Wall clock time and date at job start Mon Mar 30 2020 00:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00337 * 2 1 4 4 H 1.07996 * 119.99951 * 203.04655 * 3 2 1 5 5 C 1.38811 * 119.99708 * 23.04144 * 3 2 1 6 6 N 1.31624 * 120.00308 * 12.93855 * 5 3 2 7 7 Si 1.86801 * 120.00097 * 192.94018 * 5 3 2 8 8 H 1.48508 * 109.46916 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47209 * 119.99921 * 7 5 3 10 10 H 1.48500 * 109.47261 * 240.00225 * 7 5 3 11 11 C 1.46501 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47357 * 89.99892 * 11 2 1 13 13 N 1.46492 * 109.47244 * 180.02562 * 12 11 2 14 14 C 1.34785 * 119.99981 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99929 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99695 * 180.27377 * 14 13 12 17 17 C 1.53003 * 109.46825 * 179.72191 * 16 14 13 18 18 C 1.52995 * 109.47248 * 300.00166 * 17 16 14 19 19 C 1.53006 * 109.46898 * 60.00018 * 17 16 14 20 20 C 1.52994 * 109.47270 * 179.97438 * 17 16 14 21 21 C 1.52995 * 117.50032 * 248.74747 * 20 17 16 22 22 C 1.52999 * 117.50232 * 180.08656 * 20 17 16 23 23 H 1.09000 * 109.47225 * 275.12585 * 1 2 3 24 24 H 1.09007 * 109.46708 * 35.12471 * 1 2 3 25 25 H 1.08998 * 109.47009 * 155.12258 * 1 2 3 26 26 H 0.96993 * 119.99958 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46989 * 330.00177 * 11 2 1 28 28 H 1.08996 * 109.47302 * 210.00646 * 11 2 1 29 29 H 1.09000 * 109.46838 * 60.00192 * 12 11 2 30 30 H 1.09006 * 109.47021 * 300.00680 * 12 11 2 31 31 H 0.97004 * 120.00361 * 359.97438 * 13 12 11 32 32 H 1.09000 * 109.47019 * 299.72117 * 16 14 13 33 33 H 1.08990 * 109.47198 * 59.72601 * 16 14 13 34 34 H 1.09001 * 109.47396 * 59.99471 * 18 17 16 35 35 H 1.09003 * 109.47348 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.47043 * 300.00087 * 18 17 16 37 37 H 1.09000 * 109.47361 * 59.99820 * 19 17 16 38 38 H 1.09003 * 109.46927 * 180.02562 * 19 17 16 39 39 H 1.09003 * 109.46991 * 299.99437 * 19 17 16 40 40 H 1.08999 * 115.55058 * 34.42020 * 20 17 16 41 41 H 1.08999 * 117.50449 * 0.02562 * 21 20 17 42 42 H 1.09003 * 117.49829 * 145.01997 * 21 20 17 43 43 H 1.08997 * 117.50193 * 214.98150 * 22 20 17 44 44 H 1.09010 * 117.49414 * 0.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2231 -0.3661 5 6 1.5388 2.3401 0.4705 6 7 0.4118 2.2598 1.1459 7 14 2.3158 4.0074 0.1453 8 1 3.5699 3.8263 -0.6292 9 1 1.3715 4.8507 -0.6309 10 1 2.6241 4.6704 1.4377 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 3.5218 -3.5640 -2.6081 15 8 3.2189 -3.0391 -3.6587 16 6 4.2694 -4.8725 -2.6074 17 6 4.5200 -5.3174 -4.0497 18 6 3.1812 -5.4952 -4.7686 19 6 5.3506 -4.2558 -4.7738 20 6 5.2795 -6.6455 -4.0492 21 6 6.7273 -6.6316 -4.5437 22 6 5.6296 -7.2597 -5.4060 23 1 -0.3634 0.0918 1.0236 24 1 -0.3633 0.8406 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0148 3.0662 1.4750 27 1 1.6084 -2.0281 0.5147 28 1 3.1498 -1.1382 0.5144 29 1 3.0416 -0.9517 -1.9558 30 1 1.5001 -1.8416 -1.9555 31 1 3.4271 -3.3997 -0.6009 32 1 5.2232 -4.7458 -2.0953 33 1 3.6777 -5.6287 -2.0917 34 1 2.6404 -4.5488 -4.7690 35 1 3.3598 -5.8117 -5.7963 36 1 2.5895 -6.2515 -4.2527 37 1 6.3044 -4.1290 -4.2617 38 1 5.5288 -4.5725 -5.8015 39 1 4.8098 -3.3094 -4.7743 40 1 5.0318 -7.3283 -3.2365 41 1 7.1389 -5.6762 -4.8691 42 1 7.4320 -7.3056 -4.0566 43 1 5.6126 -8.3466 -5.4859 44 1 5.3192 -6.7173 -6.2992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492244643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:11 Heat of formation + Delta-G solvation = -17.571684 kcal Electronic energy + Delta-G solvation = -20769.497142 eV Core-core repulsion = 17722.438680 eV Total energy + Delta-G solvation = -3047.058462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24147 -39.24970 -37.81749 -35.71900 -34.38332 -33.30374 -30.46499 -28.42786 -28.24305 -27.88720 -25.19245 -24.04790 -23.00456 -22.36219 -21.31213 -19.26566 -18.77659 -17.94218 -17.12830 -16.87945 -16.62860 -16.32095 -15.66973 -15.56958 -15.15508 -14.85729 -14.45674 -14.44572 -14.21832 -14.08429 -13.29523 -13.08249 -12.80874 -12.78144 -12.65871 -12.52690 -12.46154 -12.22357 -12.12371 -11.97686 -11.95390 -11.86167 -11.71807 -11.62181 -11.08058 -10.70740 -10.69221 -10.40421 -9.93328 -8.84126 -7.86072 -5.36400 1.44604 1.46805 1.56879 1.77144 2.26079 2.53022 2.99374 3.28032 3.66486 3.75747 3.85513 4.03667 4.13563 4.23864 4.25855 4.32463 4.34093 4.44742 4.63924 4.67989 4.71187 4.80731 4.83671 4.86343 4.89899 5.05710 5.07044 5.12522 5.15348 5.16809 5.20916 5.31943 5.35624 5.45183 5.50450 5.56932 5.60938 5.68351 5.74178 6.30202 6.71314 7.11802 7.43464 7.82517 8.25261 9.17256 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037938 B = 0.003208 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.874970 B = 8726.358844 C = 9034.766096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.266 4.266 4 H 0.069 0.931 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.268 1.268 9 H -0.292 1.292 10 H -0.288 1.288 11 C 0.147 3.853 12 C 0.118 3.882 13 N -0.717 5.717 14 C 0.503 3.497 15 O -0.574 6.574 16 C -0.122 4.122 17 C -0.013 4.013 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.184 4.184 22 C -0.181 4.181 23 H 0.012 0.988 24 H 0.013 0.987 25 H 0.031 0.969 26 H 0.249 0.751 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.414 0.586 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.605 -20.953 -7.504 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.396 4.396 4 H 0.087 0.913 5 C -0.247 4.247 6 N -0.583 5.583 7 Si 0.796 3.204 8 H -0.193 1.193 9 H -0.219 1.219 10 H -0.215 1.215 11 C 0.020 3.980 12 C -0.010 4.010 13 N -0.369 5.369 14 C 0.291 3.709 15 O -0.454 6.454 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.205 4.205 19 C -0.210 4.210 20 C -0.160 4.160 21 C -0.220 4.220 22 C -0.218 4.218 23 H 0.030 0.970 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.251 0.749 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.279 -20.442 -8.157 24.291 hybrid contribution 0.010 1.239 0.176 1.252 sum 10.289 -19.203 -7.981 23.201 Atomic orbital electron populations 1.20590 0.82613 0.95938 0.97956 1.44042 1.02243 1.01631 1.86187 1.19525 0.98471 0.86825 1.34796 0.91285 1.25791 0.98595 1.01890 0.98399 1.70225 1.20723 1.27667 1.39678 0.85197 0.77963 0.80012 0.77226 1.19278 1.21870 1.21472 1.20955 0.96746 0.87512 0.92797 1.21761 0.94719 0.84475 1.00017 1.45960 1.57834 1.23719 1.09430 1.21395 0.79016 0.87501 0.82975 1.90588 1.55985 1.66596 1.32253 1.21779 1.02040 0.93259 0.99033 1.19711 0.95072 0.93248 0.93315 1.22010 0.96656 1.01877 0.99938 1.22164 0.99465 0.99539 0.99838 1.22307 0.97408 0.97573 0.98757 1.23201 0.91641 1.03050 1.04145 1.22973 1.03804 1.00563 0.94428 0.97015 0.96857 0.95066 0.94146 0.91756 0.92373 0.94710 0.94102 0.74904 0.86806 0.86435 0.92704 0.92996 0.92473 0.92261 0.92989 0.92742 0.86361 0.88726 0.87886 0.87903 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.68 8.98 127.77 1.15 9.82 16 2 N -0.62 -30.97 2.92 -726.94 -2.12 -33.09 16 3 C -0.27 -14.72 9.65 84.03 0.81 -13.91 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -2.91 5.10 84.86 0.43 -2.48 16 6 N -0.94 -55.64 10.71 21.65 0.23 -55.41 16 7 Si 0.97 45.58 29.57 68.60 2.03 47.61 16 8 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 11 C 0.15 5.59 5.76 86.38 0.50 6.09 16 12 C 0.12 4.20 6.00 86.38 0.52 4.72 16 13 N -0.72 -18.77 5.56 -463.06 -2.57 -21.34 16 14 C 0.50 13.50 7.24 87.66 0.63 14.13 16 15 O -0.57 -20.40 11.35 -3.03 -0.03 -20.43 16 16 C -0.12 -2.09 4.75 29.85 0.14 -1.95 16 17 C -0.01 -0.24 0.62 -52.18 -0.03 -0.28 16 18 C -0.15 -3.24 8.02 71.98 0.58 -2.67 16 19 C -0.15 -3.41 6.77 71.98 0.49 -2.92 16 20 C -0.14 -2.01 5.15 -10.80 -0.06 -2.06 16 21 C -0.18 -2.44 9.57 30.62 0.29 -2.15 16 22 C -0.18 -2.49 9.39 30.62 0.29 -2.20 16 23 H 0.01 0.62 7.34 -2.39 -0.02 0.61 16 24 H 0.01 0.70 7.34 -2.38 -0.02 0.68 16 25 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 26 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 27 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.41 7.77 8.47 -92.70 -0.79 6.98 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.58 5.51 -2.39 -0.01 1.57 16 35 H 0.05 1.08 7.29 -2.39 -0.02 1.06 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.17 6.97 -2.39 -0.02 1.15 16 38 H 0.05 1.09 7.07 -2.39 -0.02 1.07 16 39 H 0.05 1.60 5.51 -2.39 -0.01 1.59 16 40 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 41 H 0.09 1.39 5.85 -2.39 -0.01 1.37 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.32 7.07 -2.38 -0.02 1.31 16 Total: -1.00 -68.34 342.28 3.46 -64.89 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.19 Total: 13.62 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.74 Total: 4.16 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -4.46 Total: -109.84 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.03 Total: -20.43 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.34 3.46 -64.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492244643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.317 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds