Wall clock time and date at job start Mon Mar 30 2020 00:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47563 * 305.00337 * 4 3 2 6 6 C 1.53001 * 109.47279 * 65.00040 * 4 3 2 7 7 C 1.50700 * 109.47798 * 185.00026 * 4 3 2 8 8 O 1.21284 * 119.99429 * 359.97438 * 7 4 3 9 9 N 1.34767 * 120.00754 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00614 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47246 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47399 * 295.00243 * 11 10 9 13 13 N 1.46500 * 109.47023 * 55.00306 * 11 10 9 14 14 C 1.36933 * 119.99983 * 204.99625 * 13 11 10 15 15 H 1.08002 * 120.00189 * 0.02562 * 14 13 11 16 16 C 1.38815 * 120.00104 * 180.02562 * 14 13 11 17 17 N 1.31616 * 120.00279 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99935 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46389 * 90.00304 * 18 16 14 20 20 H 1.48499 * 109.47196 * 210.00211 * 18 16 14 21 21 H 1.48495 * 109.47087 * 330.00558 * 18 16 14 22 22 C 1.53005 * 109.46632 * 174.99963 * 11 10 9 23 23 C 1.52997 * 117.49743 * 248.74568 * 22 11 10 24 24 C 1.52998 * 117.49434 * 180.08744 * 22 11 10 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.08993 * 109.47832 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46924 * 300.00271 * 6 4 3 34 34 H 1.09000 * 109.47104 * 59.99686 * 6 4 3 35 35 H 0.97003 * 120.00036 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.46682 * 300.00055 * 10 9 7 37 37 H 1.09004 * 109.46722 * 59.99451 * 10 9 7 38 38 H 0.97003 * 119.99658 * 25.00012 * 13 11 10 39 39 H 0.96997 * 120.00695 * 180.02562 * 17 16 14 40 40 H 1.08992 * 115.55144 * 34.42001 * 22 11 10 41 41 H 1.09001 * 117.50474 * 0.02562 * 23 22 11 42 42 H 1.09000 * 117.49806 * 145.02798 * 23 22 11 43 43 H 1.08997 * 117.50033 * 214.97815 * 24 22 11 44 44 H 1.09004 * 117.50074 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0724 2.8580 0.1232 8 8 3.2842 3.7763 0.2035 9 7 5.3973 3.1034 0.1436 10 6 5.8857 4.4794 0.2634 11 6 7.4157 4.4794 0.2629 12 1 7.7794 3.9658 1.1528 13 7 7.9036 3.7885 -0.9333 14 6 9.1452 3.2109 -0.9318 15 1 9.7646 3.2643 -0.0487 16 6 9.6077 2.5567 -2.0654 17 7 10.8008 2.0011 -2.0638 18 14 8.5361 2.4637 -3.5927 19 1 8.8095 3.6368 -4.4612 20 1 8.8416 1.2152 -4.3365 21 1 7.1056 2.4653 -3.1945 22 6 7.9256 5.9220 0.2623 23 6 8.6245 6.4237 -1.0029 24 6 9.4406 6.1357 0.2596 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 5.1694 0.8328 -1.3087 33 1 3.7161 -0.1906 -1.3979 34 1 3.7157 1.4227 -2.1499 35 1 6.0277 2.3690 0.0790 36 1 5.5217 5.0687 -0.5782 37 1 5.5230 4.9138 1.1950 38 1 7.3471 3.7403 -1.7264 39 1 11.1242 1.5443 -2.8560 40 1 7.3177 6.6357 0.8181 41 1 8.7206 5.7263 -1.8351 42 1 8.4766 7.4677 -1.2792 43 1 9.8293 6.9902 0.8134 44 1 10.0741 5.2486 0.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490644930.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:00 Heat of formation + Delta-G solvation = -40.686983 kcal Electronic energy + Delta-G solvation = -21212.726304 eV Core-core repulsion = 18164.665488 eV Total energy + Delta-G solvation = -3048.060816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00994 -39.31838 -36.94288 -35.93620 -35.10375 -33.27589 -32.60915 -30.08582 -27.51572 -25.82047 -24.79765 -23.68292 -22.97636 -21.86097 -21.08473 -20.53097 -19.56376 -17.93183 -17.13957 -16.96604 -16.50470 -16.36585 -15.90644 -15.57909 -15.19580 -14.86690 -14.61081 -14.47420 -14.32223 -13.97395 -13.47522 -13.17717 -13.06735 -12.95548 -12.75342 -12.64771 -12.51178 -12.16427 -12.11371 -12.04749 -11.83190 -11.73436 -11.63052 -11.39387 -11.09159 -10.99316 -10.71777 -10.59749 -10.01983 -9.32206 -7.96443 -5.29345 1.38222 1.41128 1.47236 1.66912 2.28471 2.50432 3.07400 3.36650 3.59823 3.73611 3.82195 3.88664 3.96827 4.22901 4.29666 4.31428 4.37722 4.39484 4.46527 4.53490 4.60508 4.68580 4.79380 4.86338 4.89339 4.94230 4.96024 5.02610 5.13114 5.15285 5.19257 5.22454 5.31432 5.43400 5.44657 5.51492 5.56759 5.60277 5.87730 6.25947 6.60326 7.11801 7.26720 7.85833 8.05017 9.24629 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.005300 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.283391 B = 5282.141730 C = 6390.498718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.105 4.105 5 H 0.116 0.884 6 C -0.146 4.146 7 C 0.510 3.490 8 O -0.586 6.586 9 N -0.717 5.717 10 C 0.124 3.876 11 C 0.198 3.802 12 H 0.062 0.938 13 N -0.739 5.739 14 C -0.207 4.207 15 H 0.065 0.935 16 C -0.053 4.053 17 N -0.981 5.981 18 Si 0.937 3.063 19 H -0.291 1.291 20 H -0.302 1.302 21 H -0.251 1.251 22 C -0.165 4.165 23 C -0.172 4.172 24 C -0.175 4.175 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.411 0.589 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.364 0.636 39 H 0.254 0.746 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 -0.830 4.956 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.132 4.132 4 C -0.127 4.127 5 H 0.134 0.866 6 C -0.203 4.203 7 C 0.298 3.702 8 O -0.467 6.467 9 N -0.368 5.368 10 C 0.000 4.000 11 C 0.089 3.911 12 H 0.080 0.920 13 N -0.382 5.382 14 C -0.338 4.338 15 H 0.083 0.917 16 C -0.244 4.244 17 N -0.632 5.632 18 Si 0.766 3.234 19 H -0.218 1.218 20 H -0.229 1.229 21 H -0.175 1.175 22 C -0.186 4.186 23 C -0.209 4.209 24 C -0.212 4.212 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.197 0.803 39 H 0.063 0.937 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.688 -0.254 5.102 17.453 hybrid contribution 0.459 -0.300 -1.307 1.417 sum -16.229 -0.553 3.795 16.676 Atomic orbital electron populations 1.21767 0.95429 1.02103 1.01690 1.21590 0.96278 0.95162 1.02945 1.21362 0.91899 0.97819 1.02098 1.21372 0.97971 0.91691 1.01616 0.86617 1.21848 1.01185 1.02279 0.94991 1.21249 0.81872 0.92331 0.74775 1.90638 1.56219 1.47868 1.52006 1.46086 1.07200 1.10058 1.73436 1.21491 0.93376 0.83194 1.01955 1.20091 0.90502 0.90613 0.89887 0.92004 1.42765 1.16863 1.65626 1.12987 1.18890 0.91842 1.24674 0.98355 0.91681 1.25230 0.97491 1.01230 1.00474 1.69842 1.19936 1.43518 1.29912 0.85691 0.80214 0.76359 0.81127 1.21825 1.22925 1.17525 1.23016 0.94925 0.98606 1.02035 1.22794 1.04972 1.00638 0.92473 1.22820 0.93941 1.02561 1.01864 0.92924 0.93093 0.91655 0.91027 0.90984 0.92866 0.92385 0.92605 0.88975 0.93219 0.75299 0.92487 0.90078 0.80284 0.93682 0.86140 0.90492 0.88506 0.88135 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -1.92 5.69 30.59 0.17 -1.75 16 3 C -0.09 -1.98 4.03 30.59 0.12 -1.86 16 4 C -0.11 -2.35 2.72 -11.54 -0.03 -2.38 16 5 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 6 C -0.15 -3.13 8.84 71.98 0.64 -2.49 16 7 C 0.51 15.09 7.15 87.66 0.63 15.71 16 8 O -0.59 -21.17 15.92 -3.04 -0.05 -21.22 16 9 N -0.72 -21.04 5.28 -463.07 -2.45 -23.49 16 10 C 0.12 3.72 5.22 86.38 0.45 4.17 16 11 C 0.20 6.61 2.86 44.99 0.13 6.74 16 12 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 13 N -0.74 -30.12 2.88 -322.94 -0.93 -31.05 16 14 C -0.21 -10.46 8.64 84.03 0.73 -9.73 16 15 H 0.07 3.65 7.14 -2.91 -0.02 3.63 16 16 C -0.05 -2.88 5.50 84.86 0.47 -2.41 16 17 N -0.98 -59.73 13.97 21.65 0.30 -59.42 16 18 Si 0.94 43.33 27.74 68.60 1.90 45.23 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 22 C -0.16 -5.13 5.71 -10.79 -0.06 -5.19 16 23 C -0.17 -5.89 9.74 30.62 0.30 -5.59 16 24 C -0.17 -5.99 9.87 30.62 0.30 -5.69 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.04 6.56 -2.39 -0.02 1.03 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 32 H 0.05 1.32 7.56 -2.39 -0.02 1.30 16 33 H 0.09 1.53 6.56 -2.39 -0.02 1.52 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.41 12.00 7.56 -92.71 -0.70 11.30 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.36 14.95 5.66 -92.71 -0.52 14.43 16 39 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.12 3.07 8.11 -2.39 -0.02 3.06 16 41 H 0.08 3.18 6.68 -2.39 -0.02 3.16 16 42 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.07 3.03 6.22 -2.38 -0.01 3.02 16 Total: -1.00 -63.78 348.37 3.03 -60.75 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.31 Total: 41.18 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 4.55 Total: -11.98 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -3.07 Total: -113.96 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.90 Total: 45.23 kcal Total: -63.78 3.03 -60.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490644930.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.065 kcal (2) G-P(sol) polarization free energy of solvation -63.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds