Wall clock time and date at job start Mon Mar 30 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00337 * 2 1 4 4 H 1.07996 * 119.99951 * 203.04655 * 3 2 1 5 5 C 1.38811 * 119.99708 * 23.04144 * 3 2 1 6 6 N 1.31624 * 120.00308 * 12.93855 * 5 3 2 7 7 Si 1.86801 * 120.00097 * 192.94018 * 5 3 2 8 8 H 1.48508 * 109.46916 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47209 * 119.99921 * 7 5 3 10 10 H 1.48500 * 109.47261 * 240.00225 * 7 5 3 11 11 C 1.46501 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47357 * 89.99892 * 11 2 1 13 13 N 1.46492 * 109.47244 * 180.02562 * 12 11 2 14 14 C 1.34785 * 119.99981 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99695 * 180.27377 * 14 13 12 17 17 C 1.53003 * 109.46825 * 179.72191 * 16 14 13 18 18 C 1.52995 * 109.47248 * 300.00166 * 17 16 14 19 19 C 1.53006 * 109.46898 * 60.00018 * 17 16 14 20 20 C 1.52994 * 109.47270 * 179.97438 * 17 16 14 21 21 C 1.52995 * 117.50032 * 248.74747 * 20 17 16 22 22 C 1.52999 * 117.50232 * 180.08656 * 20 17 16 23 23 H 1.09000 * 109.47225 * 275.12585 * 1 2 3 24 24 H 1.09007 * 109.46708 * 35.12471 * 1 2 3 25 25 H 1.08998 * 109.47009 * 155.12258 * 1 2 3 26 26 H 0.96993 * 119.99958 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46989 * 330.00177 * 11 2 1 28 28 H 1.08996 * 109.47302 * 210.00646 * 11 2 1 29 29 H 1.09000 * 109.46838 * 60.00192 * 12 11 2 30 30 H 1.09006 * 109.47021 * 300.00680 * 12 11 2 31 31 H 0.97004 * 120.00361 * 359.97438 * 13 12 11 32 32 H 1.09000 * 109.47019 * 299.72117 * 16 14 13 33 33 H 1.08990 * 109.47198 * 59.72601 * 16 14 13 34 34 H 1.09001 * 109.47396 * 59.99471 * 18 17 16 35 35 H 1.09003 * 109.47348 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.47043 * 300.00087 * 18 17 16 37 37 H 1.09000 * 109.47361 * 59.99820 * 19 17 16 38 38 H 1.09003 * 109.46927 * 180.02562 * 19 17 16 39 39 H 1.09003 * 109.46991 * 299.99437 * 19 17 16 40 40 H 1.08999 * 115.55058 * 34.42020 * 20 17 16 41 41 H 1.08999 * 117.50449 * 0.02562 * 21 20 17 42 42 H 1.09003 * 117.49829 * 145.01997 * 21 20 17 43 43 H 1.08997 * 117.50193 * 214.98150 * 22 20 17 44 44 H 1.09010 * 117.49414 * 0.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5388 2.3401 0.4705 6 7 0.4118 2.2598 1.1459 7 14 2.3158 4.0074 0.1453 8 1 3.5699 3.8263 -0.6292 9 1 1.3715 4.8507 -0.6309 10 1 2.6241 4.6704 1.4377 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 3.5218 -3.5640 -2.6081 15 8 3.2189 -3.0391 -3.6587 16 6 4.2694 -4.8725 -2.6074 17 6 4.5200 -5.3174 -4.0497 18 6 3.1812 -5.4952 -4.7686 19 6 5.3506 -4.2558 -4.7738 20 6 5.2795 -6.6455 -4.0492 21 6 6.7273 -6.6316 -4.5437 22 6 5.6296 -7.2597 -5.4060 23 1 -0.3634 0.0918 1.0236 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0148 3.0662 1.4750 27 1 1.6084 -2.0281 0.5147 28 1 3.1498 -1.1382 0.5144 29 1 3.0416 -0.9517 -1.9558 30 1 1.5001 -1.8416 -1.9555 31 1 3.4271 -3.3997 -0.6009 32 1 5.2232 -4.7458 -2.0953 33 1 3.6777 -5.6287 -2.0917 34 1 2.6404 -4.5488 -4.7690 35 1 3.3598 -5.8117 -5.7963 36 1 2.5895 -6.2515 -4.2527 37 1 6.3044 -4.1290 -4.2617 38 1 5.5288 -4.5725 -5.8015 39 1 4.8098 -3.3094 -4.7743 40 1 5.0318 -7.3283 -3.2365 41 1 7.1389 -5.6762 -4.8691 42 1 7.4320 -7.3056 -4.0566 43 1 5.6126 -8.3466 -5.4859 44 1 5.3192 -6.7173 -6.2992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492244643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:11 Heat of formation + Delta-G solvation = 1.121191 kcal Electronic energy + Delta-G solvation = -20768.686558 eV Core-core repulsion = 17722.438680 eV Total energy + Delta-G solvation = -3046.247878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22077 -38.33192 -36.08546 -34.26154 -33.51724 -31.38114 -29.07380 -27.34153 -27.15121 -25.84260 -23.88282 -22.82442 -22.39673 -20.67378 -20.07521 -18.46465 -17.01620 -16.64104 -16.11064 -15.51154 -15.42313 -14.78146 -14.63378 -14.11270 -13.77535 -13.52654 -13.35323 -13.20381 -12.60307 -12.48044 -12.26345 -11.87598 -11.72265 -11.40428 -11.17699 -11.12484 -11.05250 -10.87831 -10.86048 -10.79331 -10.57635 -10.41563 -10.32446 -10.00279 -9.92931 -9.91982 -9.28744 -8.64190 -8.56452 -6.79805 -5.74676 -3.22785 2.87379 3.37329 3.41821 3.45730 3.48411 3.65091 4.46333 4.52615 4.59190 4.74520 4.84573 5.01829 5.09168 5.24258 5.38265 5.40457 5.43894 5.50595 5.62741 5.64621 5.68822 5.78680 5.82630 5.87786 5.93061 5.94864 6.02244 6.09533 6.22370 6.26558 6.46464 6.49662 6.65490 6.69702 6.79139 6.93632 7.36037 7.70573 7.79800 7.80254 8.36763 8.52692 9.20840 9.83304 10.31422 11.30202 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037938 B = 0.003208 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.874970 B = 8726.358844 C = 9034.766096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.726 5.726 14 C 0.508 3.492 15 O -0.536 6.536 16 C -0.131 4.131 17 C -0.013 4.013 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.143 4.143 21 C -0.186 4.186 22 C -0.178 4.178 23 H 0.033 0.967 24 H 0.042 0.958 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 -18.789 -7.829 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.377 5.377 14 C 0.294 3.706 15 O -0.414 6.414 16 C -0.171 4.171 17 C -0.014 4.014 18 C -0.208 4.208 19 C -0.214 4.214 20 C -0.161 4.161 21 C -0.223 4.223 22 C -0.215 4.215 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.649 -18.226 -8.490 21.888 hybrid contribution 0.489 0.638 0.346 0.875 sum 9.138 -17.588 -8.144 21.428 Atomic orbital electron populations 1.20835 0.82336 0.95586 0.99599 1.43795 1.01948 1.00350 1.85990 1.19235 0.98357 0.85511 1.35681 0.91304 1.25037 0.97843 0.98628 0.98045 1.70081 1.19418 1.27186 1.38454 0.86171 0.78645 0.84151 0.77496 1.20240 1.21529 1.21694 1.20839 0.96659 0.89123 0.91870 1.22381 0.95608 0.83227 1.01899 1.46159 1.58230 1.25148 1.08144 1.20595 0.79578 0.86506 0.83902 1.90570 1.54666 1.65374 1.30822 1.21739 1.01248 0.95393 0.98703 1.19731 0.95720 0.92485 0.93442 1.22078 0.96062 1.03362 0.99261 1.22232 0.99315 1.00676 0.99149 1.22372 0.97282 0.98545 0.97904 1.23159 0.91696 1.03041 1.04396 1.22918 1.03820 0.99853 0.94928 0.94880 0.93944 0.98276 0.93741 0.94178 0.93021 0.91676 0.92356 0.77107 0.89084 0.89192 0.89520 0.93211 0.93608 0.93204 0.93223 0.89421 0.88057 0.88061 0.89301 0.89194 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.98 59.85 0.54 4.52 16 2 N -0.60 -15.01 2.92 -181.12 -0.53 -15.54 16 3 C -0.26 -7.12 9.65 -15.06 -0.15 -7.27 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 6 N -0.91 -26.50 10.71 55.49 0.59 -25.90 16 7 Si 0.91 21.98 29.57 -169.99 -5.03 16.96 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 C 0.14 2.83 5.76 -4.04 -0.02 2.80 16 12 C 0.09 1.72 6.00 -4.05 -0.02 1.69 16 13 N -0.73 -10.13 5.56 -60.30 -0.33 -10.47 16 14 C 0.51 7.14 7.24 -10.98 -0.08 7.06 16 15 O -0.54 -9.40 11.35 5.56 0.06 -9.34 16 16 C -0.13 -1.32 4.75 -27.88 -0.13 -1.45 16 17 C -0.01 -0.14 0.62 -154.51 -0.10 -0.23 16 18 C -0.15 -1.73 8.02 37.15 0.30 -1.43 16 19 C -0.16 -1.80 6.77 37.16 0.25 -1.55 16 20 C -0.14 -1.24 5.15 -90.63 -0.47 -1.70 16 21 C -0.19 -1.50 9.57 -26.70 -0.26 -1.76 16 22 C -0.18 -1.45 9.39 -26.70 -0.25 -1.70 16 23 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.24 5.51 -51.93 -0.29 0.95 16 35 H 0.05 0.53 7.29 -51.93 -0.38 0.15 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.53 6.97 -51.93 -0.36 0.16 16 38 H 0.05 0.53 7.07 -51.93 -0.37 0.16 16 39 H 0.09 1.26 5.51 -51.93 -0.29 0.98 16 40 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.10 0.85 5.85 -51.93 -0.30 0.55 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.80 7.07 -51.92 -0.37 0.43 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -30.99 342.28 -8.19 -39.19 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.64 Total: 0.97 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.48 Total: -1.02 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.27 Total: -51.91 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.06 Total: -9.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.99 -8.19 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492244643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.307 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds