Wall clock time and date at job start Mon Mar 30 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 C 1.52998 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46936 * 55.00048 * 4 3 2 6 6 C 1.52993 * 109.47146 * 294.99801 * 4 3 2 7 7 C 1.50700 * 109.47070 * 174.99439 * 4 3 2 8 8 O 1.21284 * 120.00077 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99982 * 180.02562 * 7 4 3 10 10 C 1.46501 * 120.00022 * 180.02562 * 9 7 4 11 11 C 1.52998 * 109.47109 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47258 * 180.02562 * 11 10 9 13 13 C 1.36940 * 120.00280 * 270.00129 * 12 11 10 14 14 H 1.07999 * 119.99813 * 140.53639 * 13 12 11 15 15 C 1.38806 * 119.99806 * 320.53763 * 13 12 11 16 16 N 1.31623 * 120.00162 * 340.27266 * 15 13 12 17 17 Si 1.86801 * 120.00037 * 160.27558 * 15 13 12 18 18 H 1.48498 * 109.46796 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47043 * 119.99696 * 17 15 13 20 20 H 1.48500 * 109.47159 * 239.99901 * 17 15 13 21 21 C 1.46506 * 119.99782 * 90.00044 * 12 11 10 22 22 C 1.53001 * 117.49746 * 183.29033 * 21 12 11 23 23 C 1.52999 * 60.00064 * 252.51029 * 22 21 12 24 24 H 1.09008 * 109.47490 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47664 * 300.00236 * 1 2 3 26 26 H 1.08996 * 109.47462 * 60.00525 * 1 2 3 27 27 H 1.09010 * 109.46923 * 119.99499 * 2 1 3 28 28 H 1.08998 * 109.47262 * 239.99657 * 2 1 3 29 29 H 1.09002 * 109.47043 * 299.99709 * 3 2 1 30 30 H 1.08998 * 109.47274 * 59.99664 * 3 2 1 31 31 H 1.08999 * 109.47507 * 299.99527 * 6 4 3 32 32 H 1.09006 * 109.47348 * 60.00037 * 6 4 3 33 33 H 1.09007 * 109.47189 * 180.02562 * 6 4 3 34 34 H 0.97007 * 119.99757 * 359.97438 * 9 7 4 35 35 H 1.08994 * 109.47175 * 300.00176 * 10 9 7 36 36 H 1.09005 * 109.46904 * 60.00288 * 10 9 7 37 37 H 1.09008 * 109.47293 * 300.00364 * 11 10 9 38 38 H 1.09003 * 109.47209 * 59.99663 * 11 10 9 39 39 H 0.96996 * 120.00015 * 175.01668 * 16 15 13 40 40 H 1.08997 * 115.55034 * 328.99510 * 21 12 11 41 41 H 1.09009 * 117.50223 * 359.97438 * 22 21 12 42 42 H 1.09001 * 117.50164 * 145.01991 * 22 21 12 43 43 H 1.08993 * 117.50248 * 252.50984 * 23 22 21 44 44 H 1.09009 * 117.51947 * 107.47871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0723 2.8579 -0.1233 8 8 3.2842 3.7762 -0.2038 9 7 5.3974 3.1032 -0.1448 10 6 5.8858 4.4792 -0.2648 11 6 7.4158 4.4792 -0.2642 12 7 7.9041 5.8551 -0.3836 13 6 8.1328 6.3957 -1.6208 14 1 7.8709 7.4249 -1.8172 15 6 8.7012 5.6209 -2.6224 16 7 9.3681 4.5295 -2.3117 17 14 8.5198 6.1271 -4.4114 18 1 7.7306 7.3824 -4.4929 19 1 9.8642 6.3477 -5.0022 20 1 7.8197 5.0533 -5.1611 21 6 8.1479 6.6529 0.8208 22 6 8.5834 8.1070 0.6288 23 6 9.5918 7.0643 1.1154 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.7158 1.4227 2.1498 32 1 3.7160 -0.1907 1.3979 33 1 5.1695 0.8336 1.3089 34 1 6.0277 2.3687 -0.0801 35 1 5.5224 4.9138 -1.1959 36 1 5.5225 5.0683 0.5774 37 1 7.7788 4.0446 0.6672 38 1 7.7794 3.8898 -1.1060 39 1 9.7032 3.9496 -3.0134 40 1 7.5051 6.4280 1.6718 41 1 8.6890 8.4700 -0.3936 42 1 8.2270 8.8391 1.3535 43 1 9.8989 7.1103 2.1602 44 1 10.3605 6.7410 0.4133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493358174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:06 Heat of formation + Delta-G solvation = -18.297652 kcal Electronic energy + Delta-G solvation = -20782.536381 eV Core-core repulsion = 17735.446439 eV Total energy + Delta-G solvation = -3047.089942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59564 -37.13468 -36.00416 -34.67930 -33.23092 -32.08690 -30.70748 -27.65627 -26.67128 -24.66923 -23.60982 -21.78249 -21.29265 -20.88913 -19.84561 -19.45778 -16.87845 -16.11436 -15.76114 -15.53446 -15.37346 -14.76870 -14.60808 -14.05210 -13.89998 -13.59095 -13.36864 -12.78026 -12.64602 -12.40470 -12.29945 -11.97955 -11.91996 -11.55093 -11.30121 -11.05875 -11.03423 -10.89174 -10.76711 -10.70028 -10.59744 -10.32279 -10.14590 -9.84845 -9.63208 -9.41864 -9.24485 -8.56355 -8.46615 -6.60760 -5.85776 -3.52578 3.01532 3.30598 3.40186 3.43739 3.59583 4.40822 4.68631 4.77266 4.83820 4.93509 5.08046 5.15615 5.22067 5.26826 5.31987 5.47848 5.56177 5.68781 5.74390 5.77062 5.87807 5.90478 5.99154 6.02355 6.06294 6.10523 6.21516 6.24571 6.29308 6.33851 6.50288 6.52296 6.62381 6.89573 6.98195 7.07829 7.22866 7.47848 7.75206 7.96572 8.43205 8.63881 9.07973 9.68487 10.26480 11.09487 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.004189 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.540388 B = 6683.094245 C = 7435.166854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.094 0.906 6 C -0.144 4.144 7 C 0.510 3.490 8 O -0.549 6.549 9 N -0.721 5.721 10 C 0.098 3.902 11 C 0.142 3.858 12 N -0.548 5.548 13 C -0.260 4.260 14 H 0.066 0.934 15 C 0.016 3.984 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.287 1.287 21 C 0.119 3.881 22 C -0.194 4.194 23 C -0.219 4.219 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.032 0.968 38 H 0.098 0.902 39 H 0.254 0.746 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 -9.310 6.321 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.112 0.888 6 C -0.202 4.202 7 C 0.295 3.705 8 O -0.427 6.427 9 N -0.371 5.371 10 C -0.027 4.027 11 C 0.015 3.985 12 N -0.265 5.265 13 C -0.390 4.390 14 H 0.083 0.917 15 C -0.185 4.185 16 N -0.525 5.525 17 Si 0.724 3.276 18 H -0.199 1.199 19 H -0.215 1.215 20 H -0.213 1.213 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.260 4.260 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.028 -8.716 6.135 14.635 hybrid contribution 0.398 -0.092 -0.959 1.042 sum -9.630 -8.808 5.176 14.040 Atomic orbital electron populations 1.21762 0.95934 1.01289 1.01974 1.21606 0.95864 0.96900 1.01968 1.21412 0.92572 0.96304 1.03489 1.21345 0.97639 0.94122 1.00329 0.88764 1.21817 1.01305 1.01028 0.96009 1.20607 0.82618 0.90969 0.76298 1.90671 1.55449 1.46530 1.50070 1.46121 1.06573 1.10672 1.73746 1.22305 0.98696 0.80508 1.01198 1.20999 0.87971 0.88038 1.01485 1.43186 1.72350 1.10472 1.00470 1.19094 1.34502 0.98210 0.87177 0.91659 1.25239 0.95507 0.98530 0.99218 1.70064 1.35094 1.15348 1.31986 0.86347 0.77517 0.78503 0.85183 1.19866 1.21506 1.21318 1.21242 0.93762 0.92763 0.91211 1.23023 1.05609 0.92602 1.02021 1.23339 0.96787 1.06448 0.99425 0.92963 0.92753 0.92708 0.91812 0.92076 0.91170 0.91422 0.92190 0.91493 0.92037 0.76984 0.91702 0.93238 0.95002 0.88403 0.93571 0.89581 0.88421 0.90744 0.91248 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.15 0.37 -0.89 16 2 C -0.13 -1.11 5.69 -26.73 -0.15 -1.26 16 3 C -0.10 -1.14 4.03 -26.73 -0.11 -1.25 16 4 C -0.11 -1.33 2.72 -91.78 -0.25 -1.58 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.14 -1.37 8.84 37.15 0.33 -1.05 16 7 C 0.51 8.38 7.15 -10.98 -0.08 8.31 16 8 O -0.55 -11.29 15.92 5.55 0.09 -11.21 16 9 N -0.72 -11.84 5.45 -60.29 -0.33 -12.17 16 10 C 0.10 1.98 6.00 -4.04 -0.02 1.95 16 11 C 0.14 3.11 5.45 -4.05 -0.02 3.09 16 12 N -0.55 -13.21 2.75 -165.66 -0.46 -13.67 16 13 C -0.26 -6.87 8.47 -15.06 -0.13 -7.00 16 14 H 0.07 1.75 6.75 -52.49 -0.35 1.40 16 15 C 0.02 0.42 4.98 -17.43 -0.09 0.34 16 16 N -0.88 -24.24 11.50 55.49 0.64 -23.60 16 17 Si 0.90 21.18 29.60 -169.99 -5.03 16.14 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 22 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 23 C -0.22 -4.45 10.36 -26.73 -0.28 -4.73 16 24 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 6.56 -51.92 -0.34 0.16 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.92 7.96 -51.93 -0.41 0.50 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.52 6.56 -51.93 -0.34 0.17 16 33 H 0.06 0.55 7.56 -51.92 -0.39 0.16 16 34 H 0.40 5.50 7.89 -40.82 -0.32 5.17 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.65 8.07 -51.92 -0.42 0.23 16 38 H 0.10 2.39 5.59 -51.93 -0.29 2.10 16 39 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.10 2.11 6.46 -51.92 -0.34 1.78 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.09 2.14 8.14 -51.92 -0.42 1.72 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -29.82 354.08 -8.73 -38.55 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.84 Total: 6.72 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -1.14 Total: -6.11 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.15 Total: -49.44 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.82 -8.73 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493358174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.256 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds