Wall clock time and date at job start Mon Mar 30 2020 00:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 C 1.52998 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46936 * 55.00048 * 4 3 2 6 6 C 1.52993 * 109.47146 * 294.99801 * 4 3 2 7 7 C 1.50700 * 109.47070 * 174.99439 * 4 3 2 8 8 O 1.21284 * 120.00077 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99982 * 180.02562 * 7 4 3 10 10 C 1.46501 * 120.00022 * 180.02562 * 9 7 4 11 11 C 1.52998 * 109.47109 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47258 * 180.02562 * 11 10 9 13 13 C 1.36940 * 120.00280 * 270.00129 * 12 11 10 14 14 H 1.07999 * 119.99813 * 140.53639 * 13 12 11 15 15 C 1.38806 * 119.99806 * 320.53763 * 13 12 11 16 16 N 1.31623 * 120.00162 * 340.27266 * 15 13 12 17 17 Si 1.86801 * 120.00037 * 160.27558 * 15 13 12 18 18 H 1.48498 * 109.46796 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47043 * 119.99696 * 17 15 13 20 20 H 1.48500 * 109.47159 * 239.99901 * 17 15 13 21 21 C 1.46506 * 119.99782 * 90.00044 * 12 11 10 22 22 C 1.53001 * 117.49746 * 183.29033 * 21 12 11 23 23 C 1.52999 * 60.00064 * 252.51029 * 22 21 12 24 24 H 1.09008 * 109.47490 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47664 * 300.00236 * 1 2 3 26 26 H 1.08996 * 109.47462 * 60.00525 * 1 2 3 27 27 H 1.09010 * 109.46923 * 119.99499 * 2 1 3 28 28 H 1.08998 * 109.47262 * 239.99657 * 2 1 3 29 29 H 1.09002 * 109.47043 * 299.99709 * 3 2 1 30 30 H 1.08998 * 109.47274 * 59.99664 * 3 2 1 31 31 H 1.08999 * 109.47507 * 299.99527 * 6 4 3 32 32 H 1.09006 * 109.47348 * 60.00037 * 6 4 3 33 33 H 1.09007 * 109.47189 * 180.02562 * 6 4 3 34 34 H 0.97007 * 119.99757 * 359.97438 * 9 7 4 35 35 H 1.08994 * 109.47175 * 300.00176 * 10 9 7 36 36 H 1.09005 * 109.46904 * 60.00288 * 10 9 7 37 37 H 1.09008 * 109.47293 * 300.00364 * 11 10 9 38 38 H 1.09003 * 109.47209 * 59.99663 * 11 10 9 39 39 H 0.96996 * 120.00015 * 175.01668 * 16 15 13 40 40 H 1.08997 * 115.55034 * 328.99510 * 21 12 11 41 41 H 1.09009 * 117.50223 * 359.97438 * 22 21 12 42 42 H 1.09001 * 117.50164 * 145.01991 * 22 21 12 43 43 H 1.08993 * 117.50248 * 252.50984 * 23 22 21 44 44 H 1.09009 * 117.51947 * 107.47871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0723 2.8579 -0.1233 8 8 3.2842 3.7762 -0.2038 9 7 5.3974 3.1032 -0.1448 10 6 5.8858 4.4792 -0.2648 11 6 7.4158 4.4792 -0.2642 12 7 7.9041 5.8551 -0.3836 13 6 8.1328 6.3957 -1.6208 14 1 7.8709 7.4249 -1.8172 15 6 8.7012 5.6209 -2.6224 16 7 9.3681 4.5295 -2.3117 17 14 8.5198 6.1271 -4.4114 18 1 7.7306 7.3824 -4.4929 19 1 9.8642 6.3477 -5.0022 20 1 7.8197 5.0533 -5.1611 21 6 8.1479 6.6529 0.8208 22 6 8.5834 8.1070 0.6288 23 6 9.5918 7.0643 1.1154 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.7158 1.4227 2.1498 32 1 3.7160 -0.1907 1.3979 33 1 5.1695 0.8336 1.3089 34 1 6.0277 2.3687 -0.0801 35 1 5.5224 4.9138 -1.1959 36 1 5.5225 5.0683 0.5774 37 1 7.7788 4.0446 0.6672 38 1 7.7794 3.8898 -1.1060 39 1 9.7032 3.9496 -3.0134 40 1 7.5051 6.4280 1.6718 41 1 8.6890 8.4700 -0.3936 42 1 8.2270 8.8391 1.3535 43 1 9.8989 7.1103 2.1602 44 1 10.3605 6.7410 0.4133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493358174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:05 Heat of formation + Delta-G solvation = -35.447313 kcal Electronic energy + Delta-G solvation = -20783.280046 eV Core-core repulsion = 17735.446439 eV Total energy + Delta-G solvation = -3047.833607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93032 -38.85771 -36.99857 -36.23642 -34.98751 -33.15321 -32.37699 -29.34274 -27.47877 -26.44192 -24.80797 -23.32821 -22.87121 -21.94520 -21.58608 -20.71792 -18.42086 -17.74741 -17.23347 -17.08170 -16.66963 -16.29827 -16.01810 -15.62958 -14.96175 -14.85818 -14.56884 -14.45028 -13.89611 -13.76763 -13.43540 -13.26974 -13.11753 -12.95420 -12.71125 -12.65415 -12.50845 -12.16057 -12.10504 -11.95738 -11.82930 -11.71178 -11.66244 -11.38909 -11.36788 -10.96156 -10.68907 -10.53167 -10.01389 -8.55017 -7.84640 -5.55843 1.40176 1.45154 1.54082 1.69189 2.23320 2.48529 3.13140 3.38977 3.52953 3.76644 3.85079 3.99110 4.28727 4.31238 4.35415 4.36785 4.40390 4.44379 4.51572 4.59197 4.68704 4.78888 4.82914 4.92424 4.93949 4.97591 5.03554 5.05262 5.14665 5.21114 5.25440 5.32539 5.33231 5.45712 5.48107 5.53671 5.55010 5.64882 5.72041 6.43058 6.64513 7.11069 7.31781 7.77473 8.29670 9.05923 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.004189 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.540388 B = 6683.094245 C = 7435.166854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.104 4.104 5 H 0.114 0.886 6 C -0.140 4.140 7 C 0.505 3.495 8 O -0.595 6.595 9 N -0.713 5.713 10 C 0.120 3.880 11 C 0.151 3.849 12 N -0.566 5.566 13 C -0.266 4.266 14 H 0.055 0.945 15 C -0.025 4.025 16 N -0.907 5.907 17 Si 0.948 3.052 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.287 1.287 21 C 0.098 3.902 22 C -0.184 4.184 23 C -0.210 4.210 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.029 0.971 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 -10.614 7.474 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.125 4.125 5 H 0.132 0.868 6 C -0.198 4.198 7 C 0.293 3.707 8 O -0.476 6.476 9 N -0.364 5.364 10 C -0.007 4.007 11 C 0.024 3.976 12 N -0.284 5.284 13 C -0.396 4.396 14 H 0.072 0.928 15 C -0.224 4.224 16 N -0.550 5.550 17 Si 0.776 3.224 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.010 4.010 22 C -0.222 4.222 23 C -0.251 4.251 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.389 -10.039 7.304 16.189 hybrid contribution 0.498 0.354 -1.271 1.410 sum -9.892 -9.685 6.033 15.101 Atomic orbital electron populations 1.21781 0.95675 1.02153 1.01542 1.21577 0.96093 0.94809 1.03184 1.21395 0.92393 0.98031 1.01780 1.21396 0.97690 0.90822 1.02574 0.86762 1.21836 1.01829 1.02115 0.93975 1.21545 0.81869 0.92667 0.74665 1.90649 1.56464 1.48497 1.52002 1.45989 1.07254 1.09644 1.73554 1.21783 0.97426 0.82370 0.99090 1.20859 0.88663 0.87027 1.01056 1.43393 1.72945 1.11312 1.00772 1.19175 1.33899 0.97902 0.88641 0.92790 1.25785 0.95724 0.98858 1.01994 1.70143 1.36065 1.16133 1.32630 0.85535 0.77183 0.78049 0.81649 1.19759 1.21507 1.21322 1.21542 0.94899 0.93479 0.91047 1.23032 1.04890 0.92621 1.01683 1.23236 0.95218 1.06176 1.00424 0.91410 0.92970 0.93478 0.90138 0.91185 0.93481 0.92697 0.92977 0.88773 0.91230 0.75211 0.95229 0.93736 0.93482 0.90787 0.93726 0.87225 0.90804 0.87226 0.87866 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.81 5.69 30.59 0.17 -1.63 16 3 C -0.10 -2.15 4.03 30.59 0.12 -2.03 16 4 C -0.10 -2.26 2.72 -11.54 -0.03 -2.29 16 5 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 6 C -0.14 -2.28 8.84 71.98 0.64 -1.64 16 7 C 0.50 16.45 7.15 87.66 0.63 17.08 16 8 O -0.60 -25.01 15.92 -3.04 -0.05 -25.06 16 9 N -0.71 -23.12 5.45 -463.06 -2.52 -25.65 16 10 C 0.12 4.88 6.00 86.38 0.52 5.40 16 11 C 0.15 6.62 5.45 86.38 0.47 7.09 16 12 N -0.57 -27.49 2.75 -678.03 -1.86 -29.36 16 13 C -0.27 -14.30 8.47 84.03 0.71 -13.59 16 14 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 15 C -0.03 -1.36 4.98 84.86 0.42 -0.94 16 16 N -0.91 -50.47 11.50 21.65 0.25 -50.22 16 17 Si 0.95 44.20 29.60 68.60 2.03 46.23 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 21 C 0.10 4.07 6.56 44.99 0.30 4.37 16 22 C -0.18 -7.06 9.80 30.59 0.30 -6.76 16 23 C -0.21 -8.25 10.36 30.59 0.32 -7.93 16 24 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.98 6.56 -2.38 -0.02 0.96 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 1.24 7.96 -2.39 -0.02 1.22 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.06 6.56 -2.38 -0.02 1.04 16 33 H 0.07 1.03 7.56 -2.38 -0.02 1.02 16 34 H 0.41 10.88 7.89 -92.70 -0.73 10.15 16 35 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.05 1.89 8.07 -2.38 -0.02 1.87 16 38 H 0.07 3.67 5.59 -2.39 -0.01 3.65 16 39 H 0.25 13.58 8.32 -92.71 -0.77 12.81 16 40 H 0.11 4.00 8.14 -2.39 -0.02 3.99 16 41 H 0.07 3.20 6.46 -2.38 -0.02 3.18 16 42 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -65.94 354.08 3.35 -62.59 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.23 Total: 25.89 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.28 Total: -4.43 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.14 Total: -105.22 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -65.94 3.35 -62.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493358174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.145 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds