Wall clock time and date at job start Mon Mar 30 2020 00:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.50700 * 109.47798 * 185.00026 * 4 3 2 8 8 O 1.21284 * 119.99429 * 359.97438 * 7 4 3 9 9 N 1.34767 * 120.00754 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00614 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47246 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47399 * 295.00243 * 11 10 9 13 13 N 1.46500 * 109.47023 * 55.00306 * 11 10 9 14 14 C 1.36933 * 119.99983 * 204.99625 * 13 11 10 15 15 H 1.08002 * 120.00189 * 0.02562 * 14 13 11 16 16 C 1.38815 * 120.00104 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00279 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99935 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46389 * 90.00304 * 18 16 14 20 20 H 1.48499 * 109.47196 * 210.00211 * 18 16 14 21 21 H 1.48495 * 109.47087 * 330.00558 * 18 16 14 22 22 C 1.53005 * 109.46632 * 174.99963 * 11 10 9 23 23 C 1.52997 * 117.49743 * 248.74568 * 22 11 10 24 24 C 1.52998 * 117.49434 * 180.08744 * 22 11 10 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08993 * 109.47832 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 34 34 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 35 35 H 0.97003 * 120.00036 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.46682 * 300.00055 * 10 9 7 37 37 H 1.09004 * 109.46722 * 59.99451 * 10 9 7 38 38 H 0.97003 * 119.99658 * 25.00012 * 13 11 10 39 39 H 0.96997 * 120.00695 * 180.02562 * 17 16 14 40 40 H 1.08992 * 115.55144 * 34.42001 * 22 11 10 41 41 H 1.09001 * 117.50474 * 0.02562 * 23 22 11 42 42 H 1.09000 * 117.49806 * 145.02798 * 23 22 11 43 43 H 1.08997 * 117.50033 * 214.97815 * 24 22 11 44 44 H 1.09004 * 117.50074 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0724 2.8580 0.1232 8 8 3.2842 3.7763 0.2035 9 7 5.3973 3.1034 0.1436 10 6 5.8857 4.4794 0.2634 11 6 7.4157 4.4794 0.2629 12 1 7.7794 3.9658 1.1528 13 7 7.9036 3.7885 -0.9333 14 6 9.1452 3.2109 -0.9318 15 1 9.7646 3.2643 -0.0487 16 6 9.6077 2.5567 -2.0654 17 7 10.8008 2.0011 -2.0638 18 14 8.5361 2.4637 -3.5927 19 1 8.8095 3.6368 -4.4612 20 1 8.8416 1.2152 -4.3365 21 1 7.1056 2.4653 -3.1945 22 6 7.9256 5.9220 0.2623 23 6 8.6245 6.4237 -1.0029 24 6 9.4406 6.1357 0.2596 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 5.1694 0.8328 -1.3087 33 1 3.7161 -0.1906 -1.3979 34 1 3.7157 1.4227 -2.1499 35 1 6.0277 2.3690 0.0790 36 1 5.5217 5.0687 -0.5782 37 1 5.5230 4.9138 1.1950 38 1 7.3471 3.7403 -1.7264 39 1 11.1242 1.5443 -2.8560 40 1 7.3177 6.6357 0.8181 41 1 8.7206 5.7263 -1.8351 42 1 8.4766 7.4677 -1.2792 43 1 9.8293 6.9902 0.8134 44 1 10.0741 5.2486 0.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490644930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:01 Heat of formation + Delta-G solvation = -23.492083 kcal Electronic energy + Delta-G solvation = -21211.980677 eV Core-core repulsion = 18164.665488 eV Total energy + Delta-G solvation = -3047.315189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76563 -37.84005 -35.99015 -34.55647 -33.32145 -32.15085 -31.01940 -28.55282 -26.64409 -24.50700 -23.15242 -22.40771 -21.56548 -20.87007 -19.81314 -19.09815 -17.76076 -16.66430 -15.87487 -15.65768 -15.27958 -14.82784 -14.53228 -14.21558 -13.98228 -13.71355 -13.23867 -13.07034 -12.79060 -12.62358 -12.40908 -12.25659 -11.91909 -11.59275 -11.26372 -11.22887 -11.05448 -11.00183 -10.83063 -10.81278 -10.59790 -10.59435 -10.26302 -9.66091 -9.60242 -9.44194 -9.21513 -9.04560 -8.71382 -7.40626 -5.86588 -3.23497 2.89505 3.28849 3.33462 3.39241 3.49144 4.49153 4.51919 4.70153 4.76075 4.84322 5.10159 5.16414 5.20616 5.25667 5.31330 5.40202 5.50688 5.59631 5.66103 5.69455 5.74368 5.78435 5.81452 5.85326 5.90169 5.95090 5.99850 6.03422 6.08501 6.26933 6.29990 6.32857 6.35835 6.56232 6.62820 6.82461 6.99489 7.11727 7.85927 7.89568 8.31709 8.51039 9.09445 9.81568 10.01064 11.31048 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.005300 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.283391 B = 5282.141730 C = 6390.498718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.111 4.111 5 H 0.095 0.905 6 C -0.148 4.148 7 C 0.513 3.487 8 O -0.554 6.554 9 N -0.716 5.716 10 C 0.116 3.884 11 C 0.198 3.802 12 H 0.065 0.935 13 N -0.743 5.743 14 C -0.245 4.245 15 H 0.093 0.907 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.877 3.123 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.276 1.276 22 C -0.178 4.178 23 C -0.165 4.165 24 C -0.170 4.170 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.238 -1.047 4.458 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.132 4.132 5 H 0.113 0.887 6 C -0.206 4.206 7 C 0.299 3.701 8 O -0.433 6.433 9 N -0.368 5.368 10 C -0.009 4.009 11 C 0.088 3.912 12 H 0.083 0.917 13 N -0.386 5.386 14 C -0.374 4.374 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.576 5.576 18 Si 0.707 3.293 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.202 1.202 22 C -0.200 4.200 23 C -0.202 4.202 24 C -0.207 4.207 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.542 -0.492 4.576 15.253 hybrid contribution -0.200 -0.304 -1.264 1.315 sum -14.742 -0.796 3.312 15.131 Atomic orbital electron populations 1.21758 0.95935 1.01326 1.01883 1.21610 0.95827 0.96866 1.02126 1.21406 0.92515 0.96389 1.03331 1.21324 0.97537 0.93777 1.00592 0.88659 1.21851 1.01944 1.01052 0.95718 1.20640 0.82377 0.91203 0.75883 1.90653 1.55579 1.46531 1.50525 1.46053 1.06944 1.10250 1.73568 1.21615 0.95078 0.82731 1.01474 1.19959 0.89312 0.90350 0.91592 0.91675 1.42842 1.18374 1.65612 1.11761 1.19015 0.91216 1.27143 1.00033 0.88918 1.24631 0.96310 1.00131 0.97466 1.69680 1.17637 1.41035 1.29280 0.86683 0.80405 0.77437 0.84756 1.21124 1.21825 1.20224 1.23007 0.95370 0.98894 1.02704 1.22839 1.04266 0.99857 0.93282 1.22898 0.93626 1.02962 1.01197 0.92780 0.92764 0.92926 0.92036 0.91694 0.91455 0.91269 0.91541 0.91370 0.92242 0.75435 0.91864 0.91558 0.80370 0.92993 0.89360 0.87253 0.91086 0.90856 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C -0.10 -1.13 4.03 -26.74 -0.11 -1.23 16 4 C -0.11 -1.35 2.72 -91.77 -0.25 -1.60 16 5 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 6 C -0.15 -1.76 8.84 37.16 0.33 -1.43 16 7 C 0.51 8.01 7.15 -10.99 -0.08 7.93 16 8 O -0.55 -10.35 15.92 5.55 0.09 -10.26 16 9 N -0.72 -11.16 5.28 -60.29 -0.32 -11.48 16 10 C 0.12 1.86 5.22 -4.04 -0.02 1.83 16 11 C 0.20 3.47 2.86 -67.93 -0.19 3.27 16 12 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 13 N -0.74 -15.44 2.88 -53.42 -0.15 -15.59 16 14 C -0.24 -6.12 8.64 -15.06 -0.13 -6.25 16 15 H 0.09 2.52 7.14 -52.49 -0.37 2.15 16 16 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 17 N -0.93 -27.44 13.97 55.49 0.78 -26.66 16 18 Si 0.88 20.80 27.74 -169.99 -4.71 16.09 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 22 C -0.18 -2.99 5.71 -90.62 -0.52 -3.50 16 23 C -0.17 -2.97 9.74 -26.69 -0.26 -3.23 16 24 C -0.17 -3.02 9.87 -26.69 -0.26 -3.28 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 32 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 33 H 0.07 0.67 6.56 -51.93 -0.34 0.33 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 6.34 7.56 -40.82 -0.31 6.03 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.36 7.74 5.66 -40.82 -0.23 7.50 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 41 H 0.11 2.29 6.68 -51.93 -0.35 1.94 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.11 2.25 6.22 -51.93 -0.32 1.93 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -29.09 348.37 -8.18 -37.27 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.73 Total: 14.89 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.37 Total: -9.50 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.30 Total: -53.74 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.09 -8.18 -37.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490644930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.780 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds