Wall clock time and date at job start Mon Mar 30 2020 00:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47079 * 2 1 4 4 C 1.53000 * 109.47069 * 240.00311 * 2 1 3 5 5 C 1.50701 * 109.47169 * 119.99827 * 2 1 3 6 6 O 1.21273 * 119.99827 * 0.02562 * 5 2 1 7 7 N 1.34776 * 119.99929 * 179.97438 * 5 2 1 8 8 C 1.46498 * 119.99936 * 180.02562 * 7 5 2 9 9 C 1.52999 * 109.47176 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46947 * 180.02562 * 9 8 7 11 11 H 1.08996 * 110.64188 * 303.30672 * 10 9 8 12 12 C 1.55167 * 110.86767 * 180.02562 * 10 9 8 13 13 C 1.55140 * 101.48205 * 205.89724 * 12 10 9 14 14 N 1.47426 * 104.71884 * 37.29810 * 13 12 10 15 15 C 1.36939 * 125.64553 * 155.81775 * 14 13 12 16 16 H 1.07997 * 119.99728 * 179.41197 * 15 14 13 17 17 C 1.38815 * 119.99845 * 359.69111 * 15 14 13 18 18 N 1.31619 * 119.99884 * 359.72042 * 17 15 14 19 19 Si 1.86798 * 119.99660 * 179.72678 * 17 15 14 20 20 H 1.48493 * 109.47326 * 89.99909 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99659 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99370 * 19 17 15 23 23 C 1.47017 * 108.70306 * 335.54918 * 14 13 12 24 24 H 1.08997 * 109.47106 * 300.00219 * 1 2 3 25 25 H 1.08998 * 109.47058 * 60.00117 * 1 2 3 26 26 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47073 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47080 * 299.99869 * 3 2 1 29 29 H 1.08997 * 109.47330 * 59.99918 * 3 2 1 30 30 H 1.09001 * 109.46558 * 299.99221 * 4 2 1 31 31 H 1.08998 * 109.47530 * 59.99860 * 4 2 1 32 32 H 1.09000 * 109.47184 * 179.97438 * 4 2 1 33 33 H 0.97003 * 119.99852 * 0.02562 * 7 5 2 34 34 H 1.09000 * 109.46959 * 60.00164 * 8 7 5 35 35 H 1.08997 * 109.46994 * 299.99977 * 8 7 5 36 36 H 1.09000 * 109.47077 * 60.00194 * 9 8 7 37 37 H 1.08997 * 109.47106 * 299.99867 * 9 8 7 38 38 H 1.08997 * 111.00435 * 324.13709 * 12 10 9 39 39 H 1.08997 * 111.00229 * 87.95375 * 12 10 9 40 40 H 1.08994 * 110.49646 * 278.45386 * 13 12 10 41 41 H 1.09000 * 110.33762 * 156.05529 * 13 12 10 42 42 H 0.97000 * 119.99517 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.87978 * 120.71058 * 23 14 13 44 44 H 1.09004 * 109.88095 * 241.71521 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2443 -1.1716 2.0285 7 7 3.3574 -0.8339 1.4435 8 6 3.8458 -1.5250 2.6394 9 6 5.3757 -1.5249 2.6394 10 6 5.8857 -2.2472 3.8881 11 1 5.4856 -1.7842 4.7901 12 6 7.4369 -2.2655 3.9212 13 6 7.7126 -3.5287 4.7786 14 7 6.6726 -4.4914 4.3724 15 6 6.7601 -5.8537 4.4807 16 1 5.9361 -6.4747 4.1620 17 6 7.9058 -6.4360 5.0054 18 7 8.9101 -5.6791 5.3937 19 14 8.0221 -8.2940 5.1601 20 1 8.6045 -8.8588 3.9164 21 1 8.8891 -8.6411 6.3147 22 1 6.6653 -8.8589 5.3724 23 6 5.5234 -3.7464 3.8379 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7208 -1.2495 33 1 3.9877 -0.4653 0.8049 34 1 3.4821 -2.5525 2.6391 35 1 3.4827 -1.0113 3.5295 36 1 5.7390 -0.4972 2.6399 37 1 5.7391 -2.0383 1.7493 38 1 7.8479 -2.3731 2.9175 39 1 7.8278 -1.3717 4.4075 40 1 7.6215 -3.2970 5.8398 41 1 8.7037 -3.9261 4.5599 42 1 9.7107 -6.0861 5.7600 43 1 5.3332 -4.0475 2.8077 44 1 4.6411 -3.9375 4.4487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494076085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:03 Heat of formation + Delta-G solvation = -60.351582 kcal Electronic energy + Delta-G solvation = -20784.593660 eV Core-core repulsion = 17735.680123 eV Total energy + Delta-G solvation = -3048.913537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17636 -39.45622 -36.72040 -36.41422 -34.72833 -32.43550 -30.70319 -28.40604 -28.18998 -27.85251 -26.62287 -24.35282 -23.06742 -21.90884 -21.08970 -20.06624 -18.90626 -17.70734 -17.14683 -17.00018 -16.63841 -16.25065 -15.60484 -15.22382 -15.15741 -14.70581 -14.31414 -14.28242 -13.78778 -13.53007 -13.37024 -13.26937 -13.13568 -13.02071 -12.87492 -12.81138 -12.71010 -12.60944 -12.23134 -12.01994 -11.88744 -11.84472 -11.77838 -11.54946 -11.44490 -11.24584 -10.76491 -10.64393 -10.08291 -8.88913 -7.78439 -5.23336 1.44522 1.46708 1.55548 1.65186 2.21004 2.48457 3.29973 3.62880 3.73496 3.75050 3.86406 3.92935 3.96169 4.16462 4.25497 4.34405 4.37916 4.62605 4.70439 4.72356 4.73634 4.75039 4.84524 4.87483 4.96272 4.96821 5.01866 5.03701 5.11247 5.17758 5.24491 5.25900 5.35644 5.36730 5.42418 5.47592 5.50782 5.68417 5.82826 6.31902 6.58001 7.10725 7.27792 7.78532 8.42307 9.22819 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033272 B = 0.003319 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.339314 B = 8435.441428 C = 8864.961774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.511 3.489 6 O -0.592 6.592 7 N -0.714 5.714 8 C 0.122 3.878 9 C -0.098 4.098 10 C -0.085 4.085 11 H 0.077 0.923 12 C -0.120 4.120 13 C 0.148 3.852 14 N -0.629 5.629 15 C -0.243 4.243 16 H 0.075 0.925 17 C -0.067 4.067 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.134 3.866 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.415 0.585 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.086 0.914 40 H -0.017 1.017 41 H 0.073 0.927 42 H 0.248 0.752 43 H 0.025 0.975 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 17.067 -14.679 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.196 4.196 5 C 0.298 3.702 6 O -0.472 6.472 7 N -0.366 5.366 8 C -0.002 4.002 9 C -0.136 4.136 10 C -0.104 4.104 11 H 0.095 0.905 12 C -0.159 4.159 13 C 0.023 3.977 14 N -0.355 5.355 15 C -0.372 4.372 16 H 0.093 0.907 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.809 3.191 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.199 1.199 23 C 0.009 3.991 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.253 0.747 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.001 0.999 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -10.800 16.577 -14.038 24.259 hybrid contribution 0.330 -1.347 0.578 1.503 sum -10.470 15.230 -13.459 22.863 Atomic orbital electron populations 1.21675 0.92498 1.01850 1.02518 1.20874 0.97723 0.97556 0.92444 1.21881 1.02133 0.91957 1.03457 1.21895 1.02085 0.99872 0.95798 1.21371 0.82147 0.78839 0.87805 1.90680 1.56678 1.50743 1.49145 1.45936 1.07098 1.58065 1.25470 1.21268 0.94817 0.96371 0.87742 1.21615 0.92435 1.02191 0.97372 1.22014 0.96111 0.93493 0.98811 0.90465 1.22910 0.94690 0.97918 1.00361 1.21837 0.94827 0.87813 0.93245 1.44878 1.15620 1.01924 1.73120 1.19458 1.00539 0.82334 1.34902 0.90668 1.25642 0.96340 1.02639 1.01347 1.70056 1.06577 1.34103 1.49045 0.85042 0.77497 0.79472 0.77105 1.20863 1.21781 1.19866 1.21553 0.89537 0.92188 0.95792 0.93456 0.89347 0.93828 0.90662 0.89203 0.93042 0.93511 0.89087 0.90795 0.74716 0.93729 0.92334 0.88227 0.90664 0.91259 0.89508 0.99949 0.90898 0.94269 0.95705 0.97420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.76 71.98 0.56 -1.59 16 2 C -0.08 -1.28 0.87 -52.93 -0.05 -1.33 16 3 C -0.14 -1.38 8.37 71.98 0.60 -0.78 16 4 C -0.14 -1.60 8.37 71.98 0.60 -1.00 16 5 C 0.51 12.28 6.48 87.66 0.57 12.85 16 6 O -0.59 -20.38 15.98 -3.01 -0.05 -20.43 16 7 N -0.71 -14.27 5.34 -463.08 -2.47 -16.74 16 8 C 0.12 3.06 5.52 86.38 0.48 3.53 16 9 C -0.10 -2.24 4.73 30.59 0.14 -2.09 16 10 C -0.08 -2.74 2.97 -9.60 -0.03 -2.77 16 11 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 12 C -0.12 -4.26 6.55 32.07 0.21 -4.05 16 13 C 0.15 7.42 5.91 86.94 0.51 7.94 16 14 N -0.63 -33.81 3.39 -691.55 -2.35 -36.16 16 15 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 16 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 17 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 18 N -0.95 -57.63 10.08 21.65 0.22 -57.41 16 19 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 23 C 0.13 5.75 5.98 86.73 0.52 6.27 16 24 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 25 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.88 8.10 -2.39 -0.02 0.87 16 27 H 0.07 0.55 7.57 -2.39 -0.02 0.53 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.66 7.56 -2.39 -0.02 0.65 16 33 H 0.42 5.35 7.31 -92.71 -0.68 4.67 16 34 H 0.04 1.37 7.49 -2.39 -0.02 1.35 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 38 H 0.07 2.34 8.05 -2.39 -0.02 2.33 16 39 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.07 4.16 5.85 -2.39 -0.01 4.14 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.02 1.05 7.76 -2.39 -0.02 1.03 16 44 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 Total: -1.00 -75.11 346.50 3.10 -72.01 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.27 Total: 9.74 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.45 Total: 0.13 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -4.60 Total: -110.31 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.11 3.10 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494076085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.657 kcal (2) G-P(sol) polarization free energy of solvation -75.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds