54 -322.94 -1.47 -34.23 16 14 C -0.22 -10.88 8.63 84.04 0.73 -10.15 16 15 H 0.08 3.73 6.91 -2.91 -0.02 3.71 16 16 C -0.07 -3.70 5.50 84.87 0.47 -3.23 16 17 N -0.97 -56.29 13.06 21.65 0.28 -56.00 16 18 Si 0.96 44.01 29.55 68.60 2.03 46.04 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 22 C -0.17 -5.84 5.36 -10.79 -0.06 -5.90 16 23 C -0.16 -4.42 10.18 30.62 0.31 -4.11 16 24 C -0.17 -5.86 9.78 30.62 0.30 -5.56 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.18 6.56 -2.39 -0.02 1.17 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.35 7.96 -2.39 -0.02 1.33 16 32 H 0.06 1.26 7.56 -2.39 -0.02 1.24 16 33 H 0.09 1.41 6.56 -2.39 -0.02 1.40 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.41 13.57 7.56 -92.71 -0.70 12.87 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.37 18.87 7.80 -92.70 -0.72 18.14 16 39 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.09 3.05 8.11 -2.39 -0.02 3.03 16 41 H 0.10 2.47 8.05 -2.39 -0.02 2.45 16 42 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 44 H 0.08 3.15 6.23 -2.39 -0.01 3.13 16 Total: -1.00 -61.54 354.40 2.46 -59.07 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -0.45 Total: 44.61 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.56 Total: -10.22 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -3.63 Total: -116.13 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -61.54 2.46 -59.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490644929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.398 kcal (2) G-P(sol) polarization free energy of solvation -61.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds