Wall clock time and date at job start Mon Mar 30 2020 00:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47079 * 2 1 4 4 C 1.53000 * 109.47069 * 240.00311 * 2 1 3 5 5 C 1.50701 * 109.47169 * 119.99827 * 2 1 3 6 6 O 1.21273 * 119.99827 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99929 * 179.97438 * 5 2 1 8 8 C 1.46498 * 119.99936 * 180.02562 * 7 5 2 9 9 C 1.52999 * 109.47176 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46947 * 180.02562 * 9 8 7 11 11 H 1.08996 * 110.64188 * 303.30672 * 10 9 8 12 12 C 1.55167 * 110.86767 * 180.02562 * 10 9 8 13 13 C 1.55140 * 101.48205 * 205.89724 * 12 10 9 14 14 N 1.47426 * 104.71884 * 37.29810 * 13 12 10 15 15 C 1.36939 * 125.64553 * 155.81775 * 14 13 12 16 16 H 1.07997 * 119.99728 * 179.41197 * 15 14 13 17 17 C 1.38815 * 119.99845 * 359.69111 * 15 14 13 18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14 20 20 H 1.48493 * 109.47326 * 89.99909 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99659 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99370 * 19 17 15 23 23 C 1.47017 * 108.70306 * 335.54918 * 14 13 12 24 24 H 1.08997 * 109.47106 * 300.00219 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00117 * 1 2 3 26 26 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47073 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47080 * 299.99869 * 3 2 1 29 29 H 1.08997 * 109.47330 * 59.99918 * 3 2 1 30 30 H 1.09001 * 109.46558 * 299.99221 * 4 2 1 31 31 H 1.08998 * 109.47530 * 59.99860 * 4 2 1 32 32 H 1.09000 * 109.47184 * 179.97438 * 4 2 1 33 33 H 0.97003 * 119.99852 * 0.02562 * 7 5 2 34 34 H 1.09000 * 109.46959 * 60.00164 * 8 7 5 35 35 H 1.08997 * 109.46994 * 299.99977 * 8 7 5 36 36 H 1.09000 * 109.47077 * 60.00194 * 9 8 7 37 37 H 1.08997 * 109.47106 * 299.99867 * 9 8 7 38 38 H 1.08997 * 111.00435 * 324.13709 * 12 10 9 39 39 H 1.08997 * 111.00229 * 87.95375 * 12 10 9 40 40 H 1.08994 * 110.49646 * 278.45386 * 13 12 10 41 41 H 1.09000 * 110.33762 * 156.05529 * 13 12 10 42 42 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.87978 * 120.71058 * 23 14 13 44 44 H 1.09004 * 109.88095 * 241.71521 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1716 2.0285 7 7 3.3574 -0.8339 1.4435 8 6 3.8458 -1.5250 2.6394 9 6 5.3757 -1.5249 2.6394 10 6 5.8857 -2.2472 3.8881 11 1 5.4856 -1.7842 4.7901 12 6 7.4369 -2.2655 3.9212 13 6 7.7126 -3.5287 4.7786 14 7 6.6726 -4.4914 4.3724 15 6 6.7601 -5.8537 4.4807 16 1 5.9361 -6.4747 4.1620 17 6 7.9058 -6.4360 5.0054 18 7 8.9101 -5.6791 5.3937 19 14 8.0221 -8.2940 5.1601 20 1 8.6045 -8.8588 3.9164 21 1 8.8891 -8.6411 6.3147 22 1 6.6653 -8.8589 5.3724 23 6 5.5234 -3.7464 3.8379 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 3.9877 -0.4653 0.8049 34 1 3.4821 -2.5525 2.6391 35 1 3.4827 -1.0113 3.5295 36 1 5.7390 -0.4972 2.6399 37 1 5.7391 -2.0383 1.7493 38 1 7.8479 -2.3731 2.9175 39 1 7.8278 -1.3717 4.4075 40 1 7.6215 -3.2970 5.8398 41 1 8.7037 -3.9261 4.5599 42 1 9.7107 -6.0861 5.7600 43 1 5.3332 -4.0475 2.8077 44 1 4.6411 -3.9375 4.4487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494076085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:04 Heat of formation + Delta-G solvation = -38.984201 kcal Electronic energy + Delta-G solvation = -20783.667101 eV Core-core repulsion = 17735.680123 eV Total energy + Delta-G solvation = -3047.986978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22708 -37.85354 -35.86714 -35.19403 -32.97105 -30.77299 -28.97933 -27.67992 -27.46079 -26.53817 -24.83432 -23.13324 -21.93061 -20.09443 -19.81593 -18.95145 -16.91574 -16.84717 -16.00584 -15.75077 -15.11950 -14.62626 -14.32616 -14.14619 -14.10988 -13.60590 -13.28769 -12.67103 -12.54012 -12.50511 -12.25917 -12.15846 -12.01528 -11.86000 -11.67694 -11.56179 -11.25093 -11.22290 -11.02573 -10.89394 -10.72877 -10.13372 -10.06715 -9.93592 -9.75726 -9.65617 -9.40866 -9.04949 -8.61893 -6.78412 -5.61479 -3.03085 2.60625 3.12678 3.42170 3.47107 3.49357 4.37795 4.47323 4.52478 4.58167 4.90414 5.02504 5.12754 5.21697 5.28779 5.33158 5.38912 5.50923 5.51110 5.58130 5.61628 5.63244 5.66660 5.75116 5.83409 5.90406 5.93610 6.03397 6.04773 6.22448 6.25585 6.41505 6.45634 6.63401 6.66842 6.80526 7.01492 7.45578 7.56010 7.67361 7.89475 8.19171 8.40939 9.26491 9.87583 10.53037 11.42142 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.003319 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.339314 B = 8435.441428 C = 8864.961774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.518 3.482 6 O -0.540 6.540 7 N -0.727 5.727 8 C 0.116 3.884 9 C -0.115 4.115 10 C -0.098 4.098 11 H 0.071 0.929 12 C -0.138 4.138 13 C 0.150 3.850 14 N -0.606 5.606 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.140 3.860 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.010 0.990 41 H 0.106 0.894 42 H 0.251 0.749 43 H 0.022 0.978 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.414 15.308 -12.582 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.304 3.696 6 O -0.416 6.416 7 N -0.379 5.379 8 C -0.007 4.007 9 C -0.154 4.154 10 C -0.117 4.117 11 H 0.090 0.910 12 C -0.177 4.177 13 C 0.025 3.975 14 N -0.332 5.332 15 C -0.349 4.349 16 H 0.094 0.906 17 C -0.208 4.208 18 N -0.573 5.573 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.014 3.986 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.124 0.876 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.843 14.785 -11.901 21.858 hybrid contribution 0.380 -0.787 -0.097 0.879 sum -10.463 13.998 -11.997 21.198 Atomic orbital electron populations 1.21653 0.92017 1.02905 1.01904 1.20831 0.98080 0.96391 0.93822 1.21863 1.01213 0.93833 1.02832 1.21870 1.01278 1.00755 0.95934 1.20560 0.82289 0.79544 0.87220 1.90703 1.55367 1.48464 1.47088 1.46096 1.07005 1.58861 1.25914 1.21503 0.94529 0.97693 0.86956 1.21774 0.93168 1.00827 0.99585 1.22091 0.97201 0.96207 0.96230 0.91013 1.23075 0.93564 1.00063 1.00992 1.21986 0.96561 0.85336 0.93568 1.44532 1.13661 1.02018 1.72943 1.19105 1.00369 0.80655 1.34773 0.90552 1.24785 0.96599 0.98122 1.01337 1.69798 1.06352 1.32577 1.48528 0.86070 0.77391 0.84806 0.77253 1.21625 1.21669 1.20742 1.21358 0.91340 0.89492 0.96423 0.91960 0.92142 0.91892 0.92111 0.91404 0.92039 0.91921 0.91402 0.92065 0.76789 0.90984 0.91605 0.91716 0.91245 0.92199 0.92545 0.97172 0.87595 0.93807 0.96004 0.96309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 7.76 37.16 0.29 -0.84 16 2 C -0.09 -0.77 0.87 -155.66 -0.14 -0.90 16 3 C -0.14 -0.93 8.37 37.16 0.31 -0.62 16 4 C -0.14 -1.01 8.37 37.16 0.31 -0.70 16 5 C 0.52 6.46 6.48 -10.99 -0.07 6.39 16 6 O -0.54 -9.09 15.98 5.56 0.09 -9.00 16 7 N -0.73 -8.02 5.34 -60.30 -0.32 -8.34 16 8 C 0.12 1.54 5.52 -4.04 -0.02 1.52 16 9 C -0.12 -1.50 4.73 -26.73 -0.13 -1.62 16 10 C -0.10 -1.67 2.97 -88.78 -0.26 -1.93 16 11 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 12 C -0.14 -2.58 6.55 -24.45 -0.16 -2.74 16 13 C 0.15 3.71 5.91 -2.40 -0.01 3.69 16 14 N -0.61 -15.94 3.39 -169.93 -0.58 -16.52 16 15 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 18 N -0.92 -27.34 10.08 55.49 0.56 -26.78 16 19 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.14 2.98 5.98 -3.07 -0.02 2.96 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.06 0.35 7.57 -51.93 -0.39 -0.04 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.39 7.56 -51.93 -0.39 -0.01 16 33 H 0.40 3.27 7.31 -40.82 -0.30 2.97 16 34 H 0.07 1.11 7.49 -51.93 -0.39 0.72 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 38 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.11 2.93 5.85 -51.93 -0.30 2.62 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -32.92 346.50 -8.26 -41.18 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.05 Total: -1.44 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.15 Total: -1.75 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.34 Total: -51.65 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.92 -8.26 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494076085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.191 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds