Wall clock time and date at job start Mon Mar 30 2020 00:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 C 1.52998 * 109.46835 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47690 * 304.99938 * 4 3 2 6 6 C 1.52999 * 109.46853 * 65.00579 * 4 3 2 7 7 C 1.53005 * 109.46814 * 184.99966 * 4 3 2 8 8 C 1.50697 * 109.47149 * 175.00554 * 7 4 3 9 9 O 1.21287 * 119.99830 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00068 * 180.02562 * 8 7 4 11 11 C 1.46498 * 120.00179 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.64030 * 36.68303 * 11 10 8 13 13 C 1.55154 * 110.87454 * 159.93416 * 11 10 8 14 14 C 1.55137 * 101.48430 * 82.76713 * 13 11 10 15 15 N 1.47425 * 104.72129 * 37.29764 * 14 13 11 16 16 C 1.36932 * 125.64896 * 155.81436 * 15 14 13 17 17 H 1.07999 * 120.00109 * 194.55989 * 16 15 14 18 18 C 1.38813 * 119.99842 * 14.56765 * 16 15 14 19 19 N 1.31623 * 119.99583 * 203.65448 * 18 16 15 20 20 Si 1.86792 * 120.00042 * 23.65532 * 18 16 15 21 21 H 1.48500 * 109.47223 * 269.99897 * 20 18 16 22 22 H 1.48504 * 109.47280 * 30.00135 * 20 18 16 23 23 H 1.48507 * 109.47300 * 150.00206 * 20 18 16 24 24 C 1.47026 * 108.70205 * 335.55060 * 15 14 13 25 25 H 1.08993 * 109.47045 * 59.99893 * 1 2 3 26 26 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46758 * 299.99844 * 1 2 3 28 28 H 1.08999 * 109.46758 * 240.00156 * 2 1 3 29 29 H 1.09007 * 109.47048 * 120.00180 * 2 1 3 30 30 H 1.08998 * 109.46787 * 59.99688 * 3 2 1 31 31 H 1.09001 * 109.46884 * 299.99892 * 3 2 1 32 32 H 1.08999 * 109.47207 * 299.99344 * 6 4 3 33 33 H 1.08993 * 109.47840 * 59.99662 * 6 4 3 34 34 H 1.09001 * 109.47021 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.47167 * 55.00235 * 7 4 3 36 36 H 1.09006 * 109.47126 * 295.00209 * 7 4 3 37 37 H 0.97000 * 120.00077 * 0.02562 * 10 8 7 38 38 H 1.08994 * 111.00768 * 201.00525 * 13 11 10 39 39 H 1.08999 * 111.00376 * 324.86308 * 13 11 10 40 40 H 1.08999 * 110.49481 * 278.45643 * 14 13 11 41 41 H 1.08997 * 110.34065 * 156.05714 * 14 13 11 42 42 H 0.96995 * 120.00397 * 354.69623 * 19 18 16 43 43 H 1.09007 * 109.88116 * 120.70754 * 24 15 14 44 44 H 1.08995 * 109.88334 * 241.71659 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0801 2.8795 0.1264 8 6 5.5819 2.8705 0.2504 9 8 6.1849 1.8182 0.2398 10 7 6.2548 4.0317 0.3741 11 6 7.7147 4.0229 0.4953 12 1 8.1472 3.2393 -0.1269 13 6 8.3085 5.4079 0.1255 14 6 8.1336 6.1844 1.4571 15 7 8.4032 5.1882 2.5099 16 6 8.8239 5.4664 3.7829 17 1 9.2178 4.6771 4.4061 18 6 8.7440 6.7628 4.2726 19 7 9.5320 7.1448 5.2552 20 14 7.5183 7.9651 3.5369 21 1 8.1551 8.6946 2.4111 22 1 6.3338 7.2213 3.0379 23 1 7.0914 8.9354 4.5770 24 6 8.1393 3.8470 1.9685 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7172 -0.1911 -1.3961 33 1 3.7176 1.4220 -2.1485 34 1 5.1705 0.8330 -1.3062 35 1 3.6451 3.3432 1.0117 36 1 3.7920 3.4460 -0.7592 37 1 5.7724 4.8732 0.3837 38 1 9.3607 5.3222 -0.1454 39 1 7.7372 5.8765 -0.6759 40 1 7.1160 6.5647 1.5463 41 1 8.8518 7.0022 1.5159 42 1 10.1136 6.5010 5.6888 43 1 9.0434 3.2404 2.0238 44 1 7.3382 3.3703 2.5332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494696371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:56 Heat of formation + Delta-G solvation = -40.364140 kcal Electronic energy + Delta-G solvation = -21004.486590 eV Core-core repulsion = 17956.439774 eV Total energy + Delta-G solvation = -3048.046817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93623 -37.88871 -36.61954 -33.92106 -32.84811 -32.05435 -29.60383 -28.48834 -27.28086 -26.73326 -23.90383 -22.44832 -20.99326 -20.68383 -19.86395 -19.73609 -17.48438 -16.94314 -16.01797 -15.70258 -15.37130 -14.99638 -14.41825 -14.32178 -13.87298 -13.64937 -13.43878 -13.30845 -13.11622 -12.45951 -12.27876 -12.06051 -11.89109 -11.84728 -11.65332 -11.22085 -11.14927 -11.11034 -10.99444 -10.88288 -10.79202 -10.71197 -10.58466 -10.07311 -9.64163 -9.48705 -9.23911 -8.78715 -8.51190 -7.06722 -6.30877 -3.20799 2.82493 3.36158 3.37946 3.47787 3.63977 4.55484 4.58038 4.65866 4.71105 4.93156 4.96031 5.03253 5.05706 5.15902 5.31749 5.36838 5.39497 5.46701 5.51107 5.52489 5.58826 5.62264 5.69192 5.75604 5.83302 5.89353 5.97300 6.00275 6.03758 6.10316 6.17392 6.29530 6.33554 6.44417 6.51061 6.61389 6.70321 6.93795 7.69104 7.77206 8.35286 8.43726 9.05124 9.59276 10.27128 11.16510 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.003911 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.429445 B = 7157.801488 C = 7543.879456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.078 0.922 6 C -0.153 4.153 7 C -0.139 4.139 8 C 0.513 3.487 9 O -0.541 6.541 10 N -0.717 5.717 11 C 0.131 3.869 12 H 0.092 0.908 13 C -0.138 4.138 14 C 0.104 3.896 15 N -0.607 5.607 16 C -0.325 4.325 17 H 0.074 0.926 18 C -0.023 4.023 19 N -0.923 5.923 20 Si 1.069 2.931 21 H -0.294 1.294 22 H -0.289 1.289 23 H -0.299 1.299 24 C 0.127 3.873 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.399 0.601 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.262 0.738 43 H 0.035 0.965 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.242 -8.794 -14.946 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.097 0.903 6 C -0.210 4.210 7 C -0.179 4.179 8 C 0.300 3.700 9 O -0.419 6.419 10 N -0.368 5.368 11 C 0.026 3.974 12 H 0.110 0.890 13 C -0.176 4.176 14 C -0.022 4.022 15 N -0.335 5.335 16 C -0.452 4.452 17 H 0.092 0.908 18 C -0.223 4.223 19 N -0.565 5.565 20 Si 0.901 3.099 21 H -0.222 1.222 22 H -0.216 1.216 23 H -0.227 1.227 24 C 0.000 4.000 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.233 0.767 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.270 -7.987 -14.784 22.706 hybrid contribution 0.239 -1.105 0.105 1.135 sum -15.032 -9.092 -14.679 22.893 Atomic orbital electron populations 1.21783 0.96120 1.01419 1.01681 1.21575 0.95485 0.97040 1.02271 1.21686 0.94808 0.96910 1.01926 1.20890 0.94304 0.94356 0.99875 0.90349 1.21986 1.03170 1.00014 0.95821 1.21773 0.92391 0.99612 1.04080 1.20636 0.89984 0.83685 0.75727 1.90651 1.70398 1.30759 1.50076 1.46055 1.07815 1.08837 1.74067 1.21948 0.79405 0.98330 0.97680 0.88998 1.23082 1.01476 0.94960 0.98133 1.22076 0.98686 0.93886 0.87510 1.44820 1.79590 0.99826 1.09296 1.20052 1.38837 0.97189 0.89156 0.90840 1.25927 1.00849 0.96688 0.98810 1.70894 1.23157 1.35026 1.27378 0.83777 0.76458 0.75213 0.74438 1.22173 1.21579 1.22720 1.21723 0.97819 0.89163 0.91288 0.92894 0.92952 0.92811 0.91746 0.92003 0.91971 0.92028 0.92898 0.93604 0.90659 0.88961 0.89166 0.76742 0.89739 0.90994 0.95416 0.92041 0.92717 0.94675 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.02 5.69 -26.73 -0.15 -1.17 16 3 C -0.12 -0.97 4.68 -26.73 -0.13 -1.10 16 4 C -0.08 -0.79 2.04 -90.62 -0.18 -0.97 16 5 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 6 C -0.15 -1.62 8.69 37.16 0.32 -1.30 16 7 C -0.14 -1.46 5.17 -27.88 -0.14 -1.60 16 8 C 0.51 7.40 7.54 -10.99 -0.08 7.32 16 9 O -0.54 -9.55 13.69 5.55 0.08 -9.47 16 10 N -0.72 -10.41 5.12 -52.03 -0.27 -10.68 16 11 C 0.13 2.20 3.24 -66.10 -0.21 1.98 16 12 H 0.09 1.51 7.69 -51.93 -0.40 1.11 16 13 C -0.14 -2.19 6.66 -24.46 -0.16 -2.35 16 14 C 0.10 2.16 4.69 -2.41 -0.01 2.15 16 15 N -0.61 -14.98 3.25 -169.93 -0.55 -15.53 16 16 C -0.32 -9.44 10.44 -15.06 -0.16 -9.60 16 17 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 18 C -0.02 -0.67 5.43 -17.43 -0.09 -0.76 16 19 N -0.92 -29.13 13.70 55.49 0.76 -28.37 16 20 Si 1.07 26.39 24.69 -169.99 -4.20 22.19 16 21 H -0.29 -6.80 6.66 56.52 0.38 -6.42 16 22 H -0.29 -6.65 6.22 56.52 0.35 -6.30 16 23 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 24 C 0.13 2.70 6.98 -3.06 -0.02 2.68 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.99 5.95 -51.93 -0.31 0.68 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 5.03 8.63 -40.82 -0.35 4.68 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.58 5.50 -51.93 -0.29 0.29 16 41 H 0.06 1.37 6.38 -51.93 -0.33 1.04 16 42 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -33.07 339.38 -7.64 -40.71 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.91 Total: 1.45 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.66 Total: -5.42 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.06 Total: -54.57 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -4.20 Total: 22.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.07 -7.64 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494696371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.345 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds